Wall clock time and date at job start Fri Apr 10 2020 14:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86797 * 120.00305 * 2 1 4 4 H 1.48501 * 109.47257 * 239.99917 * 3 2 1 5 5 H 1.48503 * 109.47196 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47322 * 119.99826 * 3 2 1 7 7 C 1.38805 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00063 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99794 * 359.97438 * 7 2 1 10 10 C 1.76204 * 99.99964 * 185.65909 * 9 7 2 11 11 C 1.39112 * 120.19308 * 6.87240 * 10 9 7 12 12 C 1.37907 * 120.05285 * 180.27258 * 11 10 9 13 13 C 1.38655 * 120.43960 * 359.72553 * 12 11 10 14 14 C 1.37809 * 120.38063 * 359.97128 * 13 12 11 15 15 C 1.39683 * 119.93628 * 0.02713 * 14 13 12 16 16 C 1.47432 * 120.21180 * 180.02562 * 15 14 13 17 17 O 1.21608 * 119.99774 * 179.97438 * 16 15 14 18 18 N 1.34772 * 119.99920 * 359.97438 * 16 15 14 19 19 C 1.46512 * 119.99658 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.46883 * 180.02562 * 19 18 16 21 21 H 1.08997 * 109.47370 * 305.00234 * 20 19 18 22 22 O 1.42905 * 109.47186 * 65.00303 * 20 19 18 23 23 C 1.53000 * 109.46937 * 184.99982 * 20 19 18 24 24 C 1.50702 * 109.46925 * 174.99832 * 23 20 19 25 25 O 1.20828 * 119.99984 * 0.02562 * 24 23 20 26 26 O 1.34227 * 119.99619 * 179.72477 * 24 23 20 27 27 H 0.97003 * 119.99914 * 0.02562 * 1 2 3 28 28 H 1.08010 * 119.97004 * 359.97341 * 11 10 9 29 29 H 1.08003 * 119.77708 * 179.74000 * 12 11 10 30 30 H 1.07992 * 119.81340 * 179.97438 * 13 12 11 31 31 H 1.07995 * 120.03275 * 180.02562 * 14 13 12 32 32 H 0.96991 * 120.00569 * 0.02562 * 18 16 15 33 33 H 1.08996 * 109.46705 * 60.00767 * 19 18 16 34 34 H 1.08993 * 109.46831 * 300.00266 * 19 18 16 35 35 H 0.96699 * 114.00038 * 59.99626 * 22 20 19 36 36 H 1.09003 * 109.46610 * 55.00440 * 23 20 19 37 37 H 1.08996 * 109.47654 * 295.00251 * 23 20 19 38 38 H 0.96703 * 116.99687 * 180.27611 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0095 -1.2021 -0.0005 8 1 3.0895 -1.2021 -0.0001 9 16 1.1285 -2.7280 -0.0005 10 6 2.4710 -3.8565 0.1698 11 6 3.7583 -3.3825 0.4010 12 6 4.8078 -4.2681 0.5282 13 6 4.5898 -5.6340 0.4330 14 6 3.3209 -6.1235 0.2105 15 6 2.2464 -5.2408 0.0792 16 6 0.8863 -5.7578 -0.1583 17 8 -0.0465 -4.9858 -0.2716 18 7 0.6768 -7.0860 -0.2500 19 6 -0.6750 -7.5997 -0.4855 20 6 -0.6362 -9.1280 -0.5462 21 1 0.0860 -9.4436 -1.2991 22 8 -0.2519 -9.6459 0.7291 23 6 -2.0228 -9.6590 -0.9153 24 6 -1.9567 -11.1538 -1.0955 25 8 -0.9082 -11.7348 -0.9437 26 8 -3.0638 -11.8404 -1.4186 27 1 -0.4850 0.8401 -0.0004 28 1 3.9367 -2.3199 0.4760 29 1 5.8061 -3.8950 0.7034 30 1 5.4191 -6.3184 0.5338 31 1 3.1575 -7.1885 0.1378 32 1 1.4206 -7.7018 -0.1593 33 1 -1.0532 -7.2078 -1.4296 34 1 -1.3298 -7.2852 0.3270 35 1 -0.8509 -9.4039 1.4486 36 1 -2.3538 -9.1954 -1.8447 37 1 -2.7274 -9.4199 -0.1189 38 1 -2.9728 -12.7979 -1.5195 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398273203.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:19 Heat of formation + Delta-G solvation = -181.340448 kcal Electronic energy + Delta-G solvation = -24106.815159 eV Core-core repulsion = 20232.206506 eV Total energy + Delta-G solvation = -3874.608653 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.35604 -40.91766 -39.15182 -38.43359 -36.95042 -35.32195 -34.75183 -32.87291 -31.91572 -31.76798 -28.40161 -27.82171 -24.83907 -23.65008 -23.18989 -22.17359 -21.39845 -19.96221 -19.09350 -18.78094 -18.02276 -17.58378 -17.37798 -17.03635 -16.75947 -16.56228 -16.39450 -15.77066 -15.59924 -15.41631 -15.26678 -14.67234 -14.58164 -14.29006 -13.96498 -13.82348 -13.30210 -13.28380 -12.97306 -12.93874 -12.89062 -12.54766 -12.44901 -12.07005 -12.02798 -11.58029 -11.50837 -11.41423 -11.33651 -11.12084 -10.40614 -10.12727 -9.91062 -9.74661 -8.45033 -8.43874 -6.22632 0.04806 0.54677 1.27633 1.29112 1.38638 1.44446 1.65521 1.94646 2.03704 2.22012 2.43256 2.88721 3.05426 3.25925 3.45582 3.63089 3.70827 4.00026 4.02431 4.04241 4.27833 4.41925 4.56492 4.62401 4.62902 4.66925 4.77152 4.87663 5.01379 5.12256 5.37318 5.46296 5.51053 5.58211 5.68463 5.69115 6.10770 6.17168 6.62080 6.79287 6.97183 7.05487 7.36986 8.61210 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.002726 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.393671 B =10269.235468 C =11552.592783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.025 3.975 3 Si 0.992 3.008 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.604 4.604 8 H 0.093 0.907 9 S 0.069 5.931 10 C -0.073 4.073 11 C -0.176 4.176 12 C -0.070 4.070 13 C -0.159 4.159 14 C -0.055 4.055 15 C -0.183 4.183 16 C 0.547 3.453 17 O -0.554 6.554 18 N -0.711 5.711 19 C 0.090 3.910 20 C 0.122 3.878 21 H 0.107 0.893 22 O -0.562 6.562 23 C -0.144 4.144 24 C 0.484 3.516 25 O -0.542 6.542 26 O -0.518 6.518 27 H 0.276 0.724 28 H 0.120 0.880 29 H 0.149 0.851 30 H 0.163 0.837 31 H 0.157 0.843 32 H 0.412 0.588 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.388 0.612 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.094 -21.779 -0.909 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.180 4.180 3 Si 0.813 3.187 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.751 4.751 8 H 0.111 0.889 9 S 0.328 5.672 10 C -0.191 4.191 11 C -0.201 4.201 12 C -0.091 4.091 13 C -0.182 4.182 14 C -0.074 4.074 15 C -0.196 4.196 16 C 0.336 3.664 17 O -0.434 6.434 18 N -0.365 5.365 19 C -0.034 4.034 20 C 0.063 3.937 21 H 0.125 0.875 22 O -0.369 6.369 23 C -0.181 4.181 24 C 0.327 3.673 25 O -0.432 6.432 26 O -0.332 6.332 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.167 0.833 30 H 0.181 0.819 31 H 0.174 0.826 32 H 0.250 0.750 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.237 0.763 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -1.469 -21.062 -1.377 21.158 hybrid contribution 1.311 0.860 0.344 1.605 sum -0.159 -20.202 -1.034 20.229 Atomic orbital electron populations 1.70115 1.07959 1.29233 1.46612 1.26120 0.95859 1.03342 0.92724 0.85107 0.78136 0.75856 0.79636 1.18690 1.19841 1.18529 1.24224 0.97066 0.94524 1.59239 0.88888 1.84839 1.06273 0.95183 1.80925 1.23003 0.99772 0.97367 0.98921 1.21458 0.92299 1.00924 1.05410 1.21531 0.98547 0.93786 0.95201 1.21313 0.97494 0.95193 1.04203 1.21433 0.91625 0.99239 0.95138 1.19504 0.94334 0.91995 1.13757 1.18422 0.88448 0.82824 0.76720 1.90784 1.44723 1.56903 1.51040 1.45514 1.11219 1.05558 1.74253 1.22089 0.84162 0.94058 1.03051 1.21778 0.95489 0.89215 0.87258 0.87480 1.86684 1.55564 1.77048 1.17574 1.22079 1.00065 0.87427 1.08566 1.23497 0.80564 0.91788 0.71415 1.90778 1.32602 1.71964 1.47834 1.84501 1.38455 1.28706 1.81490 0.91493 0.86287 0.83327 0.81908 0.82575 0.75021 0.90404 0.90804 0.76253 0.84263 0.84500 0.71209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.05 13.22 21.65 0.29 -54.77 16 2 C 0.03 1.45 5.49 84.87 0.47 1.91 16 3 Si 0.99 43.77 29.55 68.60 2.03 45.80 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 7 C -0.60 -35.20 9.00 67.96 0.61 -34.59 16 8 H 0.09 5.12 4.98 -2.91 -0.01 5.10 16 9 S 0.07 3.96 18.56 -56.49 -1.05 2.91 16 10 C -0.07 -3.40 6.14 23.04 0.14 -3.25 16 11 C -0.18 -7.33 9.22 22.40 0.21 -7.13 16 12 C -0.07 -2.13 10.02 22.29 0.22 -1.91 16 13 C -0.16 -4.04 10.02 22.27 0.22 -3.82 16 14 C -0.05 -1.51 9.53 22.52 0.21 -1.30 16 15 C -0.18 -7.02 5.89 -19.95 -0.12 -7.14 16 16 C 0.55 20.65 7.75 86.67 0.67 21.32 16 17 O -0.55 -26.29 13.77 -4.06 -0.06 -26.35 16 18 N -0.71 -18.10 5.45 -466.36 -2.54 -20.65 16 19 C 0.09 1.77 5.31 86.38 0.46 2.23 16 20 C 0.12 1.75 2.55 30.59 0.08 1.83 16 21 H 0.11 1.72 7.96 -2.39 -0.02 1.70 16 22 O -0.56 -9.26 12.52 -135.17 -1.69 -10.95 16 23 C -0.14 -1.37 5.49 29.85 0.16 -1.20 16 24 C 0.48 6.84 8.21 71.24 0.58 7.42 16 25 O -0.54 -12.05 16.18 27.03 0.44 -11.61 16 26 O -0.52 -5.08 13.42 -51.39 -0.69 -5.77 16 27 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.12 5.36 5.04 -2.91 -0.01 5.35 16 29 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.16 2.96 6.40 -2.91 -0.02 2.94 16 32 H 0.41 8.37 6.50 -92.71 -0.60 7.77 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.39 3.87 9.05 -74.06 -0.67 3.20 16 36 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.43 1.09 9.10 -74.06 -0.67 0.41 16 Total: -1.00 -86.51 344.65 -0.14 -86.65 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -0.79 Total: 20.34 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 3.93 Total: -25.62 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -2.26 Total: -75.41 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -2.00 Total: -54.67 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.05 Total: 2.91 kcal Total: -86.51 -0.14 -86.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398273203.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.689 kcal (2) G-P(sol) polarization free energy of solvation -86.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds