Wall clock time and date at job start Fri Apr 10 2020 14:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86800 * 119.99778 * 2 1 4 4 H 1.48498 * 109.47349 * 270.00089 * 3 2 1 5 5 H 1.48507 * 109.47031 * 30.00284 * 3 2 1 6 6 H 1.48505 * 109.47214 * 150.00062 * 3 2 1 7 7 C 1.39938 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00279 * 197.84424 * 7 2 1 9 9 C 1.41404 * 119.99844 * 17.84193 * 7 2 1 10 10 C 1.40732 * 120.24301 * 24.39903 * 9 7 2 11 11 C 1.37599 * 119.74364 * 179.97438 * 10 9 7 12 12 C 1.38650 * 120.24890 * 359.74592 * 11 10 9 13 13 C 1.38617 * 120.50325 * 0.51292 * 12 11 10 14 14 S 1.76198 * 119.87727 * 179.76214 * 13 12 11 15 15 O 1.42105 * 106.40166 * 156.18606 * 14 13 12 16 16 O 1.42096 * 106.40193 * 23.26609 * 14 13 12 17 17 N 1.65603 * 107.21859 * 269.72287 * 14 13 12 18 18 C 1.47024 * 125.64845 * 90.02657 * 17 14 13 19 19 C 1.54315 * 107.27305 * 178.90838 * 18 17 14 20 20 C 1.55158 * 102.94294 * 337.80527 * 19 18 17 21 21 H 1.09003 * 111.00722 * 277.43162 * 20 19 18 22 22 C 1.50704 * 111.00639 * 153.61414 * 20 19 18 23 23 O 1.20822 * 119.99781 * 244.58267 * 22 20 19 24 24 O 1.34223 * 119.99731 * 64.58383 * 22 20 19 25 25 C 1.47524 * 125.63838 * 269.98416 * 17 14 13 26 26 C 1.37646 * 120.24308 * 359.48655 * 13 12 11 27 27 H 0.96993 * 120.00135 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.12604 * 359.97438 * 10 9 7 29 29 H 1.07999 * 119.87481 * 179.97438 * 11 10 9 30 30 H 1.07999 * 119.75020 * 180.25136 * 12 11 10 31 31 H 1.09001 * 109.88093 * 59.48573 * 18 17 14 32 32 H 1.09001 * 109.87782 * 298.32430 * 18 17 14 33 33 H 1.09000 * 110.71985 * 219.44609 * 19 18 17 34 34 H 1.08995 * 110.72309 * 96.17186 * 19 18 17 35 35 H 0.96703 * 117.00147 * 180.02562 * 24 22 20 36 36 H 1.09000 * 110.37058 * 85.34062 * 25 17 14 37 37 H 1.09003 * 110.41021 * 322.99334 * 25 17 14 38 38 H 1.08000 * 120.11978 * 180.27510 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4396 2.6527 0.7001 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0491 -1.2344 0.2860 9 6 1.3521 -2.4069 -0.3763 10 6 0.2207 -2.3618 -1.2120 11 6 -0.4093 -3.5310 -1.5717 12 6 0.0696 -4.7506 -1.1182 13 6 1.1800 -4.8066 -0.2903 14 16 1.7708 -6.3650 0.2814 15 8 3.1443 -6.1821 0.5970 16 8 1.3096 -7.3348 -0.6491 17 7 1.0011 -6.6863 1.7120 18 6 -0.2739 -7.4040 1.8567 19 6 -0.5837 -7.4879 3.3661 20 6 0.8130 -7.3103 4.0180 21 1 1.3587 -8.2537 4.0359 22 6 0.6925 -6.7329 5.4048 23 8 1.1473 -5.6398 5.6457 24 8 0.0798 -7.4330 6.3723 25 6 1.4818 -6.3004 3.0523 26 6 1.8261 -3.6497 0.0822 27 1 -0.4850 0.8400 0.0004 28 1 -0.1516 -1.4131 -1.5697 29 1 -1.2780 -3.4988 -2.2126 30 1 -0.4287 -5.6636 -1.4088 31 1 -0.1838 -8.4073 1.4403 32 1 -1.0667 -6.8580 1.3453 33 1 -1.0067 -8.4600 3.6195 34 1 -1.2550 -6.6837 3.6673 35 1 0.0265 -7.0213 7.2456 36 1 1.1682 -5.2838 3.2897 37 1 2.5671 -6.3857 3.1060 38 1 2.6936 -3.6959 0.7237 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591350437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:24 Heat of formation + Delta-G solvation = -145.385897 kcal Electronic energy + Delta-G solvation = -25424.782480 eV Core-core repulsion = 21551.732933 eV Total energy + Delta-G solvation = -3873.049547 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.65243 -38.13888 -37.64075 -36.73472 -36.28002 -35.36014 -33.84953 -31.46313 -30.08355 -29.79437 -29.31564 -25.49110 -24.45526 -22.29051 -21.77648 -21.00510 -20.65227 -18.89683 -18.26193 -18.04810 -17.37064 -16.98673 -15.96303 -15.74173 -15.44510 -15.08568 -14.88542 -14.59816 -13.89648 -13.74011 -13.51326 -13.38019 -13.34021 -12.92894 -12.58171 -12.12158 -11.91292 -11.79743 -11.66395 -11.62695 -11.49742 -11.42000 -11.38970 -11.36224 -11.08564 -11.01344 -10.89058 -10.62882 -10.60433 -9.78160 -9.63348 -9.35783 -8.84585 -8.04610 -7.71146 -6.92940 -4.53673 0.86997 1.99272 2.17952 2.62860 2.74952 3.00550 3.04959 3.07026 3.46070 3.83472 4.09697 4.23407 4.29173 4.43422 4.70389 4.86561 5.10659 5.16600 5.21540 5.38706 5.49470 5.58014 5.73227 5.86336 5.89878 6.01908 6.13703 6.17306 6.27245 6.41309 6.65165 6.75785 6.89363 7.04208 7.21056 7.37550 7.67659 7.71836 7.80795 7.93922 8.40183 8.66736 8.71510 10.02580 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.004212 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.792327 B = 6645.858408 C = 7900.952409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.084 0.916 9 C 0.092 3.908 10 C -0.118 4.118 11 C -0.121 4.121 12 C -0.149 4.149 13 C -0.632 4.632 14 S 2.704 3.296 15 O -0.965 6.965 16 O -0.968 6.968 17 N -1.014 6.014 18 C 0.120 3.880 19 C -0.113 4.113 20 C -0.096 4.096 21 H 0.124 0.876 22 C 0.490 3.510 23 O -0.504 6.504 24 O -0.516 6.516 25 C 0.133 3.867 26 C -0.124 4.124 27 H 0.283 0.717 28 H 0.125 0.875 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.411 0.589 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.412 -11.501 8.583 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.102 0.898 9 C 0.088 3.912 10 C -0.138 4.138 11 C -0.140 4.140 12 C -0.170 4.170 13 C -0.725 4.725 14 S 2.803 3.197 15 O -0.955 6.955 16 O -0.958 6.958 17 N -0.851 5.851 18 C -0.005 4.005 19 C -0.152 4.152 20 C -0.116 4.116 21 H 0.142 0.858 22 C 0.331 3.669 23 O -0.391 6.391 24 O -0.328 6.328 25 C 0.007 3.993 26 C -0.146 4.146 27 H 0.094 0.906 28 H 0.143 0.857 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.269 0.731 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.794 -11.773 7.802 14.397 hybrid contribution -0.251 1.829 0.665 1.962 sum -3.045 -9.944 8.466 13.410 Atomic orbital electron populations 1.69778 1.07673 1.29633 1.34828 1.25935 0.94780 1.01575 0.91991 0.86234 0.80559 0.80104 0.79461 1.19134 1.20203 1.18377 1.19643 0.98425 0.90977 1.39844 0.89838 1.17686 0.91785 0.91991 0.89713 1.21646 0.97625 0.97176 0.97320 1.20806 0.99359 0.93128 1.00734 1.20064 0.97135 0.97289 1.02501 1.29776 1.09989 1.18119 1.14569 1.01290 0.72837 0.74541 0.71058 1.93526 1.30938 1.87339 1.83742 1.93508 1.82324 1.59929 1.60089 1.58755 1.34811 1.71044 1.20522 1.21698 0.85494 0.97179 0.96118 1.22632 0.94467 1.03998 0.94102 1.22175 1.00301 1.01523 0.87646 0.85799 1.23055 0.73786 0.83051 0.87013 1.90788 1.44739 1.21053 1.82488 1.84516 1.72748 1.51897 1.23635 1.21872 0.99801 0.97997 0.79599 1.20785 1.00446 0.91636 1.01714 0.90573 0.85719 0.88365 0.87625 0.90520 0.90687 0.88751 0.89875 0.73060 0.89530 0.88859 0.87029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.74 10.95 55.55 0.61 -19.13 16 2 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.24 29.59 -169.99 -5.03 13.21 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 7 C -0.46 -11.91 9.05 -37.74 -0.34 -12.26 16 8 H 0.08 2.09 7.91 -52.49 -0.42 1.68 16 9 C 0.09 2.39 5.58 -106.82 -0.60 1.80 16 10 C -0.12 -2.95 8.70 -38.87 -0.34 -3.29 16 11 C -0.12 -2.72 10.02 -39.66 -0.40 -3.12 16 12 C -0.15 -3.24 9.53 -39.29 -0.37 -3.61 16 13 C -0.63 -13.94 5.97 -39.66 -0.24 -14.18 16 14 S 2.70 51.19 5.93 -107.50 -0.64 50.56 16 15 O -0.96 -20.26 16.59 -57.17 -0.95 -21.20 16 16 O -0.97 -19.38 16.84 -57.17 -0.96 -20.34 16 17 N -1.01 -15.20 3.70 -111.35 -0.41 -15.61 16 18 C 0.12 1.40 6.99 -3.07 -0.02 1.38 16 19 C -0.11 -1.01 6.41 -24.90 -0.16 -1.17 16 20 C -0.10 -0.97 3.54 -89.62 -0.32 -1.28 16 21 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 22 C 0.49 5.24 7.64 36.01 0.28 5.51 16 23 O -0.50 -7.30 16.51 -18.75 -0.31 -7.61 16 24 O -0.52 -3.90 13.42 -39.24 -0.53 -4.43 16 25 C 0.13 1.83 6.20 -2.47 -0.02 1.81 16 26 C -0.12 -3.02 9.26 -38.87 -0.36 -3.38 16 27 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 28 H 0.13 3.17 6.15 -52.49 -0.32 2.84 16 29 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 30 H 0.11 2.05 7.59 -52.49 -0.40 1.66 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.75 8.03 -51.93 -0.42 0.34 16 35 H 0.41 1.51 9.10 45.56 0.41 1.92 16 36 H 0.09 1.32 7.46 -51.93 -0.39 0.93 16 37 H 0.09 1.27 7.78 -51.93 -0.40 0.87 16 38 H 0.11 2.61 7.60 -52.49 -0.40 2.21 16 LS Contribution 339.46 15.07 5.12 5.12 Total: -1.00 -32.95 339.46 -9.65 -42.60 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -3.58 Total: 6.90 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: -2.97 Total: -30.05 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.20 Total: -34.74 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -2.75 Total: -53.59 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 16 Polarization: 51.19 SS G_CDS: -0.64 Total: 50.56 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.95 -9.65 -42.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591350437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.787 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds