Wall clock time and date at job start Fri Apr 10 2020 14:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86802 * 120.00318 * 2 1 4 4 H 1.48497 * 109.47321 * 272.37390 * 3 2 1 5 5 H 1.48500 * 109.46692 * 32.37246 * 3 2 1 6 6 H 1.48494 * 109.47188 * 152.37194 * 3 2 1 7 7 C 1.40269 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99529 * 346.78951 * 7 2 1 9 9 C 1.40882 * 120.00656 * 166.79148 * 7 2 1 10 10 C 1.40713 * 120.32535 * 325.75729 * 9 7 2 11 11 C 1.37600 * 119.87964 * 179.69416 * 10 9 7 12 12 C 1.38823 * 120.57237 * 0.60402 * 11 10 9 13 13 C 1.38223 * 120.67587 * 359.67701 * 12 11 10 14 14 C 1.39230 * 120.08859 * 0.02562 * 13 12 11 15 15 C 1.47433 * 120.27956 * 179.97438 * 14 13 12 16 16 O 1.21605 * 119.99999 * 174.52011 * 15 14 13 17 17 N 1.34783 * 120.00199 * 354.52813 * 15 14 13 18 18 C 1.46496 * 120.00031 * 180.02562 * 17 15 14 19 19 H 1.08995 * 109.64569 * 34.28906 * 18 17 15 20 20 C 1.54169 * 109.64325 * 273.86086 * 18 17 15 21 21 S 1.82909 * 105.08709 * 212.23913 * 20 18 17 22 22 O 1.42108 * 109.35354 * 115.52703 * 21 20 18 23 23 O 1.42098 * 109.35587 * 248.72675 * 21 20 18 24 24 C 1.83280 * 97.01885 * 2.12731 * 21 20 18 25 25 C 1.53879 * 109.64877 * 154.72621 * 18 17 15 26 26 H 1.08997 * 110.02760 * 47.73328 * 25 18 17 27 27 O 1.42896 * 110.02423 * 286.32076 * 25 18 17 28 28 H 0.97004 * 119.99553 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.05903 * 359.97036 * 10 9 7 30 30 H 1.08001 * 119.71067 * 180.30265 * 11 10 9 31 31 H 1.08002 * 119.66351 * 179.69314 * 12 11 10 32 32 H 1.07993 * 119.95673 * 180.02562 * 13 12 11 33 33 H 0.96997 * 119.99545 * 359.97438 * 17 15 14 34 34 H 1.08993 * 110.31968 * 331.14798 * 20 18 17 35 35 H 1.09007 * 110.31363 * 93.33644 * 20 18 17 36 36 H 1.09001 * 110.79226 * 141.48256 * 24 21 20 37 37 H 1.09008 * 110.79363 * 264.74838 * 24 21 20 38 38 H 0.96701 * 114.00308 * 179.97438 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4377 2.0754 -1.3988 5 1 1.4638 2.6376 0.7496 6 1 3.5620 1.4261 0.6492 7 6 2.0076 -1.2148 -0.0005 8 1 1.4890 -2.1378 0.2128 9 6 3.3885 -1.2309 -0.2793 10 6 3.9382 -0.3194 -1.1996 11 6 5.2892 -0.3391 -1.4603 12 6 6.1161 -1.2602 -0.8320 13 6 5.6000 -2.1700 0.0716 14 6 4.2381 -2.1707 0.3607 15 6 3.6830 -3.1396 1.3234 16 8 2.5129 -3.0723 1.6477 17 7 4.4724 -4.0999 1.8443 18 6 3.9207 -5.0630 2.8004 19 1 2.8838 -5.2805 2.5444 20 6 3.9911 -4.4774 4.2248 21 16 4.2467 -5.9197 5.3204 22 8 5.5160 -5.8134 5.9504 23 8 3.0801 -6.1280 6.1046 24 6 4.3274 -7.1906 4.0023 25 6 4.7463 -6.3610 2.7622 26 1 5.8101 -6.1282 2.8090 27 8 4.4565 -7.0903 1.5681 28 1 -0.4850 0.8401 0.0004 29 1 3.3016 0.3974 -1.6971 30 1 5.7090 0.3650 -2.1634 31 1 7.1736 -1.2659 -1.0512 32 1 6.2540 -2.8812 0.5540 33 1 5.4057 -4.1537 1.5854 34 1 4.8288 -3.7853 4.3086 35 1 3.0568 -3.9740 4.4736 36 1 5.0805 -7.9432 4.2360 37 1 3.3526 -7.6548 3.8521 38 1 4.9468 -7.9196 1.4849 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412403312.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:49 Heat of formation + Delta-G solvation = -154.760453 kcal Electronic energy + Delta-G solvation = -25518.478254 eV Core-core repulsion = 21645.022196 eV Total energy + Delta-G solvation = -3873.456058 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04695 -39.41152 -38.39279 -38.18540 -37.18002 -36.06752 -35.49041 -33.52214 -32.29265 -31.56950 -30.04211 -27.33962 -26.00605 -24.07930 -23.08682 -22.14381 -21.25911 -19.95772 -19.47931 -18.85056 -18.41855 -17.90568 -17.32339 -17.16252 -16.84364 -16.62868 -15.97497 -15.81698 -15.64618 -15.39439 -15.09914 -14.83975 -14.49445 -14.34247 -14.04811 -14.00037 -13.75067 -13.40407 -13.30099 -13.22246 -13.12140 -12.67957 -12.58545 -12.32635 -12.24725 -12.15945 -12.02036 -11.63715 -11.55810 -11.14045 -11.06864 -10.38267 -10.11963 -9.52951 -9.42818 -8.86145 -6.48495 -1.07899 0.34231 0.84128 1.22559 1.36281 1.42622 1.45259 2.08235 2.18218 2.28417 2.49062 2.69526 2.82419 3.02434 3.36647 3.46190 3.58624 3.83454 3.88119 3.93748 4.21879 4.26082 4.39033 4.45699 4.61812 4.72186 4.78525 4.81442 4.87377 5.01891 5.28707 5.46952 5.50833 5.69162 5.86777 5.96244 6.26772 6.45142 6.63898 6.78238 6.83348 6.87607 7.60026 8.18648 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.017003 B = 0.003803 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.333270 B = 7360.925344 C = 8076.172869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.037 3.963 3 Si 0.969 3.031 4 H -0.248 1.248 5 H -0.281 1.281 6 H -0.252 1.252 7 C -0.445 4.445 8 H 0.069 0.931 9 C 0.099 3.901 10 C -0.252 4.252 11 C -0.060 4.060 12 C -0.233 4.233 13 C -0.037 4.037 14 C -0.270 4.270 15 C 0.558 3.442 16 O -0.572 6.572 17 N -0.710 5.710 18 C 0.149 3.851 19 H 0.084 0.916 20 C -0.610 4.610 21 S 2.427 3.573 22 O -0.954 6.954 23 O -0.974 6.974 24 C -0.600 4.600 25 C 0.113 3.887 26 H 0.125 0.875 27 O -0.559 6.559 28 H 0.293 0.707 29 H 0.100 0.900 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.413 0.587 34 H 0.156 0.844 35 H 0.130 0.870 36 H 0.187 0.813 37 H 0.159 0.841 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.951 -11.955 4.337 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.178 4.178 3 Si 0.792 3.208 4 H -0.172 1.172 5 H -0.207 1.207 6 H -0.176 1.176 7 C -0.474 4.474 8 H 0.087 0.913 9 C 0.095 3.905 10 C -0.271 4.271 11 C -0.079 4.079 12 C -0.252 4.252 13 C -0.055 4.055 14 C -0.274 4.274 15 C 0.351 3.649 16 O -0.453 6.453 17 N -0.365 5.365 18 C 0.042 3.958 19 H 0.103 0.897 20 C -0.739 4.739 21 S 2.611 3.389 22 O -0.951 6.951 23 O -0.971 6.971 24 C -0.732 4.732 25 C 0.052 3.948 26 H 0.143 0.857 27 O -0.368 6.368 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.152 0.848 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.251 0.749 34 H 0.174 0.826 35 H 0.148 0.852 36 H 0.204 0.796 37 H 0.177 0.823 38 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 14.501 -11.391 5.479 19.236 hybrid contribution -0.258 0.439 -0.770 0.923 sum 14.243 -10.951 4.709 18.573 Atomic orbital electron populations 1.69635 1.09546 1.31442 1.36537 1.27104 0.95499 1.04505 0.90653 0.85470 0.79313 0.75984 0.80075 1.17234 1.20747 1.17567 1.19876 0.93053 0.95608 1.38827 0.91284 1.17798 0.92355 0.91001 0.89315 1.21257 0.96769 1.05117 1.03973 1.21252 0.92387 0.97123 0.97100 1.20941 1.00215 1.00302 1.03720 1.21256 0.92307 0.96841 0.95118 1.19756 0.94909 1.06102 1.06675 1.18522 0.85207 0.80914 0.80275 1.90752 1.18617 1.73560 1.62325 1.45559 1.14219 1.30732 1.46018 1.21180 1.00678 0.87735 0.86252 0.89740 1.31051 1.13314 1.19977 1.09592 1.07841 0.73817 0.79518 0.77722 1.93598 1.41949 1.85748 1.73826 1.93582 1.50893 1.84622 1.67993 1.31243 1.14669 1.14986 1.12329 1.22535 1.00009 0.88067 0.84187 0.85712 1.86604 1.70896 1.40094 1.39250 0.89598 0.88187 0.84768 0.83754 0.83779 0.74872 0.82605 0.85160 0.79556 0.82266 0.73999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.11 13.92 21.88 0.30 -48.80 16 2 C 0.04 2.08 5.45 85.37 0.47 2.54 16 3 Si 0.97 43.74 24.52 68.60 1.68 45.42 16 4 H -0.25 -10.18 6.68 99.48 0.66 -9.52 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.25 -11.47 6.85 99.48 0.68 -10.78 16 7 C -0.45 -26.48 8.23 23.41 0.19 -26.29 16 8 H 0.07 4.69 6.09 -2.91 -0.02 4.67 16 9 C 0.10 5.12 5.06 -21.11 -0.11 5.02 16 10 C -0.25 -11.42 7.09 22.72 0.16 -11.26 16 11 C -0.06 -2.18 10.01 22.26 0.22 -1.96 16 12 C -0.23 -7.41 10.03 22.41 0.22 -7.18 16 13 C -0.04 -1.23 9.52 22.50 0.21 -1.02 16 14 C -0.27 -12.01 5.92 -19.70 -0.12 -12.13 16 15 C 0.56 24.44 7.70 86.66 0.67 25.10 16 16 O -0.57 -31.15 13.24 -4.05 -0.05 -31.20 16 17 N -0.71 -21.01 5.00 -442.51 -2.21 -23.22 16 18 C 0.15 3.68 2.57 45.68 0.12 3.79 16 19 H 0.08 2.65 7.56 -2.39 -0.02 2.63 16 20 C -0.61 -13.51 6.91 72.38 0.50 -13.01 16 21 S 2.43 42.81 6.10 -56.49 -0.34 42.46 16 22 O -0.95 -20.88 18.15 -127.49 -2.31 -23.20 16 23 O -0.97 -25.98 18.15 -127.49 -2.31 -28.29 16 24 C -0.60 -5.53 6.99 72.66 0.51 -5.02 16 25 C 0.11 1.51 3.42 31.56 0.11 1.62 16 26 H 0.13 0.80 8.12 -2.39 -0.02 0.78 16 27 O -0.56 -8.52 13.37 -148.98 -1.99 -10.51 16 28 H 0.29 15.23 8.29 -92.70 -0.77 14.46 16 29 H 0.10 4.55 4.90 -2.91 -0.01 4.54 16 30 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 31 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 32 H 0.14 3.35 6.43 -2.91 -0.02 3.33 16 33 H 0.41 8.86 6.66 -92.71 -0.62 8.25 16 34 H 0.16 3.02 8.07 -2.39 -0.02 3.00 16 35 H 0.13 3.47 8.14 -2.38 -0.02 3.45 16 36 H 0.19 0.25 8.14 -2.39 -0.02 0.24 16 37 H 0.16 1.40 8.14 -2.38 -0.02 1.39 16 38 H 0.41 1.63 9.11 -74.06 -0.67 0.95 16 Total: -1.00 -89.63 327.78 -4.30 -93.93 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -0.22 Total: 23.21 kcal Atomic # 6 Polarization: -42.96 SS G_CDS: 3.16 Total: -39.80 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -1.91 Total: -72.02 kcal Atomic # 8 Polarization: -86.54 SS G_CDS: -6.67 Total: -93.21 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.68 Total: 45.42 kcal Atomic # 16 Polarization: 42.81 SS G_CDS: -0.34 Total: 42.46 kcal Total: -89.63 -4.30 -93.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412403312.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.829 kcal (2) G-P(sol) polarization free energy of solvation -89.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds