Wall clock time and date at job start Fri Apr 10 2020 14:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 120.00061 * 2 1 4 4 H 1.48499 * 109.46881 * 269.99949 * 3 2 1 5 5 H 1.48503 * 109.46952 * 29.99956 * 3 2 1 6 6 H 1.48500 * 109.47333 * 149.99866 * 3 2 1 7 7 C 1.39941 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00179 * 197.86827 * 7 2 1 9 9 C 1.41399 * 120.00165 * 17.86390 * 7 2 1 10 10 C 1.40713 * 120.24886 * 204.39174 * 9 7 2 11 11 C 1.37613 * 119.74881 * 179.97438 * 10 9 7 12 12 C 1.38638 * 120.24665 * 359.97438 * 11 10 9 13 13 S 1.76203 * 119.74930 * 180.02562 * 12 11 10 14 14 O 1.42096 * 106.39944 * 336.45455 * 13 12 11 15 15 O 1.42101 * 106.40029 * 203.53641 * 13 12 11 16 16 N 1.65594 * 107.21971 * 89.99608 * 13 12 11 17 17 C 1.46507 * 120.00037 * 64.72717 * 16 13 12 18 18 C 1.52999 * 109.47368 * 165.27454 * 17 16 13 19 19 H 1.08999 * 115.54695 * 330.58050 * 18 17 16 20 20 C 1.53002 * 117.50019 * 116.25043 * 18 17 16 21 21 C 1.53000 * 117.49823 * 184.91085 * 18 17 16 22 22 H 1.08995 * 117.49555 * 145.01738 * 21 18 17 23 23 C 1.50693 * 117.49984 * 0.02562 * 21 18 17 24 24 O 1.20828 * 120.00220 * 359.97438 * 23 21 18 25 25 O 1.34232 * 120.00126 * 179.97438 * 23 21 18 26 26 C 1.38634 * 120.49912 * 0.26985 * 12 11 10 27 27 C 1.37620 * 120.25164 * 359.45559 * 26 12 11 28 28 H 0.97000 * 119.99860 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.12406 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.88078 * 180.02562 * 11 10 9 31 31 H 0.96994 * 120.00599 * 244.99831 * 16 13 12 32 32 H 1.09007 * 109.46843 * 285.27363 * 17 16 13 33 33 H 1.09000 * 109.47173 * 45.27128 * 17 16 13 34 34 H 1.08998 * 117.49910 * 214.98071 * 20 18 17 35 35 H 1.09002 * 117.49672 * 0.02562 * 20 18 17 36 36 H 0.96697 * 117.00003 * 179.97438 * 25 23 21 37 37 H 1.08003 * 119.87498 * 179.70489 * 26 12 11 38 38 H 1.07999 * 120.13133 * 180.26546 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2875 9 6 1.3521 -2.4072 -0.3746 10 6 1.8256 -3.6499 0.0853 11 6 1.1791 -4.8067 -0.2857 12 6 0.0649 -4.7507 -1.1089 13 16 -0.7532 -6.2400 -1.5753 14 8 0.2071 -7.2803 -1.4536 15 8 -1.4433 -5.9568 -2.7848 16 7 -1.9144 -6.5397 -0.4334 17 6 -3.0402 -5.6157 -0.2735 18 6 -4.1353 -6.2854 0.5590 19 1 -4.1908 -7.3709 0.4767 20 6 -4.4736 -5.6614 1.9144 21 6 -5.4489 -5.5228 0.7427 22 1 -6.3685 -6.1066 0.7817 23 6 -5.5653 -4.1698 0.0894 24 8 -4.6410 -3.7261 -0.5499 25 8 -6.6957 -3.4575 0.2177 26 6 -0.4073 -3.5324 -1.5720 27 6 0.2200 -2.3624 -1.2092 28 1 -0.4850 0.8401 -0.0004 29 1 2.6926 -3.6956 0.7276 30 1 1.5404 -5.7616 0.0663 31 1 -1.8474 -7.3247 0.1322 32 1 -2.6998 -4.7126 0.2331 33 1 -3.4378 -5.3543 -1.2541 34 1 -4.7520 -6.3364 2.7237 35 1 -3.9163 -4.7735 2.2128 36 1 -6.7232 -2.5952 -0.2188 37 1 -1.2733 -3.5009 -2.2166 38 1 -0.1521 -1.4140 -1.5676 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715228300.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:57 Heat of formation + Delta-G solvation = -128.227352 kcal Electronic energy + Delta-G solvation = -25248.216325 eV Core-core repulsion = 21375.910828 eV Total energy + Delta-G solvation = -3872.305496 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.61443 -37.77810 -37.51017 -36.40403 -35.92419 -35.05997 -34.03303 -33.93845 -30.20256 -29.40432 -26.62325 -25.76752 -25.15825 -21.67144 -21.42438 -21.06883 -20.46985 -18.71053 -18.28336 -17.56477 -17.16941 -16.92538 -16.33056 -15.76293 -15.49908 -15.32685 -14.78208 -14.24637 -14.03925 -13.63699 -13.58118 -13.26914 -13.15530 -12.64762 -12.36925 -12.12902 -11.92701 -11.73563 -11.66300 -11.42460 -11.31540 -11.30309 -11.21989 -11.17177 -10.87323 -10.70029 -10.64141 -10.35926 -10.28249 -9.69836 -9.54508 -9.46582 -8.91518 -7.90907 -7.63818 -7.09881 -4.75714 1.33079 2.02785 2.30724 2.82868 2.89934 2.94306 2.94803 2.98926 3.45523 3.69151 3.81179 4.26317 4.42463 4.50894 4.58491 4.68025 5.09167 5.14168 5.27313 5.43613 5.49543 5.54301 5.75958 5.91401 6.06478 6.12460 6.21144 6.38465 6.48081 6.73058 6.76451 6.97430 7.10497 7.37541 7.41351 7.48381 7.70569 7.82294 7.84827 8.01913 8.37392 8.56187 8.70589 9.81358 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.010750 B = 0.004498 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.995840 B = 6223.052427 C = 8091.943594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.437 4.437 8 H 0.087 0.913 9 C 0.140 3.860 10 C -0.240 4.240 11 C 0.002 3.998 12 C -0.786 4.786 13 S 2.695 3.305 14 O -0.988 6.988 15 O -0.983 6.983 16 N -1.128 6.128 17 C 0.153 3.847 18 C -0.120 4.120 19 H 0.127 0.873 20 C -0.144 4.144 21 C -0.164 4.164 22 H 0.137 0.863 23 C 0.500 3.500 24 O -0.493 6.493 25 O -0.518 6.518 26 C -0.012 4.012 27 C -0.183 4.183 28 H 0.288 0.712 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.408 0.592 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.413 0.587 37 H 0.104 0.896 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.361 -5.646 4.648 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.465 4.465 8 H 0.105 0.895 9 C 0.136 3.864 10 C -0.261 4.261 11 C -0.018 4.018 12 C -0.882 4.882 13 S 2.794 3.206 14 O -0.979 6.979 15 O -0.974 6.974 16 N -0.885 5.885 17 C 0.028 3.972 18 C -0.140 4.140 19 H 0.144 0.856 20 C -0.181 4.181 21 C -0.184 4.184 22 H 0.155 0.845 23 C 0.341 3.659 24 O -0.379 6.379 25 O -0.330 6.330 26 C -0.033 4.033 27 C -0.203 4.203 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.240 0.760 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.272 0.728 37 H 0.122 0.878 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.197 -6.136 3.806 13.323 hybrid contribution 0.264 1.689 0.544 1.794 sum -10.933 -4.447 4.350 12.579 Atomic orbital electron populations 1.69832 1.07878 1.30241 1.30840 1.26125 0.94878 1.02064 0.91887 0.86157 0.80492 0.79571 0.79775 1.18803 1.19928 1.18221 1.19936 0.98478 0.91195 1.36874 0.89486 1.17857 0.90050 0.92122 0.86358 1.21035 1.04456 0.92736 1.07829 1.20159 0.92188 0.97240 0.92262 1.29163 1.16386 1.15959 1.26699 1.01136 0.72271 0.74237 0.72953 1.93484 1.60642 1.56937 1.86820 1.93484 1.74342 1.86231 1.43313 1.55801 1.39385 1.35804 1.57479 1.20985 0.84253 0.90861 1.01146 1.22712 0.93198 0.99513 0.98536 0.85561 1.23282 0.99516 1.03946 0.91331 1.21769 0.97549 0.93206 1.05848 0.84473 1.22359 0.79474 0.86132 0.77917 1.90847 1.38842 1.70239 1.37980 1.84459 1.40585 1.35457 1.72518 1.20289 0.96556 0.91651 0.94777 1.21330 1.00013 0.96873 1.02093 0.90076 0.88259 0.87817 0.76003 0.90455 0.88953 0.86907 0.87313 0.72837 0.87797 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.54 10.95 55.55 0.61 -17.94 16 2 C 0.07 1.70 5.14 -17.34 -0.09 1.61 16 3 Si 0.92 17.32 29.60 -169.99 -5.03 12.29 16 4 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 5 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 7 C -0.44 -10.94 9.05 -37.74 -0.34 -11.28 16 8 H 0.09 2.06 7.91 -52.49 -0.41 1.65 16 9 C 0.14 3.63 5.58 -106.82 -0.60 3.03 16 10 C -0.24 -5.80 9.80 -38.88 -0.38 -6.18 16 11 C 0.00 0.04 9.49 -39.66 -0.38 -0.34 16 12 C -0.79 -17.93 5.97 -39.29 -0.23 -18.16 16 13 S 2.70 53.73 5.73 -107.50 -0.62 53.12 16 14 O -0.99 -21.18 17.26 -57.17 -0.99 -22.17 16 15 O -0.98 -22.00 16.74 -57.17 -0.96 -22.96 16 16 N -1.13 -17.35 6.00 -10.61 -0.06 -17.42 16 17 C 0.15 2.33 4.76 -4.04 -0.02 2.31 16 18 C -0.12 -1.27 5.83 -90.62 -0.53 -1.79 16 19 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 20 C -0.14 -1.29 9.89 -26.69 -0.26 -1.56 16 21 C -0.16 -1.57 6.30 -91.74 -0.58 -2.14 16 22 H 0.14 0.95 8.14 -51.93 -0.42 0.52 16 23 C 0.50 6.06 8.09 36.00 0.29 6.35 16 24 O -0.49 -7.96 13.87 -18.75 -0.26 -8.22 16 25 O -0.52 -4.93 13.42 -39.26 -0.53 -5.46 16 26 C -0.01 -0.30 9.49 -39.66 -0.38 -0.68 16 27 C -0.18 -4.73 8.70 -38.87 -0.34 -5.07 16 28 H 0.29 6.26 8.30 -40.82 -0.34 5.93 16 29 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 30 H 0.10 2.13 7.60 -52.49 -0.40 1.73 16 31 H 0.41 4.97 8.65 -34.47 -0.30 4.68 16 32 H 0.08 1.32 7.30 -51.93 -0.38 0.94 16 33 H 0.09 1.58 6.55 -51.93 -0.34 1.24 16 34 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.11 1.14 8.03 -51.93 -0.42 0.72 16 36 H 0.41 2.46 9.10 45.56 0.41 2.88 16 37 H 0.10 2.41 7.59 -52.48 -0.40 2.01 16 38 H 0.12 3.19 6.15 -52.49 -0.32 2.87 16 LS Contribution 342.63 15.07 5.16 5.16 Total: -1.00 -33.40 342.63 -9.88 -43.28 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -3.38 Total: 14.22 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: -3.83 Total: -33.91 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.54 Total: -35.35 kcal Atomic # 8 Polarization: -56.08 SS G_CDS: -2.73 Total: -58.81 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Atomic # 16 Polarization: 53.73 SS G_CDS: -0.62 Total: 53.12 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.40 -9.88 -43.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715228300.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.945 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds