Wall clock time and date at job start Fri Apr 10 2020 14:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48497 * 109.47010 * 239.99544 * 3 2 1 5 5 H 1.48497 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47071 * 119.99862 * 3 2 1 7 7 C 1.39946 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00020 * 161.48079 * 7 2 1 9 9 C 1.41399 * 119.99963 * 341.48270 * 7 2 1 10 10 C 1.40734 * 120.24633 * 335.89285 * 9 7 2 11 11 C 1.37598 * 119.74725 * 179.76823 * 10 9 7 12 12 C 1.38657 * 120.24304 * 0.50842 * 11 10 9 13 13 C 1.38612 * 120.50545 * 359.74168 * 12 11 10 14 14 S 1.76200 * 119.87539 * 180.02562 * 13 12 11 15 15 O 1.42103 * 106.40141 * 23.51994 * 14 13 12 16 16 O 1.42099 * 106.40123 * 156.43827 * 14 13 12 17 17 N 1.65599 * 107.22102 * 269.97916 * 14 13 12 18 18 C 1.46499 * 119.99646 * 64.99836 * 17 14 13 19 19 H 1.08993 * 109.73923 * 335.66049 * 18 17 14 20 20 C 1.53361 * 109.73818 * 214.99785 * 18 17 14 21 21 O 1.42895 * 109.28091 * 188.09504 * 20 18 17 22 22 C 1.42894 * 114.49503 * 64.93249 * 21 20 18 23 23 C 1.53355 * 109.27848 * 295.06979 * 22 21 20 24 24 C 1.51516 * 108.09971 * 52.25937 * 23 22 21 25 25 O 1.20759 * 121.21744 * 131.59827 * 24 23 22 26 26 C 1.37634 * 120.24795 * 359.97438 * 13 12 11 27 27 H 0.96994 * 119.99932 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.12740 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.87525 * 180.25309 * 11 10 9 30 30 H 1.08004 * 119.74679 * 179.75989 * 12 11 10 31 31 H 0.96994 * 120.00049 * 245.00635 * 17 14 13 32 32 H 1.08997 * 109.50832 * 308.03911 * 20 18 17 33 33 H 1.09007 * 109.50370 * 68.15859 * 20 18 17 34 34 H 1.09004 * 109.50385 * 55.01180 * 22 21 20 35 35 H 1.09002 * 109.49953 * 175.08706 * 22 21 20 36 36 H 1.09006 * 109.73866 * 171.90589 * 23 22 21 37 37 H 1.09001 * 109.73955 * 292.55581 * 23 22 21 38 38 H 1.08006 * 120.13174 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0461 -1.2363 -0.2965 9 6 1.3560 -2.4046 0.3900 10 6 0.2295 -2.3542 1.2320 11 6 -0.4000 -3.5209 1.6007 12 6 0.0779 -4.7435 1.1544 13 6 1.1898 -4.8055 0.3289 14 16 1.7826 -6.3681 -0.2291 15 8 0.6805 -7.2627 -0.1620 16 8 2.5090 -6.1181 -1.4245 17 7 2.8855 -6.9006 0.8856 18 6 2.4539 -7.2182 2.2490 19 1 1.5426 -6.6685 2.4841 20 6 3.5583 -6.8393 3.2434 21 8 3.2099 -7.3225 4.5422 22 6 3.1518 -8.7463 4.6488 23 6 2.0156 -9.2743 3.7645 24 6 2.2006 -8.7070 2.3718 25 8 2.1479 -9.4154 1.3953 26 6 1.8318 -3.6510 -0.0572 27 1 -0.4850 0.8400 0.0004 28 1 -0.1420 -1.4032 1.5841 29 1 -1.2671 -3.4843 2.2435 30 1 -0.4201 -5.6546 1.4519 31 1 3.8172 -7.0020 0.6357 32 1 4.5007 -7.2879 2.9290 33 1 3.6635 -5.7548 3.2747 34 1 4.0985 -9.1748 4.3196 35 1 2.9668 -9.0263 5.6859 36 1 2.0543 -10.3630 3.7265 37 1 1.0553 -8.9540 4.1687 38 1 2.6977 -3.7014 -0.7008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000625492794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:36 Heat of formation + Delta-G solvation = -135.104966 kcal Electronic energy + Delta-G solvation = -25683.898851 eV Core-core repulsion = 21811.295118 eV Total energy + Delta-G solvation = -3872.603732 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.40079 -37.98225 -37.69687 -36.67544 -35.31321 -35.07457 -33.89510 -31.85345 -30.13617 -29.85150 -29.29340 -25.54640 -24.14346 -23.95453 -21.96678 -21.05390 -19.84823 -19.27906 -18.08363 -17.38930 -16.89434 -16.55596 -16.10072 -15.98316 -15.66680 -15.19399 -15.06288 -14.82595 -14.62581 -14.21922 -13.72177 -13.49916 -13.36272 -12.81656 -12.62454 -12.48439 -12.00858 -11.94255 -11.74422 -11.57716 -11.54613 -11.41664 -11.40393 -11.23794 -11.09162 -10.89464 -10.67044 -10.62465 -10.05213 -9.82055 -9.60712 -9.37902 -9.06660 -8.10032 -7.76418 -6.97250 -4.58056 0.91026 1.79396 2.13007 2.59358 2.97290 2.98937 3.04705 3.22357 3.54264 3.78724 3.80373 4.17884 4.32125 4.41668 4.52188 4.65465 4.75837 4.81527 4.95255 5.20898 5.29711 5.34002 5.37971 5.47575 5.65608 5.71722 5.99734 6.11004 6.60814 6.70918 6.73382 6.77507 6.95933 7.02514 7.16391 7.32372 7.34302 7.67077 7.75166 7.89234 8.34893 8.61968 8.66524 9.98328 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.003778 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.039367 B = 7409.412007 C = 7960.356737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.083 0.917 9 C 0.093 3.907 10 C -0.118 4.118 11 C -0.117 4.117 12 C -0.154 4.154 13 C -0.632 4.632 14 S 2.686 3.314 15 O -0.964 6.964 16 O -0.967 6.967 17 N -1.103 6.103 18 C 0.078 3.922 19 H 0.132 0.868 20 C 0.065 3.935 21 O -0.369 6.369 22 C 0.064 3.936 23 C -0.204 4.204 24 C 0.337 3.663 25 O -0.423 6.423 26 C -0.126 4.126 27 H 0.285 0.715 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.417 0.583 32 H 0.064 0.936 33 H 0.120 0.880 34 H 0.058 0.942 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.795 -10.332 10.379 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.489 4.489 8 H 0.101 0.899 9 C 0.089 3.911 10 C -0.138 4.138 11 C -0.137 4.137 12 C -0.176 4.176 13 C -0.724 4.724 14 S 2.782 3.218 15 O -0.954 6.954 16 O -0.957 6.957 17 N -0.860 5.860 18 C -0.032 4.032 19 H 0.149 0.851 20 C -0.014 4.014 21 O -0.286 6.286 22 C -0.013 4.013 23 C -0.243 4.243 24 C 0.208 3.792 25 O -0.292 6.292 26 C -0.147 4.147 27 H 0.096 0.904 28 H 0.143 0.857 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.250 0.750 32 H 0.082 0.918 33 H 0.138 0.862 34 H 0.076 0.924 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.130 0.870 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.104 -10.898 9.255 15.181 hybrid contribution 0.487 1.241 0.070 1.335 sum 5.591 -9.657 9.325 14.542 Atomic orbital electron populations 1.69777 1.07717 1.29888 1.34158 1.25954 0.94774 1.01629 0.91979 0.86281 0.80137 0.79724 0.80187 1.18776 1.20202 1.18645 1.19597 0.98670 0.91108 1.39511 0.89881 1.17679 0.91798 0.91956 0.89636 1.21646 0.97597 0.97200 0.97363 1.20803 0.99199 0.93071 1.00616 1.20076 0.97469 0.97429 1.02589 1.29737 1.09281 1.17861 1.15511 1.01898 0.72894 0.74452 0.72567 1.93541 1.52239 1.63563 1.86019 1.93545 1.72807 1.86481 1.42882 1.55512 1.24527 1.83320 1.22613 1.22066 1.01877 0.95362 0.83914 0.85103 1.22958 0.94784 1.02145 0.81505 1.88002 1.90364 1.20808 1.29388 1.22682 0.96567 0.81295 1.00801 1.23098 1.02817 1.03306 0.95090 1.25387 0.72091 0.91198 0.90562 1.90429 1.34920 1.62394 1.41491 1.20741 1.01158 0.91636 1.01182 0.90393 0.85726 0.88290 0.87726 0.74963 0.91782 0.86175 0.92384 0.87347 0.88116 0.87010 0.86993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.37 10.97 55.55 0.61 -18.76 16 2 C 0.08 1.79 5.13 -17.34 -0.09 1.70 16 3 Si 0.91 17.63 29.60 -169.99 -5.03 12.60 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.46 -11.51 9.05 -37.74 -0.34 -11.85 16 8 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 9 C 0.09 2.33 5.58 -106.82 -0.60 1.74 16 10 C -0.12 -2.85 8.70 -38.87 -0.34 -3.19 16 11 C -0.12 -2.55 10.02 -39.66 -0.40 -2.94 16 12 C -0.15 -3.24 8.92 -39.29 -0.35 -3.59 16 13 C -0.63 -13.46 5.82 -39.66 -0.23 -13.69 16 14 S 2.69 51.36 5.65 -107.50 -0.61 50.75 16 15 O -0.96 -20.57 17.00 -57.17 -0.97 -21.54 16 16 O -0.97 -20.82 17.27 -57.17 -0.99 -21.81 16 17 N -1.10 -15.72 5.10 -5.38 -0.03 -15.75 16 18 C 0.08 0.97 3.14 -68.49 -0.22 0.76 16 19 H 0.13 1.68 7.26 -51.93 -0.38 1.30 16 20 C 0.06 0.63 6.40 37.34 0.24 0.87 16 21 O -0.37 -3.56 10.68 -35.23 -0.38 -3.94 16 22 C 0.06 0.45 6.85 37.34 0.26 0.71 16 23 C -0.20 -1.73 6.40 -27.30 -0.17 -1.90 16 24 C 0.34 4.30 6.74 -28.23 -0.19 4.11 16 25 O -0.42 -6.99 17.35 6.00 0.10 -6.88 16 26 C -0.13 -2.94 9.26 -38.87 -0.36 -3.30 16 27 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 28 H 0.13 3.06 6.16 -52.48 -0.32 2.74 16 29 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 30 H 0.10 1.97 7.60 -52.48 -0.40 1.58 16 31 H 0.42 4.81 8.85 -34.47 -0.30 4.50 16 32 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 33 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 35 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.11 2.51 7.60 -52.48 -0.40 2.12 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -32.81 337.52 -9.30 -42.11 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.31 Total: 8.72 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: -2.79 Total: -30.59 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.58 Total: -34.50 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -2.23 Total: -54.17 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Atomic # 16 Polarization: 51.36 SS G_CDS: -0.61 Total: 50.75 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.81 -9.30 -42.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000625492794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.992 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds