Wall clock time and date at job start Fri Apr 10 2020 14:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86790 * 120.00381 * 2 1 4 4 H 1.48501 * 109.47205 * 239.99911 * 3 2 1 5 5 H 1.48503 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47339 * 119.99713 * 3 2 1 7 7 C 1.37881 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00237 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00010 * 0.02562 * 7 2 1 10 10 S 1.81403 * 109.47310 * 179.97438 * 9 7 2 11 11 O 1.42098 * 110.54133 * 68.37000 * 10 9 7 12 12 O 1.42102 * 110.53923 * 291.62443 * 10 9 7 13 13 N 1.65594 * 104.44879 * 179.97438 * 10 9 7 14 14 C 1.34778 * 120.00331 * 64.99936 * 13 10 9 15 15 O 1.21289 * 119.99547 * 0.02562 * 14 13 10 16 16 C 1.50697 * 120.00267 * 179.97438 * 14 13 10 17 17 H 1.09002 * 109.69701 * 300.00227 * 16 14 13 18 18 C 1.53409 * 109.69642 * 60.56364 * 16 14 13 19 19 O 1.42824 * 108.37510 * 184.45627 * 18 16 14 20 20 C 1.35842 * 117.86959 * 310.81998 * 19 18 16 21 21 C 1.39142 * 118.51048 * 197.17453 * 20 19 18 22 22 C 1.37968 * 120.21802 * 180.15864 * 21 20 19 23 23 C 1.38295 * 119.95770 * 0.03651 * 22 21 20 24 24 C 1.38102 * 119.98330 * 359.93104 * 23 22 21 25 25 C 1.38383 * 121.79774 * 17.22998 * 20 19 18 26 26 C 1.50860 * 121.41871 * 359.49164 * 25 20 19 27 27 H 0.97006 * 119.99645 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47202 * 59.99640 * 9 7 2 29 29 H 1.09001 * 109.47272 * 299.99855 * 9 7 2 30 30 H 0.96998 * 120.00089 * 244.99206 * 13 10 9 31 31 H 1.09003 * 109.68537 * 304.17817 * 18 16 14 32 32 H 1.09004 * 109.68212 * 64.69664 * 18 16 14 33 33 H 1.08001 * 119.89228 * 0.17490 * 21 20 19 34 34 H 1.08004 * 120.02218 * 180.02562 * 22 21 20 35 35 H 1.07997 * 120.00543 * 179.97438 * 23 22 21 36 36 H 1.07993 * 119.84168 * 179.97438 * 24 23 22 37 37 H 1.09003 * 109.43732 * 257.80060 * 26 25 20 38 38 H 1.09000 * 109.48181 * 137.90033 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 16 2.4295 -3.8781 0.0005 11 8 3.1263 -3.9384 1.2375 12 8 3.1262 -3.9385 -1.2365 13 7 1.4791 -5.2341 0.0013 14 6 0.6879 -5.5032 -1.0562 15 8 0.6726 -4.7523 -2.0086 16 6 -0.1766 -6.7375 -1.0558 17 1 0.4501 -7.6249 -0.9666 18 6 -1.1607 -6.6791 0.1196 19 8 -1.8924 -7.9051 0.1555 20 6 -2.4514 -8.3452 -1.0017 21 6 -3.4495 -9.3121 -0.9315 22 6 -4.0391 -9.7865 -2.0852 23 6 -3.6372 -9.3009 -3.3161 24 6 -2.6474 -8.3407 -3.3896 25 6 -2.0535 -7.8590 -2.2347 26 6 -0.9824 -6.8035 -2.3555 27 1 -0.4850 0.8401 -0.0004 28 1 0.6244 -2.5571 -0.8897 29 1 0.6238 -2.5568 0.8903 30 1 1.4917 -5.8349 0.7627 31 1 -0.6114 -6.5519 1.0524 32 1 -1.8482 -5.8445 -0.0184 33 1 -3.7639 -9.6923 0.0292 34 1 -4.8138 -10.5368 -2.0270 35 1 -4.0979 -9.6720 -4.2197 36 1 -2.3351 -7.9634 -4.3520 37 1 -1.4468 -5.8355 -2.5440 38 1 -0.3175 -7.0533 -3.1823 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821584273.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:41 Heat of formation + Delta-G solvation = -131.445982 kcal Electronic energy + Delta-G solvation = -25206.353927 eV Core-core repulsion = 21333.908860 eV Total energy + Delta-G solvation = -3872.445067 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22430 -39.70895 -37.67609 -36.33517 -35.26027 -34.48514 -34.24933 -33.40515 -30.98631 -30.45939 -29.11981 -26.00606 -25.05354 -23.59410 -22.82282 -21.84784 -20.08579 -19.33224 -18.11509 -17.97658 -17.34566 -16.68636 -16.34184 -16.02742 -15.80547 -15.32259 -15.02485 -14.76258 -14.48210 -14.34793 -14.15498 -13.86352 -13.58466 -13.43460 -13.20252 -12.57815 -12.25180 -12.04435 -12.02758 -11.71659 -11.52828 -11.40306 -11.37094 -11.27961 -11.11664 -10.92353 -10.85610 -10.72921 -10.60032 -10.09474 -9.87636 -9.24430 -9.00948 -8.74596 -8.39350 -6.37690 -4.49254 0.93035 1.08619 1.19392 2.15720 2.92828 3.08255 3.21790 3.24336 3.28849 3.53336 4.06812 4.17819 4.21972 4.33405 4.51900 4.58729 4.67141 4.81541 4.87642 4.94543 5.05305 5.11194 5.12764 5.19678 5.24101 5.31964 5.44322 5.67626 5.73966 5.88287 6.04720 6.24073 6.30496 6.49036 6.52611 6.66950 6.85941 7.17388 7.36244 7.56544 7.69004 8.51490 9.18538 10.73981 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.020961 B = 0.003110 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.502001 B = 9001.117778 C = 9468.698370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.070 0.930 9 C -0.402 4.402 10 S 2.551 3.449 11 O -0.967 6.967 12 O -0.951 6.951 13 N -1.060 6.060 14 C 0.542 3.458 15 O -0.477 6.477 16 C -0.149 4.149 17 H 0.120 0.880 18 C 0.069 3.931 19 O -0.308 6.308 20 C 0.126 3.874 21 C -0.147 4.147 22 C -0.091 4.091 23 C -0.151 4.151 24 C -0.082 4.082 25 C -0.153 4.153 26 C -0.066 4.066 27 H 0.270 0.730 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.425 0.575 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.097 0.903 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.550 -18.637 -1.761 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.129 4.129 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.576 4.576 8 H 0.088 0.912 9 C -0.539 4.539 10 S 2.653 3.347 11 O -0.957 6.957 12 O -0.941 6.941 13 N -0.820 5.820 14 C 0.327 3.673 15 O -0.347 6.347 16 C -0.172 4.172 17 H 0.138 0.862 18 C -0.007 4.007 19 O -0.222 6.222 20 C 0.081 3.919 21 C -0.165 4.165 22 C -0.110 4.110 23 C -0.170 4.170 24 C -0.101 4.101 25 C -0.153 4.153 26 C -0.103 4.103 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.259 0.741 31 H 0.135 0.865 32 H 0.099 0.901 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.115 0.885 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.765 -18.126 -2.306 19.854 hybrid contribution -0.095 0.780 0.312 0.845 sum -7.860 -17.347 -1.994 19.148 Atomic orbital electron populations 1.69938 1.06269 1.27943 1.47088 1.24913 0.95049 0.99592 0.93301 0.86391 0.79626 0.81222 0.79497 1.19347 1.20639 1.19374 1.20237 0.92728 0.88426 1.56240 0.91158 1.27595 1.09805 1.09126 1.07382 1.07249 0.77340 0.75956 0.74125 1.93527 1.71081 1.85885 1.45235 1.93535 1.70751 1.85160 1.44699 1.55571 1.56073 1.43961 1.26372 1.20058 0.78986 0.86860 0.81436 1.90934 1.63399 1.48033 1.32296 1.22122 0.97881 0.98303 0.98919 0.86233 1.22986 0.93366 0.85804 0.98519 1.86027 1.66384 1.39462 1.30306 1.18746 0.93126 0.95335 0.84674 1.20591 0.96704 0.99615 0.99639 1.20931 0.99051 0.99155 0.91817 1.21035 0.99096 0.98968 0.97862 1.20931 0.95615 0.96015 0.97497 1.19879 1.00963 1.01766 0.92738 1.20424 0.95057 0.98578 0.96261 0.92039 0.88397 0.89641 0.74093 0.86473 0.90147 0.85207 0.85488 0.85857 0.85527 0.88491 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.62 13.29 55.43 0.74 -23.89 16 2 C 0.08 2.15 5.46 -17.82 -0.10 2.05 16 3 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.76 9.13 -34.44 -0.31 -15.08 16 8 H 0.07 1.89 7.71 -52.49 -0.40 1.48 16 9 C -0.40 -9.66 5.64 36.01 0.20 -9.46 16 10 S 2.55 53.12 5.03 -107.50 -0.54 52.58 16 11 O -0.97 -21.36 18.08 -57.54 -1.04 -22.40 16 12 O -0.95 -23.02 17.04 -64.79 -1.10 -24.13 16 13 N -1.06 -15.68 5.48 31.22 0.17 -15.51 16 14 C 0.54 8.17 6.90 -10.99 -0.08 8.10 16 15 O -0.48 -9.19 13.90 -11.57 -0.16 -9.35 16 16 C -0.15 -1.66 2.75 -91.52 -0.25 -1.91 16 17 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 18 C 0.07 0.69 6.26 37.37 0.23 0.92 16 19 O -0.31 -3.41 10.27 -19.24 -0.20 -3.61 16 20 C 0.13 1.41 6.47 -39.19 -0.25 1.16 16 21 C -0.15 -1.42 9.94 -39.35 -0.39 -1.81 16 22 C -0.09 -0.76 10.04 -39.66 -0.40 -1.16 16 23 C -0.15 -1.29 10.04 -39.61 -0.40 -1.68 16 24 C -0.08 -0.79 9.67 -39.53 -0.38 -1.18 16 25 C -0.15 -1.67 5.75 -104.39 -0.60 -2.27 16 26 C -0.07 -0.75 4.67 -27.77 -0.13 -0.88 16 27 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.10 2.45 7.19 -51.92 -0.37 2.08 16 29 H 0.09 1.96 8.14 -51.92 -0.42 1.54 16 30 H 0.42 4.38 8.22 -34.47 -0.28 4.09 16 31 H 0.12 0.89 7.53 -51.93 -0.39 0.49 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 34 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.10 1.20 7.70 -51.93 -0.40 0.80 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 338.12 15.07 5.10 5.10 Total: -1.00 -35.64 338.12 -9.29 -44.93 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.37 Total: 3.63 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -2.86 Total: -23.20 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.91 Total: -39.39 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: -2.50 Total: -59.49 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 53.12 SS G_CDS: -0.54 Total: 52.58 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.64 -9.29 -44.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821584273.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.518 kcal (2) G-P(sol) polarization free energy of solvation -35.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds