Wall clock time and date at job start Fri Apr 10 2020 14:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86802 * 119.99804 * 2 1 4 4 H 1.48504 * 109.46766 * 274.68890 * 3 2 1 5 5 H 1.48496 * 109.47320 * 34.68790 * 3 2 1 6 6 H 1.48502 * 109.47144 * 154.69105 * 3 2 1 7 7 C 1.39939 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99602 * 197.70951 * 7 2 1 9 9 C 1.41437 * 120.00241 * 17.71244 * 7 2 1 10 10 C 1.40780 * 120.17437 * 204.33556 * 9 7 2 11 11 C 1.37721 * 120.03629 * 179.97438 * 10 9 7 12 12 C 1.38364 * 120.41047 * 0.02562 * 11 10 9 13 13 C 1.39873 * 120.36218 * 0.02562 * 12 11 10 14 14 C 1.47882 * 120.02897 * 180.02562 * 13 12 11 15 15 O 1.21547 * 120.00433 * 180.02562 * 14 13 12 16 16 N 1.34782 * 119.99760 * 0.02562 * 14 13 12 17 17 C 1.46507 * 119.99828 * 179.97438 * 16 14 13 18 18 H 1.09000 * 108.89119 * 36.32868 * 17 16 14 19 19 C 1.54204 * 108.92522 * 277.78862 * 17 16 14 20 20 S 1.83820 * 102.86522 * 264.30249 * 19 17 16 21 21 O 1.42098 * 109.80751 * 77.68530 * 20 19 17 22 22 O 1.42100 * 109.81308 * 212.03673 * 20 19 17 23 23 C 1.83642 * 94.17325 * 324.79849 * 20 19 17 24 24 C 1.52376 * 108.92200 * 155.00077 * 17 16 14 25 25 H 1.09002 * 108.93119 * 0.13541 * 24 17 16 26 26 O 1.42900 * 108.92407 * 241.48626 * 24 17 16 27 27 C 1.39034 * 119.95029 * 0.28282 * 13 12 11 28 28 H 0.97003 * 120.00431 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.98538 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.78739 * 180.02562 * 11 10 9 31 31 H 1.07999 * 119.81953 * 180.02562 * 12 11 10 32 32 H 0.96992 * 119.99983 * 0.02562 * 16 14 13 33 33 H 1.08996 * 110.73860 * 22.65065 * 19 17 16 34 34 H 1.09008 * 110.73265 * 145.77688 * 19 17 16 35 35 H 1.08991 * 110.75769 * 276.86599 * 23 20 19 36 36 H 1.09005 * 110.63545 * 153.61100 * 23 20 19 37 37 H 0.96706 * 114.00343 * 177.97267 * 26 24 17 38 38 H 1.07995 * 120.20749 * 179.69970 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3905 2.1036 -1.3955 5 1 1.4927 2.6221 0.7968 6 1 3.5859 1.4137 0.5985 7 6 2.0079 -1.2119 0.0005 8 1 3.0495 -1.2339 0.2851 9 6 1.3511 -2.4080 -0.3716 10 6 1.8279 -3.6499 0.0890 11 6 1.1858 -4.8127 -0.2747 12 6 0.0710 -4.7707 -1.0932 13 6 -0.4166 -3.5461 -1.5614 14 6 -1.6090 -3.5097 -2.4353 15 8 -2.0320 -2.4453 -2.8423 16 7 -2.2267 -4.6568 -2.7806 17 6 -3.4083 -4.6207 -3.6460 18 1 -3.2810 -3.8289 -4.3843 19 6 -4.6485 -4.3043 -2.7861 20 16 -5.3347 -5.9717 -2.4284 21 8 -4.5723 -6.5968 -1.4051 22 8 -6.7499 -5.8978 -2.3232 23 6 -4.8685 -6.6620 -4.0651 24 6 -3.5318 -5.9560 -4.3696 25 1 -2.7114 -6.6033 -4.0598 26 8 -3.4369 -5.7306 -5.7776 27 6 0.2238 -2.3635 -1.2088 28 1 -0.4851 0.8400 -0.0004 29 1 2.6972 -3.6908 0.7286 30 1 1.5547 -5.7633 0.0813 31 1 -0.4254 -5.6883 -1.3721 32 1 -1.8893 -5.5061 -2.4556 33 1 -4.3603 -3.7997 -1.8640 34 1 -5.3634 -3.7019 -3.3467 35 1 -5.6170 -6.4123 -4.8170 36 1 -4.7292 -7.7412 -4.0013 37 1 -3.4756 -6.5379 -6.3086 38 1 -0.1462 -1.4161 -1.5719 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564668912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:21 Heat of formation + Delta-G solvation = -155.695839 kcal Electronic energy + Delta-G solvation = -25274.725334 eV Core-core repulsion = 21401.228715 eV Total energy + Delta-G solvation = -3873.496619 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.27531 -39.43465 -38.60128 -38.17525 -37.15453 -36.17623 -35.59822 -33.33313 -31.77118 -31.28118 -30.19029 -27.30025 -26.56799 -24.24618 -22.85974 -22.03949 -21.41139 -20.02399 -19.60708 -18.79403 -18.29878 -17.54688 -17.22085 -17.04757 -16.93822 -16.71578 -16.41180 -16.10271 -15.65434 -15.22519 -15.00681 -14.70872 -14.55331 -14.28847 -14.10599 -13.91529 -13.60520 -13.45585 -13.28017 -13.20487 -12.96699 -12.82507 -12.53899 -12.47341 -12.18759 -12.15972 -11.91401 -11.52846 -11.48644 -11.11963 -11.09572 -10.83219 -10.38654 -9.50282 -9.39757 -8.67840 -6.39221 -1.05554 0.33795 0.99876 1.36051 1.37750 1.47102 1.50691 1.91127 2.02508 2.18412 2.47956 2.76351 2.84188 2.98272 3.26317 3.51062 3.69180 3.73054 3.91594 4.00590 4.03044 4.35292 4.42588 4.58828 4.60861 4.65931 4.80098 4.90228 5.07968 5.17793 5.27068 5.31767 5.50690 5.83982 5.91217 6.04198 6.26944 6.42030 6.61990 6.80314 6.87121 6.93377 7.19810 8.29159 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.003233 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.630590 B = 8659.574638 C = 8927.846126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.030 3.970 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.250 1.250 7 C -0.498 4.498 8 H 0.084 0.916 9 C 0.067 3.933 10 C -0.215 4.215 11 C -0.096 4.096 12 C -0.198 4.198 13 C -0.141 4.141 14 C 0.566 3.434 15 O -0.577 6.577 16 N -0.714 5.714 17 C 0.139 3.861 18 H 0.104 0.896 19 C -0.592 4.592 20 S 2.394 3.606 21 O -0.954 6.954 22 O -0.967 6.967 23 C -0.585 4.585 24 C 0.118 3.882 25 H 0.110 0.890 26 O -0.562 6.562 27 C -0.131 4.131 28 H 0.286 0.714 29 H 0.109 0.891 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.417 0.583 33 H 0.121 0.879 34 H 0.165 0.835 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.409 0.591 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.433 -15.113 -10.203 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.174 1.174 7 C -0.527 4.527 8 H 0.102 0.898 9 C 0.065 3.935 10 C -0.235 4.235 11 C -0.113 4.113 12 C -0.217 4.217 13 C -0.145 4.145 14 C 0.357 3.643 15 O -0.457 6.457 16 N -0.370 5.370 17 C 0.032 3.968 18 H 0.122 0.878 19 C -0.722 4.722 20 S 2.579 3.421 21 O -0.951 6.951 22 O -0.964 6.964 23 C -0.717 4.717 24 C 0.057 3.943 25 H 0.128 0.872 26 O -0.372 6.372 27 C -0.152 4.152 28 H 0.097 0.903 29 H 0.127 0.873 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.256 0.744 33 H 0.140 0.860 34 H 0.183 0.817 35 H 0.195 0.805 36 H 0.202 0.798 37 H 0.262 0.738 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.382 -14.008 -9.453 19.329 hybrid contribution 0.719 0.794 -0.348 1.126 sum -8.663 -13.214 -9.801 18.593 Atomic orbital electron populations 1.69887 1.09255 1.30591 1.35435 1.26843 0.95389 1.04936 0.91283 0.85180 0.79386 0.75887 0.79216 1.19146 1.19410 1.17357 1.19887 0.98563 0.92203 1.42044 0.89791 1.17942 0.91830 0.93911 0.89836 1.21429 1.03804 0.92792 1.05492 1.20938 0.95336 0.97764 0.97302 1.20899 1.00398 0.95210 1.05239 1.19745 0.96911 0.95593 1.02215 1.18698 0.83004 0.83462 0.79163 1.90688 1.67291 1.31582 1.56109 1.45971 1.29911 1.09455 1.51617 1.20887 0.83423 1.00480 0.92002 0.87793 1.30939 1.08306 1.23207 1.09707 1.08914 0.74567 0.79070 0.79513 1.93624 1.72829 1.73560 1.55096 1.93578 1.29455 1.85980 1.87419 1.31079 1.06810 1.13337 1.20496 1.21822 0.96153 0.92002 0.84367 0.87202 1.86586 1.96436 1.38983 1.15206 1.21458 0.98275 0.96430 0.98997 0.90312 0.87338 0.84279 0.84378 0.74358 0.86035 0.81732 0.80512 0.79836 0.73799 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.14 10.96 21.82 0.24 -45.90 16 2 C 0.03 1.59 5.14 85.25 0.44 2.03 16 3 Si 0.98 39.68 29.59 68.60 2.03 41.71 16 4 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 6 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 7 C -0.50 -27.09 9.05 23.47 0.21 -26.88 16 8 H 0.08 4.32 7.91 -2.91 -0.02 4.29 16 9 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 10 C -0.22 -10.00 9.78 22.77 0.22 -9.78 16 11 C -0.10 -3.74 10.01 22.18 0.22 -3.52 16 12 C -0.20 -7.65 9.55 22.70 0.22 -7.43 16 13 C -0.14 -6.59 5.87 -20.14 -0.12 -6.70 16 14 C 0.57 23.95 7.56 86.80 0.66 24.61 16 15 O -0.58 -28.76 16.00 -3.86 -0.06 -28.83 16 16 N -0.71 -20.82 4.91 -444.40 -2.18 -23.00 16 17 C 0.14 3.19 2.74 45.19 0.12 3.31 16 18 H 0.10 2.93 7.28 -2.39 -0.02 2.92 16 19 C -0.59 -12.79 7.03 72.39 0.51 -12.28 16 20 S 2.39 41.94 6.07 -56.49 -0.34 41.60 16 21 O -0.95 -23.36 18.17 -127.53 -2.32 -25.68 16 22 O -0.97 -23.32 18.16 -127.53 -2.32 -25.64 16 23 C -0.58 -3.82 7.03 72.39 0.51 -3.31 16 24 C 0.12 1.45 3.71 30.80 0.11 1.56 16 25 H 0.11 0.94 7.42 -2.39 -0.02 0.92 16 26 O -0.56 -6.87 13.06 -148.98 -1.95 -8.81 16 27 C -0.13 -7.23 8.24 23.01 0.19 -7.04 16 28 H 0.29 14.73 8.30 -92.71 -0.77 13.96 16 29 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 30 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 31 H 0.14 3.98 6.38 -2.91 -0.02 3.96 16 32 H 0.42 9.69 6.20 -92.71 -0.57 9.11 16 33 H 0.12 3.32 7.87 -2.39 -0.02 3.30 16 34 H 0.16 2.82 8.14 -2.38 -0.02 2.80 16 35 H 0.18 0.43 8.08 -2.39 -0.02 0.41 16 36 H 0.18 -0.07 8.14 -2.38 -0.02 -0.09 16 37 H 0.41 0.60 9.07 -74.05 -0.67 -0.07 16 38 H 0.10 6.13 5.75 -2.91 -0.02 6.11 16 Total: -1.00 -84.62 336.19 -3.83 -88.45 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -0.11 Total: 28.01 kcal Atomic # 6 Polarization: -45.10 SS G_CDS: 3.18 Total: -41.92 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -1.94 Total: -68.90 kcal Atomic # 8 Polarization: -82.32 SS G_CDS: -6.64 Total: -88.96 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Atomic # 16 Polarization: 41.94 SS G_CDS: -0.34 Total: 41.60 kcal Total: -84.62 -3.83 -88.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564668912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.243 kcal (2) G-P(sol) polarization free energy of solvation -84.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds