Wall clock time and date at job start Fri Apr 10 2020 14:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86790 * 120.00381 * 2 1 4 4 H 1.48501 * 109.47205 * 239.99911 * 3 2 1 5 5 H 1.48503 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47339 * 119.99713 * 3 2 1 7 7 C 1.37881 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00237 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00010 * 0.02562 * 7 2 1 10 10 S 1.81403 * 109.47310 * 179.97438 * 9 7 2 11 11 O 1.42098 * 110.54133 * 68.37000 * 10 9 7 12 12 O 1.42102 * 110.53923 * 291.62443 * 10 9 7 13 13 N 1.65594 * 104.44879 * 179.97438 * 10 9 7 14 14 C 1.34778 * 120.00331 * 64.99936 * 13 10 9 15 15 O 1.21289 * 119.99547 * 0.02562 * 14 13 10 16 16 C 1.50697 * 120.00267 * 179.97438 * 14 13 10 17 17 H 1.09002 * 109.69701 * 300.00227 * 16 14 13 18 18 C 1.53409 * 109.69642 * 60.56364 * 16 14 13 19 19 O 1.42824 * 108.37510 * 184.45627 * 18 16 14 20 20 C 1.35842 * 117.86959 * 310.81998 * 19 18 16 21 21 C 1.39142 * 118.51048 * 197.17453 * 20 19 18 22 22 C 1.37968 * 120.21802 * 180.15864 * 21 20 19 23 23 C 1.38295 * 119.95770 * 0.03651 * 22 21 20 24 24 C 1.38102 * 119.98330 * 359.93104 * 23 22 21 25 25 C 1.38383 * 121.79774 * 17.22998 * 20 19 18 26 26 C 1.50860 * 121.41871 * 359.49164 * 25 20 19 27 27 H 0.97006 * 119.99645 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47202 * 59.99640 * 9 7 2 29 29 H 1.09001 * 109.47272 * 299.99855 * 9 7 2 30 30 H 0.96998 * 120.00089 * 244.99206 * 13 10 9 31 31 H 1.09003 * 109.68537 * 304.17817 * 18 16 14 32 32 H 1.09004 * 109.68212 * 64.69664 * 18 16 14 33 33 H 1.08001 * 119.89228 * 0.17490 * 21 20 19 34 34 H 1.08004 * 120.02218 * 180.02562 * 22 21 20 35 35 H 1.07997 * 120.00543 * 179.97438 * 23 22 21 36 36 H 1.07993 * 119.84168 * 179.97438 * 24 23 22 37 37 H 1.09003 * 109.43732 * 257.80060 * 26 25 20 38 38 H 1.09000 * 109.48181 * 137.90033 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 16 2.4295 -3.8781 0.0005 11 8 3.1263 -3.9384 1.2375 12 8 3.1262 -3.9385 -1.2365 13 7 1.4791 -5.2341 0.0013 14 6 0.6879 -5.5032 -1.0562 15 8 0.6726 -4.7523 -2.0086 16 6 -0.1766 -6.7375 -1.0558 17 1 0.4501 -7.6249 -0.9666 18 6 -1.1607 -6.6791 0.1196 19 8 -1.8924 -7.9051 0.1555 20 6 -2.4514 -8.3452 -1.0017 21 6 -3.4495 -9.3121 -0.9315 22 6 -4.0391 -9.7865 -2.0852 23 6 -3.6372 -9.3009 -3.3161 24 6 -2.6474 -8.3407 -3.3896 25 6 -2.0535 -7.8590 -2.2347 26 6 -0.9824 -6.8035 -2.3555 27 1 -0.4850 0.8401 -0.0004 28 1 0.6244 -2.5571 -0.8897 29 1 0.6238 -2.5568 0.8903 30 1 1.4917 -5.8349 0.7627 31 1 -0.6114 -6.5519 1.0524 32 1 -1.8482 -5.8445 -0.0184 33 1 -3.7639 -9.6923 0.0292 34 1 -4.8138 -10.5368 -2.0270 35 1 -4.0979 -9.6720 -4.2197 36 1 -2.3351 -7.9634 -4.3520 37 1 -1.4468 -5.8355 -2.5440 38 1 -0.3175 -7.0533 -3.1823 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821584273.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:40 Heat of formation + Delta-G solvation = -157.449306 kcal Electronic energy + Delta-G solvation = -25207.481516 eV Core-core repulsion = 21333.908860 eV Total energy + Delta-G solvation = -3873.572656 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.17044 -40.85078 -38.43764 -38.12410 -37.08644 -35.77640 -35.43722 -35.27307 -31.78891 -31.18527 -31.10996 -26.82069 -26.08931 -25.55677 -23.58978 -22.90792 -21.08409 -20.81299 -19.35595 -18.99958 -18.87452 -18.34941 -17.54089 -17.34367 -16.87567 -16.65100 -16.34494 -16.13206 -15.98520 -15.43264 -15.17381 -14.78040 -14.54527 -14.42548 -14.30655 -14.11332 -13.97393 -13.63324 -13.50903 -13.23349 -13.12821 -12.76935 -12.73729 -12.57185 -12.51666 -12.19150 -12.11990 -11.90420 -11.87975 -11.71225 -11.31479 -11.08177 -10.79851 -9.73455 -9.14578 -8.44249 -6.63263 -0.79166 0.36763 0.47058 0.89752 1.36870 1.40706 1.48564 1.53674 2.19545 2.29002 2.71395 2.81354 2.90008 2.99393 3.24480 3.38905 3.49067 3.78992 3.86653 3.93068 4.07254 4.28185 4.34638 4.42309 4.51048 4.60248 4.63717 4.69831 4.72680 4.83709 4.94039 5.10676 5.27367 5.34669 5.52969 5.61525 5.62206 5.68389 5.85493 6.33554 6.40336 6.46409 7.08609 8.68230 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.020961 B = 0.003110 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.502001 B = 9001.117778 C = 9468.698370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.027 3.973 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.570 4.570 8 H 0.068 0.932 9 C -0.420 4.420 10 S 2.597 3.403 11 O -0.976 6.976 12 O -0.984 6.984 13 N -1.041 6.041 14 C 0.544 3.456 15 O -0.520 6.520 16 C -0.136 4.136 17 H 0.147 0.853 18 C 0.066 3.934 19 O -0.311 6.311 20 C 0.104 3.896 21 C -0.156 4.156 22 C -0.089 4.089 23 C -0.152 4.152 24 C -0.094 4.094 25 C -0.167 4.167 26 C -0.066 4.066 27 H 0.275 0.725 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.448 0.552 31 H 0.145 0.855 32 H 0.072 0.928 33 H 0.142 0.858 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.136 0.864 37 H 0.078 0.922 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.013 -20.221 -1.329 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.177 4.177 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.609 4.609 8 H 0.086 0.914 9 C -0.555 4.555 10 S 2.698 3.302 11 O -0.967 6.967 12 O -0.974 6.974 13 N -0.807 5.807 14 C 0.331 3.669 15 O -0.392 6.392 16 C -0.159 4.159 17 H 0.164 0.836 18 C -0.009 4.009 19 O -0.225 6.225 20 C 0.059 3.941 21 C -0.175 4.175 22 C -0.107 4.107 23 C -0.170 4.170 24 C -0.112 4.112 25 C -0.168 4.168 26 C -0.104 4.104 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.288 0.712 31 H 0.163 0.837 32 H 0.090 0.910 33 H 0.160 0.840 34 H 0.174 0.826 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.097 0.903 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.234 -19.717 -1.839 21.446 hybrid contribution -0.047 1.136 0.141 1.145 sum -8.281 -18.581 -1.698 20.414 Atomic orbital electron populations 1.70020 1.07555 1.29033 1.47650 1.25839 0.95987 1.03155 0.92708 0.85495 0.78717 0.77230 0.79874 1.19020 1.19355 1.18216 1.20692 0.93122 0.90431 1.56628 0.91427 1.27656 1.10672 1.10547 1.06622 1.05532 0.76173 0.75585 0.72958 1.93507 1.71352 1.86291 1.45542 1.93492 1.71640 1.85879 1.46437 1.54978 1.55371 1.42693 1.27623 1.20790 0.78429 0.87384 0.80300 1.90927 1.64598 1.49710 1.33990 1.22124 0.97606 0.96610 0.99536 0.83560 1.23123 0.93136 0.85573 0.99109 1.86029 1.66527 1.39533 1.30417 1.19021 0.94105 0.96298 0.84672 1.20881 0.96403 0.99327 1.00854 1.21317 0.99039 0.99089 0.91208 1.21382 0.98372 0.98146 0.99068 1.21175 0.96018 0.96450 0.97573 1.19885 1.01385 1.02103 0.93398 1.20383 0.95379 0.98099 0.96497 0.91638 0.90209 0.89227 0.71190 0.83735 0.90952 0.84021 0.82643 0.83456 0.84608 0.90338 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.75 13.29 21.45 0.28 -51.46 16 2 C 0.03 1.49 5.46 84.66 0.46 1.95 16 3 Si 0.97 42.70 29.54 68.60 2.03 44.72 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.57 -31.97 9.13 25.60 0.23 -31.74 16 8 H 0.07 3.70 7.71 -2.91 -0.02 3.68 16 9 C -0.42 -20.73 5.64 71.24 0.40 -20.33 16 10 S 2.60 108.12 5.03 -56.49 -0.28 107.84 16 11 O -0.98 -42.32 18.08 -127.65 -2.31 -44.63 16 12 O -0.98 -48.04 17.04 -120.72 -2.06 -50.10 16 13 N -1.04 -29.72 5.48 -173.53 -0.95 -30.67 16 14 C 0.54 16.20 6.90 87.66 0.60 16.81 16 15 O -0.52 -20.55 13.90 13.31 0.19 -20.37 16 16 C -0.14 -2.87 2.75 -11.38 -0.03 -2.90 16 17 H 0.15 2.36 8.14 -2.39 -0.02 2.34 16 18 C 0.07 1.24 6.26 72.12 0.45 1.69 16 19 O -0.31 -6.43 10.27 -91.78 -0.94 -7.37 16 20 C 0.10 2.19 6.47 22.52 0.15 2.34 16 21 C -0.16 -2.73 9.94 22.42 0.22 -2.51 16 22 C -0.09 -1.24 10.04 22.22 0.22 -1.02 16 23 C -0.15 -2.22 10.04 22.25 0.22 -2.00 16 24 C -0.09 -1.70 9.67 22.30 0.22 -1.49 16 25 C -0.17 -3.53 5.75 -19.72 -0.11 -3.64 16 26 C -0.07 -1.50 4.67 29.92 0.14 -1.36 16 27 H 0.27 14.57 8.31 -92.70 -0.77 13.80 16 28 H 0.08 4.19 7.19 -2.39 -0.02 4.17 16 29 H 0.09 4.23 8.14 -2.39 -0.02 4.21 16 30 H 0.45 8.21 8.22 -96.75 -0.80 7.41 16 31 H 0.15 1.83 7.53 -2.39 -0.02 1.81 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 34 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 36 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.08 2.05 7.70 -2.39 -0.02 2.03 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -77.63 338.12 -0.56 -78.19 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.31 Total: 18.05 kcal Atomic # 6 Polarization: -47.38 SS G_CDS: 3.18 Total: -44.20 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -0.67 Total: -82.13 kcal Atomic # 8 Polarization: -117.34 SS G_CDS: -5.12 Total: -122.46 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 108.12 SS G_CDS: -0.28 Total: 107.84 kcal Total: -77.63 -0.56 -78.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821584273.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.259 kcal (2) G-P(sol) polarization free energy of solvation -77.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds