Wall clock time and date at job start Fri Apr 10 2020 14:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86797 * 120.00305 * 2 1 4 4 H 1.48501 * 109.47257 * 239.99917 * 3 2 1 5 5 H 1.48503 * 109.47196 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47322 * 119.99826 * 3 2 1 7 7 C 1.38805 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00063 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99794 * 359.97438 * 7 2 1 10 10 C 1.76204 * 99.99964 * 185.65909 * 9 7 2 11 11 C 1.39112 * 120.19308 * 6.87240 * 10 9 7 12 12 C 1.37907 * 120.05285 * 180.27258 * 11 10 9 13 13 C 1.38655 * 120.43960 * 359.72553 * 12 11 10 14 14 C 1.37809 * 120.38063 * 359.97128 * 13 12 11 15 15 C 1.39683 * 119.93628 * 0.02713 * 14 13 12 16 16 C 1.47432 * 120.21180 * 180.02562 * 15 14 13 17 17 O 1.21608 * 119.99774 * 179.97438 * 16 15 14 18 18 N 1.34772 * 119.99920 * 359.97438 * 16 15 14 19 19 C 1.46512 * 119.99658 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.46883 * 180.02562 * 19 18 16 21 21 H 1.08997 * 109.47370 * 305.00234 * 20 19 18 22 22 O 1.42905 * 109.47186 * 65.00303 * 20 19 18 23 23 C 1.53000 * 109.46937 * 184.99982 * 20 19 18 24 24 C 1.50702 * 109.46925 * 174.99832 * 23 20 19 25 25 O 1.20828 * 119.99984 * 0.02562 * 24 23 20 26 26 O 1.34227 * 119.99619 * 179.72477 * 24 23 20 27 27 H 0.97003 * 119.99914 * 0.02562 * 1 2 3 28 28 H 1.08010 * 119.97004 * 359.97341 * 11 10 9 29 29 H 1.08003 * 119.77708 * 179.74000 * 12 11 10 30 30 H 1.07992 * 119.81340 * 179.97438 * 13 12 11 31 31 H 1.07995 * 120.03275 * 180.02562 * 14 13 12 32 32 H 0.96991 * 120.00569 * 0.02562 * 18 16 15 33 33 H 1.08996 * 109.46705 * 60.00767 * 19 18 16 34 34 H 1.08993 * 109.46831 * 300.00266 * 19 18 16 35 35 H 0.96699 * 114.00038 * 59.99626 * 22 20 19 36 36 H 1.09003 * 109.46610 * 55.00440 * 23 20 19 37 37 H 1.08996 * 109.47654 * 295.00251 * 23 20 19 38 38 H 0.96703 * 116.99687 * 180.27611 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0095 -1.2021 -0.0005 8 1 3.0895 -1.2021 -0.0001 9 16 1.1285 -2.7280 -0.0005 10 6 2.4710 -3.8565 0.1698 11 6 3.7583 -3.3825 0.4010 12 6 4.8078 -4.2681 0.5282 13 6 4.5898 -5.6340 0.4330 14 6 3.3209 -6.1235 0.2105 15 6 2.2464 -5.2408 0.0792 16 6 0.8863 -5.7578 -0.1583 17 8 -0.0465 -4.9858 -0.2716 18 7 0.6768 -7.0860 -0.2500 19 6 -0.6750 -7.5997 -0.4855 20 6 -0.6362 -9.1280 -0.5462 21 1 0.0860 -9.4436 -1.2991 22 8 -0.2519 -9.6459 0.7291 23 6 -2.0228 -9.6590 -0.9153 24 6 -1.9567 -11.1538 -1.0955 25 8 -0.9082 -11.7348 -0.9437 26 8 -3.0638 -11.8404 -1.4186 27 1 -0.4850 0.8401 -0.0004 28 1 3.9367 -2.3199 0.4760 29 1 5.8061 -3.8950 0.7034 30 1 5.4191 -6.3184 0.5338 31 1 3.1575 -7.1885 0.1378 32 1 1.4206 -7.7018 -0.1593 33 1 -1.0532 -7.2078 -1.4296 34 1 -1.3298 -7.2852 0.3270 35 1 -0.8509 -9.4039 1.4486 36 1 -2.3538 -9.1954 -1.8447 37 1 -2.7274 -9.4199 -0.1189 38 1 -2.9728 -12.7979 -1.5195 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398273203.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:20 Heat of formation + Delta-G solvation = -152.005999 kcal Electronic energy + Delta-G solvation = -24105.543122 eV Core-core repulsion = 20232.206506 eV Total energy + Delta-G solvation = -3873.336616 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.67956 -39.57166 -38.07226 -37.25038 -36.31773 -34.12448 -32.75807 -32.04606 -30.61536 -30.26558 -27.45998 -25.82696 -23.67236 -22.51144 -21.83861 -21.47474 -20.02913 -18.53143 -18.20446 -17.50512 -17.00868 -16.88615 -16.10313 -15.86674 -15.62693 -15.31944 -15.09908 -14.43386 -14.37553 -14.05361 -13.72048 -13.64365 -13.40265 -12.98778 -12.81959 -12.74839 -12.40735 -11.82698 -11.82388 -11.58128 -11.37741 -11.20203 -11.18591 -10.95725 -10.91126 -10.53399 -10.32486 -9.83348 -9.66261 -9.50098 -8.84881 -8.72768 -8.32901 -8.08556 -6.53922 -6.46607 -4.17173 1.53065 1.88685 2.02937 2.56681 3.10386 3.13724 3.17769 3.39591 3.46115 3.50112 4.05192 4.06767 4.27574 4.44052 4.49285 4.61512 4.94417 5.01836 5.09326 5.13151 5.13529 5.32173 5.40056 5.60318 5.63145 5.75173 5.96952 6.12435 6.15638 6.39296 6.59757 6.67832 6.86063 7.03141 7.13856 7.31934 7.44473 7.55307 7.59525 7.87249 8.15537 8.75384 8.99623 10.56679 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.002726 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.393671 B =10269.235468 C =11552.592783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.084 3.916 3 Si 0.919 3.081 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.596 4.596 8 H 0.090 0.910 9 S 0.183 5.817 10 C -0.056 4.056 11 C -0.154 4.154 12 C -0.076 4.076 13 C -0.186 4.186 14 C -0.060 4.060 15 C -0.178 4.178 16 C 0.553 3.447 17 O -0.511 6.511 18 N -0.733 5.733 19 C 0.093 3.907 20 C 0.108 3.892 21 H 0.114 0.886 22 O -0.545 6.545 23 C -0.147 4.147 24 C 0.478 3.522 25 O -0.499 6.499 26 O -0.521 6.521 27 H 0.275 0.725 28 H 0.139 0.861 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.400 0.600 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.375 0.625 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.206 -19.024 -1.081 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.127 4.127 3 Si 0.744 3.256 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.742 4.742 8 H 0.108 0.892 9 S 0.447 5.553 10 C -0.176 4.176 11 C -0.179 4.179 12 C -0.098 4.098 13 C -0.211 4.211 14 C -0.080 4.080 15 C -0.193 4.193 16 C 0.342 3.658 17 O -0.388 6.388 18 N -0.389 5.389 19 C -0.032 4.032 20 C 0.048 3.952 21 H 0.132 0.868 22 O -0.350 6.350 23 C -0.185 4.185 24 C 0.319 3.681 25 O -0.385 6.385 26 O -0.334 6.334 27 H 0.085 0.915 28 H 0.156 0.844 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.236 0.764 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.222 0.778 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -3.816 -18.172 -1.556 18.634 hybrid contribution 1.872 0.456 0.378 1.963 sum -1.943 -17.717 -1.179 17.862 Atomic orbital electron populations 1.69965 1.06232 1.28512 1.44427 1.25092 0.94972 0.99608 0.93060 0.86204 0.79481 0.80621 0.79288 1.19475 1.20562 1.19491 1.24017 0.96971 0.94081 1.59178 0.89197 1.84713 1.02318 0.92874 1.75362 1.23083 1.00743 0.96981 0.96788 1.21434 0.91732 1.00854 1.03875 1.21093 0.98132 0.93388 0.97224 1.20649 0.96378 0.95264 1.08800 1.20929 0.92567 0.97568 0.96926 1.19077 0.92482 0.92613 1.15151 1.18318 0.89067 0.81438 0.76934 1.90784 1.43602 1.55389 1.49018 1.45678 1.09348 1.07322 1.76526 1.21882 0.85977 0.92339 1.03003 1.21986 0.94185 0.91412 0.87597 0.86815 1.86718 1.54531 1.76930 1.16787 1.22081 1.01086 0.88592 1.06770 1.23238 0.80987 0.91179 0.72663 1.90788 1.31097 1.71000 1.45639 1.84532 1.39450 1.27212 1.82186 0.91485 0.84377 0.87002 0.87028 0.87028 0.76417 0.90384 0.90939 0.77807 0.86164 0.86771 0.73081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.59 13.22 55.49 0.73 -23.85 16 2 C 0.08 2.28 5.49 -17.46 -0.10 2.19 16 3 Si 0.92 20.57 29.55 -169.99 -5.02 15.54 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.60 -16.35 9.00 30.94 0.28 -16.07 16 8 H 0.09 2.34 4.98 -52.49 -0.26 2.08 16 9 S 0.18 4.87 18.56 -107.50 -2.00 2.87 16 10 C -0.06 -1.27 6.14 -38.39 -0.24 -1.51 16 11 C -0.15 -3.21 9.22 -39.38 -0.36 -3.57 16 12 C -0.08 -1.31 10.02 -39.55 -0.40 -1.70 16 13 C -0.19 -2.90 10.02 -39.58 -0.40 -3.30 16 14 C -0.06 -0.96 9.53 -39.20 -0.37 -1.33 16 15 C -0.18 -3.50 5.89 -104.75 -0.62 -4.11 16 16 C 0.55 10.42 7.75 -12.52 -0.10 10.32 16 17 O -0.51 -11.53 13.77 5.27 0.07 -11.46 16 18 N -0.73 -9.94 5.45 -61.38 -0.33 -10.28 16 19 C 0.09 0.97 5.31 -4.04 -0.02 0.95 16 20 C 0.11 0.89 2.55 -26.73 -0.07 0.82 16 21 H 0.11 1.03 7.96 -51.93 -0.41 0.62 16 22 O -0.54 -5.12 12.52 -49.68 -0.62 -5.74 16 23 C -0.15 -0.88 5.49 -27.88 -0.15 -1.03 16 24 C 0.48 3.87 8.21 36.01 0.30 4.16 16 25 O -0.50 -5.90 16.18 -24.06 -0.39 -6.29 16 26 O -0.52 -3.15 13.42 -39.25 -0.53 -3.68 16 27 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.14 3.00 5.04 -52.48 -0.26 2.73 16 29 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 30 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.11 1.39 6.40 -52.49 -0.34 1.06 16 32 H 0.40 4.71 6.50 -40.82 -0.27 4.44 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.37 2.29 9.05 45.56 0.41 2.70 16 36 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.41 0.94 9.10 45.56 0.41 1.35 16 LS Contribution 344.65 15.07 5.19 5.19 Total: -1.00 -36.14 344.65 -7.52 -43.66 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -2.38 Total: 8.22 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -2.24 Total: -14.20 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.40 Total: -34.13 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -1.47 Total: -27.16 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 4.87 SS G_CDS: -2.00 Total: 2.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.14 -7.52 -43.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398273203.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.346 kcal (2) G-P(sol) polarization free energy of solvation -36.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds