Wall clock time and date at job start Fri Apr 10 2020 14:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99853 * 2 1 4 4 H 1.48500 * 109.47259 * 240.00096 * 3 2 1 5 5 H 1.48500 * 109.46947 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46872 * 120.00374 * 3 2 1 7 7 C 1.37879 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99219 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00324 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47330 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47245 * 180.02562 * 10 9 7 12 12 O 1.42095 * 110.54683 * 68.37351 * 11 10 9 13 13 O 1.42097 * 110.54222 * 291.62025 * 11 10 9 14 14 O 1.52208 * 104.44991 * 179.97438 * 11 10 9 15 15 C 1.35715 * 113.99583 * 74.99556 * 14 11 10 16 16 C 1.39013 * 119.84654 * 269.94341 * 15 14 11 17 17 C 1.37821 * 120.12445 * 180.02562 * 16 15 14 18 18 C 1.39405 * 119.65346 * 0.02562 * 17 16 15 19 19 C 1.39877 * 120.11623 * 0.02562 * 18 17 16 20 20 C 1.37528 * 119.89703 * 359.97438 * 19 18 17 21 21 C 1.50563 * 119.19875 * 180.02562 * 19 18 17 22 22 C 1.52699 * 109.90863 * 326.04118 * 21 19 18 23 23 N 1.46033 * 111.04093 * 51.11196 * 22 21 19 24 24 C 1.34813 * 121.20129 * 322.26315 * 23 22 21 25 25 O 1.21578 * 120.43477 * 182.73667 * 24 23 22 26 26 H 0.96995 * 120.00205 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47277 * 59.99870 * 9 7 2 28 28 H 1.09001 * 109.47060 * 300.00117 * 9 7 2 29 29 H 1.09001 * 109.47249 * 59.99605 * 10 9 7 30 30 H 1.09001 * 109.46942 * 299.99941 * 10 9 7 31 31 H 1.08005 * 119.93319 * 0.04938 * 16 15 14 32 32 H 1.08007 * 120.17374 * 180.30057 * 17 16 15 33 33 H 1.07996 * 120.04942 * 179.97438 * 20 19 18 34 34 H 1.08996 * 109.39811 * 205.90996 * 21 19 18 35 35 H 1.08993 * 109.32897 * 86.12820 * 21 19 18 36 36 H 1.09007 * 109.16663 * 290.71280 * 22 21 19 37 37 H 1.08992 * 109.12349 * 171.49209 * 22 21 19 38 38 H 0.97003 * 119.40371 * 142.27422 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3384 -5.2330 -0.0013 12 8 0.6648 -5.4194 -1.2385 13 8 0.6641 -5.4201 1.2354 14 8 2.4250 -6.2989 -0.0019 15 6 3.0438 -6.4568 1.1956 16 6 4.1755 -5.7067 1.4938 17 6 4.8088 -5.8628 2.7079 18 6 4.3087 -6.7769 3.6341 19 6 3.1705 -7.5314 3.3313 20 6 2.5440 -7.3700 2.1177 21 6 2.6478 -8.5122 4.3470 22 6 3.8102 -9.1221 5.1270 23 7 4.6897 -8.0828 5.6552 24 6 4.9619 -6.9704 4.9441 25 8 5.7349 -6.1372 5.3758 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 2.8721 -3.6043 0.8894 30 1 2.8720 -3.6043 -0.8905 31 1 4.5590 -4.9998 0.7728 32 1 5.6853 -5.2769 2.9423 33 1 1.6652 -7.9516 1.8812 34 1 2.0993 -9.3040 3.8368 35 1 1.9803 -7.9959 5.0368 36 1 4.3824 -9.7731 4.4660 37 1 3.4150 -9.7110 5.9546 38 1 5.0855 -8.1950 6.5338 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809856034.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:12 Heat of formation + Delta-G solvation = -150.317489 kcal Electronic energy + Delta-G solvation = -25271.760411 eV Core-core repulsion = 21398.497014 eV Total energy + Delta-G solvation = -3873.263397 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.45530 -41.23924 -38.81022 -38.38403 -37.31841 -37.03805 -35.94561 -33.44813 -33.10060 -31.70915 -30.19542 -27.70957 -25.69905 -25.24142 -23.84164 -22.93315 -22.15869 -20.53101 -19.46083 -18.99757 -18.75541 -18.43137 -18.10614 -17.79273 -16.81220 -16.61419 -16.48970 -16.14714 -16.05234 -15.31290 -15.10314 -14.91150 -14.61807 -14.44802 -14.32584 -14.05341 -13.84735 -13.78004 -13.54119 -13.41659 -13.31716 -12.99499 -12.91689 -12.84364 -12.45642 -12.27257 -12.20439 -12.09274 -11.77049 -11.21931 -11.15365 -10.64083 -10.29743 -10.19317 -9.88249 -8.26576 -6.40235 -1.21531 -0.39718 0.04083 1.02500 1.41390 1.44403 1.51103 1.52395 2.18611 2.36752 2.46207 2.51025 2.85081 3.07352 3.34608 3.40810 3.49464 3.61281 3.84326 3.91701 3.93983 4.06557 4.17054 4.31718 4.45425 4.62143 4.68495 4.76784 4.82983 4.91994 4.96558 5.08123 5.12427 5.22880 5.24775 5.51781 5.67323 5.86360 6.04480 6.06920 6.72545 7.08332 7.29860 8.85506 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014649 B = 0.003666 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.963639 B = 7634.910523 C = 8903.917216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.024 3.976 10 C -0.610 4.610 11 S 2.600 3.400 12 O -0.968 6.968 13 O -0.975 6.975 14 O -0.661 6.661 15 C 0.073 3.927 16 C -0.144 4.144 17 C -0.043 4.043 18 C -0.141 4.141 19 C -0.030 4.030 20 C -0.109 4.109 21 C -0.107 4.107 22 C 0.110 3.890 23 N -0.711 5.711 24 C 0.564 3.436 25 O -0.575 6.575 26 H 0.268 0.732 27 H 0.011 0.989 28 H 0.012 0.988 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.132 0.868 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.132 0.868 38 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.749 -22.014 10.260 26.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.095 0.905 9 C -0.014 4.014 10 C -0.740 4.740 11 S 2.701 3.299 12 O -0.966 6.966 13 O -0.973 6.973 14 O -0.620 6.620 15 C 0.031 3.969 16 C -0.163 4.163 17 C -0.062 4.062 18 C -0.145 4.145 19 C -0.031 4.031 20 C -0.129 4.129 21 C -0.144 4.144 22 C -0.013 4.013 23 N -0.364 5.364 24 C 0.351 3.649 25 O -0.456 6.456 26 H 0.076 0.924 27 H 0.029 0.971 28 H 0.030 0.970 29 H 0.164 0.836 30 H 0.169 0.831 31 H 0.187 0.813 32 H 0.177 0.823 33 H 0.178 0.822 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.150 0.850 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 9.370 -22.123 10.088 26.058 hybrid contribution 0.331 1.686 -0.251 1.736 sum 9.701 -20.437 9.838 24.669 Atomic orbital electron populations 1.70083 1.07985 1.28416 1.50725 1.26075 0.95841 1.03737 0.94343 0.85393 0.78175 0.77449 0.79423 1.18777 1.20961 1.18903 1.21477 0.94059 0.90668 1.51745 0.90499 1.18797 0.93346 0.92478 0.96815 1.30614 1.13537 1.16911 1.12988 1.05231 0.74827 0.76453 0.73404 1.93544 1.71573 1.85002 1.46496 1.93554 1.73329 1.84095 1.46337 1.85699 1.64497 1.70582 1.41248 1.18718 0.95442 1.01238 0.81462 1.21669 0.94661 1.00851 0.99168 1.21207 0.99435 0.94838 0.90731 1.20135 0.98343 1.00168 0.95865 1.20209 0.92808 0.95813 0.94227 1.21324 1.00915 0.98165 0.92520 1.21123 0.99008 0.98189 0.96088 1.21660 0.90153 0.88796 1.00659 1.45723 1.49606 1.19618 1.21412 1.18179 0.80166 0.81882 0.84647 1.90824 1.37588 1.45076 1.72089 0.92353 0.97102 0.96965 0.83602 0.83069 0.81348 0.82334 0.82189 0.84992 0.88156 0.89849 0.84959 0.74599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.54 -29.68 9.11 25.60 0.23 -29.44 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.02 1.25 4.98 29.84 0.15 1.40 16 10 C -0.61 -23.02 5.38 71.98 0.39 -22.64 16 11 S 2.60 95.54 5.16 -56.49 -0.29 95.24 16 12 O -0.97 -41.93 18.09 -118.57 -2.15 -44.08 16 13 O -0.97 -38.58 16.26 -118.57 -1.93 -40.51 16 14 O -0.66 -19.89 10.03 -59.46 -0.60 -20.49 16 15 C 0.07 1.96 4.81 22.66 0.11 2.07 16 16 C -0.14 -3.39 8.43 22.36 0.19 -3.20 16 17 C -0.04 -0.99 9.63 22.45 0.22 -0.77 16 18 C -0.14 -3.10 5.78 -20.11 -0.12 -3.22 16 19 C -0.03 -0.55 5.68 -19.68 -0.11 -0.66 16 20 C -0.11 -2.48 8.71 22.30 0.19 -2.28 16 21 C -0.11 -0.96 6.04 29.70 0.18 -0.78 16 22 C 0.11 0.56 7.03 86.37 0.61 1.16 16 23 N -0.71 -8.66 5.58 -467.61 -2.61 -11.27 16 24 C 0.56 12.32 7.78 86.73 0.67 13.00 16 25 O -0.57 -17.16 17.45 -3.96 -0.07 -17.23 16 26 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 27 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.15 4.80 6.60 -2.39 -0.02 4.78 16 30 H 0.15 4.92 8.14 -2.39 -0.02 4.90 16 31 H 0.17 3.25 7.48 -2.91 -0.02 3.23 16 32 H 0.16 3.31 7.84 -2.91 -0.02 3.28 16 33 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 34 H 0.13 0.47 8.07 -2.39 -0.02 0.45 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.29 8.14 -2.38 -0.02 0.27 16 37 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 38 H 0.42 3.66 8.92 -92.71 -0.83 2.84 16 Total: -1.00 -82.04 337.42 -1.87 -83.92 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.28 Total: 10.19 kcal Atomic # 6 Polarization: -48.13 SS G_CDS: 3.17 Total: -44.96 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: -2.32 Total: -67.33 kcal Atomic # 8 Polarization: -117.57 SS G_CDS: -4.74 Total: -122.31 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 95.54 SS G_CDS: -0.29 Total: 95.24 kcal Total: -82.04 -1.87 -83.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809856034.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.402 kcal (2) G-P(sol) polarization free energy of solvation -82.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds