Wall clock time and date at job start Fri Apr 10 2020 14:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86802 * 119.99804 * 2 1 4 4 H 1.48504 * 109.46766 * 274.68890 * 3 2 1 5 5 H 1.48496 * 109.47320 * 34.68790 * 3 2 1 6 6 H 1.48502 * 109.47144 * 154.69105 * 3 2 1 7 7 C 1.39939 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99602 * 197.70951 * 7 2 1 9 9 C 1.41437 * 120.00241 * 17.71244 * 7 2 1 10 10 C 1.40780 * 120.17437 * 204.33556 * 9 7 2 11 11 C 1.37721 * 120.03629 * 179.97438 * 10 9 7 12 12 C 1.38364 * 120.41047 * 0.02562 * 11 10 9 13 13 C 1.39873 * 120.36218 * 0.02562 * 12 11 10 14 14 C 1.47882 * 120.02897 * 180.02562 * 13 12 11 15 15 O 1.21547 * 120.00433 * 180.02562 * 14 13 12 16 16 N 1.34782 * 119.99760 * 0.02562 * 14 13 12 17 17 C 1.46507 * 119.99828 * 179.97438 * 16 14 13 18 18 H 1.09000 * 108.89119 * 36.32868 * 17 16 14 19 19 C 1.54204 * 108.92522 * 277.78862 * 17 16 14 20 20 S 1.83820 * 102.86522 * 264.30249 * 19 17 16 21 21 O 1.42098 * 109.80751 * 77.68530 * 20 19 17 22 22 O 1.42100 * 109.81308 * 212.03673 * 20 19 17 23 23 C 1.83642 * 94.17325 * 324.79849 * 20 19 17 24 24 C 1.52376 * 108.92200 * 155.00077 * 17 16 14 25 25 H 1.09002 * 108.93119 * 0.13541 * 24 17 16 26 26 O 1.42900 * 108.92407 * 241.48626 * 24 17 16 27 27 C 1.39034 * 119.95029 * 0.28282 * 13 12 11 28 28 H 0.97003 * 120.00431 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.98538 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.78739 * 180.02562 * 11 10 9 31 31 H 1.07999 * 119.81953 * 180.02562 * 12 11 10 32 32 H 0.96992 * 119.99983 * 0.02562 * 16 14 13 33 33 H 1.08996 * 110.73860 * 22.65065 * 19 17 16 34 34 H 1.09008 * 110.73265 * 145.77688 * 19 17 16 35 35 H 1.08991 * 110.75769 * 276.86599 * 23 20 19 36 36 H 1.09005 * 110.63545 * 153.61100 * 23 20 19 37 37 H 0.96706 * 114.00343 * 177.97267 * 26 24 17 38 38 H 1.07995 * 120.20749 * 179.69970 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3905 2.1036 -1.3955 5 1 1.4927 2.6221 0.7968 6 1 3.5859 1.4137 0.5985 7 6 2.0079 -1.2119 0.0005 8 1 3.0495 -1.2339 0.2851 9 6 1.3511 -2.4080 -0.3716 10 6 1.8279 -3.6499 0.0890 11 6 1.1858 -4.8127 -0.2747 12 6 0.0710 -4.7707 -1.0932 13 6 -0.4166 -3.5461 -1.5614 14 6 -1.6090 -3.5097 -2.4353 15 8 -2.0320 -2.4453 -2.8423 16 7 -2.2267 -4.6568 -2.7806 17 6 -3.4083 -4.6207 -3.6460 18 1 -3.2810 -3.8289 -4.3843 19 6 -4.6485 -4.3043 -2.7861 20 16 -5.3347 -5.9717 -2.4284 21 8 -4.5723 -6.5968 -1.4051 22 8 -6.7499 -5.8978 -2.3232 23 6 -4.8685 -6.6620 -4.0651 24 6 -3.5318 -5.9560 -4.3696 25 1 -2.7114 -6.6033 -4.0598 26 8 -3.4369 -5.7306 -5.7776 27 6 0.2238 -2.3635 -1.2088 28 1 -0.4851 0.8400 -0.0004 29 1 2.6972 -3.6908 0.7286 30 1 1.5547 -5.7633 0.0813 31 1 -0.4254 -5.6883 -1.3721 32 1 -1.8893 -5.5061 -2.4556 33 1 -4.3603 -3.7997 -1.8640 34 1 -5.3634 -3.7019 -3.3467 35 1 -5.6170 -6.4123 -4.8170 36 1 -4.7292 -7.7412 -4.0013 37 1 -3.4756 -6.5379 -6.3086 38 1 -0.1462 -1.4161 -1.5719 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564668912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:22 Heat of formation + Delta-G solvation = -124.917987 kcal Electronic energy + Delta-G solvation = -25273.390706 eV Core-core repulsion = 21401.228715 eV Total energy + Delta-G solvation = -3872.161992 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.90401 -38.27967 -37.29663 -37.01362 -36.26343 -35.05921 -33.79104 -32.13641 -30.29705 -29.51262 -29.19204 -25.83411 -25.23902 -22.77463 -21.27419 -20.84037 -19.89783 -19.17536 -18.12586 -17.85466 -17.10269 -16.45814 -16.12776 -16.03859 -15.79998 -15.17388 -14.99717 -14.70597 -14.29453 -14.07391 -13.73173 -13.41218 -13.22349 -13.07303 -12.80286 -12.55942 -12.50875 -12.34701 -12.28042 -11.79374 -11.68821 -11.44767 -11.20975 -11.12507 -10.78915 -10.63424 -10.53259 -10.45533 -10.08383 -9.73126 -9.25863 -9.16988 -9.03371 -7.69408 -7.56313 -6.83835 -4.45072 -0.28498 2.08454 2.15194 2.77650 3.04391 3.06045 3.09575 3.12592 3.20691 3.58095 3.74094 3.80000 3.89353 3.98253 4.27811 4.37393 4.52814 4.62193 4.82471 4.96754 5.16377 5.41231 5.55730 5.60648 5.75059 6.04909 6.23832 6.55141 6.67067 6.93370 6.96372 7.10086 7.16862 7.33130 7.60946 7.68496 7.84845 7.95872 8.13205 8.46017 8.73049 8.77830 8.80347 10.11046 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.003233 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.630590 B = 8659.574638 C = 8927.846126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.459 4.459 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.209 4.209 11 C -0.097 4.097 12 C -0.217 4.217 13 C -0.130 4.130 14 C 0.569 3.431 15 O -0.536 6.536 16 N -0.735 5.735 17 C 0.148 3.852 18 H 0.127 0.873 19 C -0.578 4.578 20 S 2.380 3.620 21 O -0.918 6.918 22 O -0.935 6.935 23 C -0.628 4.628 24 C 0.114 3.886 25 H 0.087 0.913 26 O -0.547 6.547 27 C -0.092 4.092 28 H 0.285 0.715 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.404 0.596 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.386 0.614 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 -11.703 -8.817 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.229 4.229 11 C -0.115 4.115 12 C -0.237 4.237 13 C -0.133 4.133 14 C 0.360 3.640 15 O -0.413 6.413 16 N -0.392 5.392 17 C 0.040 3.960 18 H 0.145 0.855 19 C -0.710 4.710 20 S 2.562 3.438 21 O -0.915 6.915 22 O -0.932 6.932 23 C -0.757 4.757 24 C 0.053 3.947 25 H 0.105 0.895 26 O -0.353 6.353 27 C -0.112 4.112 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.242 0.758 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.160 0.840 37 H 0.234 0.766 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.220 -10.546 -8.093 16.178 hybrid contribution 0.734 -0.025 -0.657 0.985 sum -8.487 -10.571 -8.750 16.135 Atomic orbital electron populations 1.69785 1.07599 1.29794 1.33603 1.25968 0.94773 1.01587 0.92250 0.86248 0.80474 0.80455 0.79293 1.19199 1.20177 1.18502 1.19617 0.98217 0.91008 1.39987 0.90002 1.17597 0.91196 0.92491 0.89130 1.21123 1.03383 0.92748 1.05679 1.20445 0.95948 0.96811 0.98277 1.20359 1.01199 0.94613 1.07544 1.19388 0.96313 0.95484 1.02115 1.18911 0.83171 0.82536 0.79340 1.90714 1.66271 1.29718 1.54597 1.46219 1.29754 1.10806 1.52388 1.20586 0.84570 0.98194 0.92612 0.85500 1.30883 1.08147 1.21171 1.10784 1.09498 0.75923 0.80311 0.78094 1.93678 1.72477 1.73509 1.51829 1.93620 1.27650 1.85822 1.86062 1.31245 1.07876 1.11612 1.24919 1.21965 0.94110 0.94369 0.84286 0.89485 1.86607 1.96360 1.36877 1.15437 1.21643 0.96454 0.96370 0.96695 0.90422 0.88544 0.88766 0.89056 0.75821 0.83318 0.83441 0.83211 0.84017 0.76576 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.45 10.96 55.55 0.61 -19.84 16 2 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 7 C -0.46 -11.89 9.05 -37.73 -0.34 -12.24 16 8 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 9 C 0.10 2.56 5.57 -106.87 -0.60 1.96 16 10 C -0.21 -4.89 9.78 -38.81 -0.38 -5.26 16 11 C -0.10 -2.02 10.01 -39.72 -0.40 -2.42 16 12 C -0.22 -4.45 9.55 -38.92 -0.37 -4.82 16 13 C -0.13 -2.97 5.87 -105.04 -0.62 -3.59 16 14 C 0.57 11.75 7.56 -12.31 -0.09 11.66 16 15 O -0.54 -12.61 16.00 5.32 0.09 -12.52 16 16 N -0.74 -11.15 4.91 -54.43 -0.27 -11.41 16 17 C 0.15 1.80 2.74 -67.62 -0.19 1.61 16 18 H 0.13 1.79 7.28 -51.93 -0.38 1.41 16 19 C -0.58 -6.29 7.03 37.79 0.27 -6.03 16 20 S 2.38 23.25 6.07 -107.50 -0.65 22.59 16 21 O -0.92 -12.08 18.17 -57.66 -1.05 -13.13 16 22 O -0.93 -11.91 18.16 -57.66 -1.05 -12.95 16 23 C -0.63 -3.71 7.03 37.79 0.27 -3.45 16 24 C 0.11 0.94 3.71 -26.42 -0.10 0.84 16 25 H 0.09 0.61 7.42 -51.93 -0.39 0.23 16 26 O -0.55 -4.49 13.06 -35.23 -0.46 -4.95 16 27 C -0.09 -2.39 8.24 -38.44 -0.32 -2.70 16 28 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 29 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 30 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.09 1.53 6.38 -52.49 -0.33 1.20 16 32 H 0.40 5.31 6.20 -40.82 -0.25 5.05 16 33 H 0.15 1.90 7.87 -51.93 -0.41 1.49 16 34 H 0.15 1.26 8.14 -51.92 -0.42 0.83 16 35 H 0.15 0.64 8.08 -51.93 -0.42 0.22 16 36 H 0.14 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.39 1.31 9.07 45.56 0.41 1.72 16 38 H 0.13 3.77 5.75 -52.49 -0.30 3.47 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -35.55 336.19 -9.01 -44.55 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -3.31 Total: 11.77 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -2.95 Total: -22.69 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.34 Total: -31.26 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -2.47 Total: -43.56 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Atomic # 16 Polarization: 23.25 SS G_CDS: -0.65 Total: 22.59 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.55 -9.01 -44.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564668912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.364 kcal (2) G-P(sol) polarization free energy of solvation -35.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds