Wall clock time and date at job start Fri Apr 10 2020 14:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00244 * 2 1 4 4 H 1.48493 * 109.47649 * 240.00647 * 3 2 1 5 5 H 1.48504 * 109.46893 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47142 * 120.00292 * 3 2 1 7 7 C 1.37881 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00418 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99644 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47237 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00282 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00049 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00194 * 179.97438 * 11 10 9 14 14 O 1.45192 * 109.47314 * 180.02562 * 13 11 10 15 15 C 1.34770 * 117.00017 * 180.02562 * 14 13 11 16 16 O 1.21520 * 120.00314 * 359.97438 * 15 14 13 17 17 C 1.47258 * 119.99940 * 179.97438 * 15 14 13 18 18 C 1.40128 * 120.18266 * 270.00312 * 17 15 14 19 19 C 1.39135 * 119.70793 * 179.97438 * 18 17 15 20 20 C 1.38540 * 119.97660 * 359.73446 * 19 18 17 21 21 C 1.38396 * 120.44306 * 0.02622 * 20 19 18 22 22 C 1.38092 * 120.33758 * 359.95041 * 21 20 19 23 23 F 1.35096 * 120.05250 * 180.02562 * 22 21 20 24 24 O 1.36604 * 108.59071 * 179.75511 * 19 18 17 25 25 C 1.43989 * 105.43160 * 17.26514 * 24 19 18 26 26 O 1.36212 * 131.54059 * 359.66373 * 18 17 15 27 27 H 0.97002 * 119.99662 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47419 * 60.00136 * 9 7 2 29 29 H 1.08999 * 109.47061 * 299.99722 * 9 7 2 30 30 H 0.97005 * 119.99980 * 359.97438 * 10 9 7 31 31 H 1.09001 * 109.47305 * 59.99944 * 13 11 10 32 32 H 1.09004 * 109.47308 * 300.00334 * 13 11 10 33 33 H 1.07997 * 119.77870 * 180.02562 * 20 19 18 34 34 H 1.08002 * 119.83776 * 179.97438 * 21 20 19 35 35 H 1.09005 * 110.58015 * 91.47690 * 25 24 19 36 36 H 1.09000 * 110.57951 * 214.22065 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0009 13 6 2.7329 -6.0288 -0.0006 14 8 2.0070 -7.2862 -0.0005 15 6 2.7410 -8.4165 -0.0004 16 8 3.9545 -8.3530 -0.0009 17 6 2.0725 -9.7286 0.0003 18 6 1.7531 -10.3559 1.2119 19 6 1.1209 -11.5953 1.2010 20 6 0.8053 -12.2008 -0.0044 21 6 1.1151 -11.5814 -1.2026 22 6 1.7420 -10.3510 -1.2101 23 9 2.0412 -9.7512 -2.3830 24 8 0.9238 -11.9950 2.4923 25 6 1.0726 -10.8047 3.2888 26 8 1.9528 -9.9776 2.5051 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6248 -2.5571 0.8897 30 1 3.1567 -3.4355 -0.0009 31 1 3.3603 -5.9710 0.8889 32 1 3.3590 -5.9712 -0.8911 33 1 0.3143 -13.1627 -0.0091 34 1 0.8649 -12.0624 -2.1366 35 1 0.1092 -10.3141 3.4283 36 1 1.5234 -11.0423 4.2523 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909851223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:15 Heat of formation + Delta-G solvation = -189.143438 kcal Electronic energy + Delta-G solvation = -26397.456814 eV Core-core repulsion = 21956.296622 eV Total energy + Delta-G solvation = -4441.160192 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.089 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.44261 -42.79140 -40.59647 -38.79671 -37.98897 -36.88243 -36.38811 -34.26526 -32.43015 -31.89923 -30.27879 -29.21173 -26.79947 -26.35681 -24.92847 -23.57681 -22.65891 -21.52846 -19.97459 -19.15919 -18.83379 -18.37016 -17.87578 -17.53672 -17.09359 -16.48594 -16.29543 -16.11606 -15.83027 -15.52872 -15.36300 -15.11477 -14.75869 -14.54287 -14.30445 -13.85871 -13.53365 -13.36974 -13.22245 -13.14421 -12.83130 -12.67211 -12.21772 -11.99818 -11.79258 -11.29670 -11.04601 -10.92109 -10.88926 -10.77053 -10.35410 -9.59500 -9.46548 -9.20005 -8.78832 -8.62206 -8.00460 -6.20198 -4.27758 0.19337 0.38701 1.74355 2.04282 2.20224 2.71996 2.79118 3.15074 3.23993 3.28807 3.30228 3.65591 3.72249 3.96352 4.15792 4.28549 4.30918 4.35336 4.50016 4.60350 4.77009 5.03335 5.14935 5.16080 5.20275 5.21839 5.31104 5.33665 5.45803 5.75989 6.09265 6.41804 7.20521 7.27746 7.40809 7.44732 7.60326 7.91045 8.48029 8.69608 8.94382 9.38554 10.89915 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.022388 B = 0.002384 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.397667 B =11741.430613 C =12215.179503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.252 3.748 10 N -0.705 5.705 11 C 0.501 3.499 12 O -0.533 6.533 13 C 0.046 3.954 14 O -0.315 6.315 15 C 0.520 3.480 16 O -0.484 6.484 17 C -0.122 4.122 18 C 0.107 3.893 19 C 0.023 3.977 20 C -0.049 4.049 21 C -0.141 4.141 22 C 0.155 3.845 23 F -0.115 7.115 24 O -0.300 6.300 25 C 0.212 3.788 26 O -0.295 6.295 27 H 0.267 0.733 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.393 0.607 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.155 0.845 34 H 0.163 0.837 35 H 0.096 0.904 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.107 -26.733 2.143 26.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.283 3.717 12 O -0.410 6.410 13 C -0.031 4.031 14 O -0.229 6.229 15 C 0.361 3.639 16 O -0.371 6.371 17 C -0.125 4.125 18 C 0.061 3.939 19 C -0.022 4.022 20 C -0.068 4.068 21 C -0.160 4.160 22 C 0.135 3.865 23 F -0.093 7.093 24 O -0.216 6.216 25 C 0.101 3.899 26 O -0.209 6.209 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.226 0.774 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.173 0.827 34 H 0.181 0.819 35 H 0.114 0.886 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.525 -26.680 2.325 26.900 hybrid contribution 1.101 1.321 0.100 1.723 sum 3.626 -25.359 2.424 25.731 Atomic orbital electron populations 1.69962 1.06129 1.27538 1.48580 1.24950 0.94936 0.99488 0.94587 0.86442 0.79394 0.82153 0.78740 1.20009 1.21038 1.20032 1.21169 0.93311 0.90290 1.53661 0.91789 1.19180 0.88149 0.81472 0.98052 1.46359 1.11566 1.05247 1.72392 1.19818 0.89047 0.83938 0.78849 1.90713 1.16262 1.84513 1.49529 1.22992 0.94610 0.80591 1.04938 1.86718 1.39709 1.13715 1.82794 1.20565 0.85671 0.84680 0.72995 1.90897 1.14287 1.87781 1.44155 1.17754 1.09998 0.94349 0.90437 1.19131 0.96629 0.93216 0.84933 1.19605 1.02611 0.93200 0.86752 1.20024 0.98744 1.01049 0.86983 1.20835 1.01720 0.93834 0.99602 1.16975 0.98096 0.92039 0.79384 1.91606 1.90693 1.83103 1.43914 1.87439 1.88481 1.32182 1.13543 1.25854 0.94610 0.76413 0.93033 1.87421 1.60525 1.59674 1.13329 0.92301 0.95206 0.95248 0.77371 0.88174 0.88107 0.82709 0.81942 0.88635 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.55 -14.65 9.28 -34.44 -0.32 -14.97 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.60 5.43 -5.19 -0.03 6.57 16 10 N -0.71 -14.72 5.55 -61.48 -0.34 -15.06 16 11 C 0.50 10.25 7.91 -10.99 -0.09 10.17 16 12 O -0.53 -13.24 16.50 -14.11 -0.23 -13.47 16 13 C 0.05 0.74 5.95 36.00 0.21 0.95 16 14 O -0.32 -5.48 9.77 -47.37 -0.46 -5.94 16 15 C 0.52 8.26 7.01 34.40 0.24 8.50 16 16 O -0.48 -8.30 16.90 -19.28 -0.33 -8.62 16 17 C -0.12 -1.61 5.76 -104.84 -0.60 -2.22 16 18 C 0.11 1.27 6.90 -38.54 -0.27 1.00 16 19 C 0.02 0.21 7.15 -39.14 -0.28 -0.07 16 20 C -0.05 -0.33 10.04 -39.41 -0.40 -0.72 16 21 C -0.14 -0.99 10.00 -39.58 -0.40 -1.39 16 22 C 0.16 1.69 7.29 -38.96 -0.28 1.41 16 23 F -0.12 -1.39 16.83 2.25 0.04 -1.35 16 24 O -0.30 -2.57 11.41 -46.04 -0.53 -3.09 16 25 C 0.21 1.50 8.89 101.05 0.90 2.40 16 26 O -0.29 -3.40 11.39 -44.76 -0.51 -3.91 16 27 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 28 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 31 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 34 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.14 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 338.73 15.07 5.10 5.10 Total: -1.00 -35.84 338.73 -6.20 -42.04 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -3.25 Total: 0.45 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: -1.40 Total: 13.31 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.40 Total: -40.19 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -2.06 Total: -35.03 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.84 -6.20 -42.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909851223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.106 kcal (2) G-P(sol) polarization free energy of solvation -35.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds