Wall clock time and date at job start Fri Apr 10 2020 14:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 120.00061 * 2 1 4 4 H 1.48499 * 109.46881 * 269.99949 * 3 2 1 5 5 H 1.48503 * 109.46952 * 29.99956 * 3 2 1 6 6 H 1.48500 * 109.47333 * 149.99866 * 3 2 1 7 7 C 1.39941 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00179 * 197.86827 * 7 2 1 9 9 C 1.41399 * 120.00165 * 17.86390 * 7 2 1 10 10 C 1.40713 * 120.24886 * 204.39174 * 9 7 2 11 11 C 1.37613 * 119.74881 * 179.97438 * 10 9 7 12 12 C 1.38638 * 120.24665 * 359.97438 * 11 10 9 13 13 S 1.76203 * 119.74930 * 180.02562 * 12 11 10 14 14 O 1.42096 * 106.39944 * 336.45455 * 13 12 11 15 15 O 1.42101 * 106.40029 * 203.53641 * 13 12 11 16 16 N 1.65594 * 107.21971 * 89.99608 * 13 12 11 17 17 C 1.46507 * 120.00037 * 64.72717 * 16 13 12 18 18 C 1.52999 * 109.47368 * 165.27454 * 17 16 13 19 19 H 1.08999 * 115.54695 * 330.58050 * 18 17 16 20 20 C 1.53002 * 117.50019 * 116.25043 * 18 17 16 21 21 C 1.53000 * 117.49823 * 184.91085 * 18 17 16 22 22 H 1.08995 * 117.49555 * 145.01738 * 21 18 17 23 23 C 1.50693 * 117.49984 * 0.02562 * 21 18 17 24 24 O 1.20828 * 120.00220 * 359.97438 * 23 21 18 25 25 O 1.34232 * 120.00126 * 179.97438 * 23 21 18 26 26 C 1.38634 * 120.49912 * 0.26985 * 12 11 10 27 27 C 1.37620 * 120.25164 * 359.45559 * 26 12 11 28 28 H 0.97000 * 119.99860 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.12406 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.88078 * 180.02562 * 11 10 9 31 31 H 0.96994 * 120.00599 * 244.99831 * 16 13 12 32 32 H 1.09007 * 109.46843 * 285.27363 * 17 16 13 33 33 H 1.09000 * 109.47173 * 45.27128 * 17 16 13 34 34 H 1.08998 * 117.49910 * 214.98071 * 20 18 17 35 35 H 1.09002 * 117.49672 * 0.02562 * 20 18 17 36 36 H 0.96697 * 117.00003 * 179.97438 * 25 23 21 37 37 H 1.08003 * 119.87498 * 179.70489 * 26 12 11 38 38 H 1.07999 * 120.13133 * 180.26546 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2875 9 6 1.3521 -2.4072 -0.3746 10 6 1.8256 -3.6499 0.0853 11 6 1.1791 -4.8067 -0.2857 12 6 0.0649 -4.7507 -1.1089 13 16 -0.7532 -6.2400 -1.5753 14 8 0.2071 -7.2803 -1.4536 15 8 -1.4433 -5.9568 -2.7848 16 7 -1.9144 -6.5397 -0.4334 17 6 -3.0402 -5.6157 -0.2735 18 6 -4.1353 -6.2854 0.5590 19 1 -4.1908 -7.3709 0.4767 20 6 -4.4736 -5.6614 1.9144 21 6 -5.4489 -5.5228 0.7427 22 1 -6.3685 -6.1066 0.7817 23 6 -5.5653 -4.1698 0.0894 24 8 -4.6410 -3.7261 -0.5499 25 8 -6.6957 -3.4575 0.2177 26 6 -0.4073 -3.5324 -1.5720 27 6 0.2200 -2.3624 -1.2092 28 1 -0.4850 0.8401 -0.0004 29 1 2.6926 -3.6956 0.7276 30 1 1.5404 -5.7616 0.0663 31 1 -1.8474 -7.3247 0.1322 32 1 -2.6998 -4.7126 0.2331 33 1 -3.4378 -5.3543 -1.2541 34 1 -4.7520 -6.3364 2.7237 35 1 -3.9163 -4.7735 2.2128 36 1 -6.7232 -2.5952 -0.2188 37 1 -1.2733 -3.5009 -2.2166 38 1 -0.1521 -1.4140 -1.5676 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715228300.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:57 Heat of formation + Delta-G solvation = -152.987838 kcal Electronic energy + Delta-G solvation = -25249.290020 eV Core-core repulsion = 21375.910828 eV Total energy + Delta-G solvation = -3873.379192 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.54653 -39.39604 -38.66354 -38.10777 -36.89516 -36.79580 -35.82297 -35.20817 -32.08186 -31.30569 -27.73377 -27.63004 -26.07067 -23.33170 -22.97307 -22.43719 -21.42297 -20.25585 -19.43344 -19.19904 -18.61209 -18.33399 -17.79763 -17.22486 -16.72253 -16.62341 -15.90045 -15.86349 -15.45795 -15.19790 -14.94160 -14.71797 -14.56068 -14.11232 -13.98698 -13.64870 -13.58984 -13.13726 -13.10842 -13.02439 -12.91795 -12.89425 -12.60851 -12.58321 -12.35005 -11.99369 -11.65751 -11.54938 -11.51968 -11.38190 -11.25384 -11.15733 -10.29948 -9.80699 -9.56381 -8.88234 -6.66539 -0.29791 0.47134 1.04494 1.10688 1.33946 1.42475 1.49559 2.04601 2.10017 2.24261 2.50123 2.73901 2.93124 3.46048 3.53104 3.69406 3.76418 3.86395 4.23730 4.28894 4.32013 4.39481 4.55318 4.71953 4.83654 4.86333 4.89076 4.94045 5.02918 5.09755 5.22742 5.28387 5.50935 5.58122 5.65172 5.75454 5.91633 6.13311 6.27030 6.47675 6.66572 6.79677 7.00696 8.06700 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.010750 B = 0.004498 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.995840 B = 6223.052427 C = 8091.943594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.033 3.967 3 Si 0.993 3.007 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.251 1.251 7 C -0.466 4.466 8 H 0.094 0.906 9 C 0.111 3.889 10 C -0.256 4.256 11 C -0.001 4.001 12 C -0.798 4.798 13 S 2.727 3.273 14 O -0.998 6.998 15 O -1.007 7.007 16 N -1.107 6.107 17 C 0.152 3.848 18 C -0.130 4.130 19 H 0.161 0.839 20 C -0.130 4.130 21 C -0.159 4.159 22 H 0.175 0.825 23 C 0.495 3.505 24 O -0.545 6.545 25 O -0.510 6.510 26 C -0.019 4.019 27 C -0.208 4.208 28 H 0.297 0.703 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.427 0.573 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.152 0.848 35 H 0.086 0.914 36 H 0.426 0.574 37 H 0.104 0.896 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.258 -6.771 6.155 15.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.186 4.186 3 Si 0.812 3.188 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.174 1.174 7 C -0.493 4.493 8 H 0.112 0.888 9 C 0.108 3.892 10 C -0.277 4.277 11 C -0.021 4.021 12 C -0.891 4.891 13 S 2.822 3.178 14 O -0.988 6.988 15 O -0.997 6.997 16 N -0.869 5.869 17 C 0.027 3.973 18 C -0.149 4.149 19 H 0.178 0.822 20 C -0.167 4.167 21 C -0.179 4.179 22 H 0.193 0.807 23 C 0.340 3.660 24 O -0.436 6.436 25 O -0.323 6.323 26 C -0.039 4.039 27 C -0.228 4.228 28 H 0.109 0.891 29 H 0.133 0.867 30 H 0.148 0.852 31 H 0.264 0.736 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.170 0.830 35 H 0.105 0.895 36 H 0.287 0.713 37 H 0.122 0.878 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.098 -7.253 5.337 15.081 hybrid contribution 0.411 1.992 0.079 2.036 sum -11.688 -5.260 5.415 13.914 Atomic orbital electron populations 1.69876 1.09467 1.31775 1.30863 1.27051 0.95558 1.05307 0.90681 0.85030 0.79205 0.74739 0.79826 1.18581 1.18736 1.17439 1.20245 0.98987 0.92039 1.38009 0.88842 1.18203 0.90506 0.93497 0.86994 1.21288 1.05264 0.92708 1.08406 1.20481 0.91805 0.98011 0.91764 1.29662 1.16810 1.16852 1.25778 1.00208 0.72073 0.72727 0.72798 1.93462 1.61668 1.56557 1.87114 1.93456 1.74731 1.86332 1.45201 1.55287 1.38137 1.36415 1.57022 1.20913 0.85254 0.90440 1.00730 1.22695 0.92196 1.00950 0.99068 0.82176 1.23394 0.98220 1.03453 0.91589 1.22008 0.98618 0.91778 1.05471 0.80748 1.23025 0.79037 0.87037 0.76945 1.90847 1.40618 1.71627 1.40462 1.84434 1.39332 1.36297 1.72239 1.20383 0.96468 0.92159 0.94845 1.21322 1.01158 0.96861 1.03494 0.89146 0.86748 0.85208 0.73646 0.93160 0.91262 0.83018 0.89504 0.71264 0.87813 0.87468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.85 10.95 21.83 0.24 -39.61 16 2 C 0.03 1.59 5.14 85.26 0.44 2.02 16 3 Si 0.99 35.46 29.60 68.60 2.03 37.49 16 4 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 5 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 6 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 7 C -0.47 -23.94 9.05 23.46 0.21 -23.73 16 8 H 0.09 4.51 7.91 -2.91 -0.02 4.48 16 9 C 0.11 6.01 5.58 -21.29 -0.12 5.89 16 10 C -0.26 -12.63 9.80 22.73 0.22 -12.41 16 11 C 0.00 -0.04 9.49 22.22 0.21 0.17 16 12 C -0.80 -37.07 5.97 22.46 0.13 -36.93 16 13 S 2.73 107.74 5.73 -56.49 -0.32 107.42 16 14 O -1.00 -41.34 17.26 -128.00 -2.21 -43.55 16 15 O -1.01 -45.41 16.74 -128.00 -2.14 -47.55 16 16 N -1.11 -32.78 6.00 -187.47 -1.12 -33.91 16 17 C 0.15 4.61 4.76 86.38 0.41 5.02 16 18 C -0.13 -2.42 5.83 -10.79 -0.06 -2.48 16 19 H 0.16 1.91 8.14 -2.39 -0.02 1.89 16 20 C -0.13 -1.97 9.89 30.62 0.30 -1.66 16 21 C -0.16 -2.63 6.30 -11.52 -0.07 -2.70 16 22 H 0.18 1.60 8.14 -2.39 -0.02 1.58 16 23 C 0.50 11.79 8.09 71.23 0.58 12.37 16 24 O -0.55 -18.43 13.87 21.96 0.30 -18.13 16 25 O -0.51 -9.17 13.42 -51.43 -0.69 -9.86 16 26 C -0.02 -0.94 9.49 22.22 0.21 -0.73 16 27 C -0.21 -11.35 8.70 22.73 0.20 -11.15 16 28 H 0.30 13.24 8.30 -92.71 -0.77 12.47 16 29 H 0.11 5.12 8.06 -2.91 -0.02 5.09 16 30 H 0.13 5.18 7.60 -2.91 -0.02 5.16 16 31 H 0.43 9.34 8.65 -96.75 -0.84 8.50 16 32 H 0.05 1.79 7.30 -2.38 -0.02 1.78 16 33 H 0.07 2.44 6.55 -2.39 -0.02 2.42 16 34 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.74 8.03 -2.39 -0.02 1.72 16 36 H 0.43 4.92 9.10 -74.06 -0.67 4.25 16 37 H 0.10 5.13 7.59 -2.91 -0.02 5.11 16 38 H 0.11 6.01 6.15 -2.91 -0.02 6.00 16 Total: -1.00 -75.32 342.63 -1.63 -76.95 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: -0.38 Total: 37.08 kcal Atomic # 6 Polarization: -69.00 SS G_CDS: 2.66 Total: -66.33 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -0.89 Total: -73.52 kcal Atomic # 8 Polarization: -114.35 SS G_CDS: -4.74 Total: -119.08 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 2.03 Total: 37.49 kcal Atomic # 16 Polarization: 107.74 SS G_CDS: -0.32 Total: 107.42 kcal Total: -75.32 -1.63 -76.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715228300.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.036 kcal (2) G-P(sol) polarization free energy of solvation -75.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds