Wall clock time and date at job start Fri Apr 10 2020 14:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86793 * 120.00244 * 2 1 4 4 H 1.48503 * 109.47344 * 275.40859 * 3 2 1 5 5 H 1.48503 * 109.46947 * 35.40890 * 3 2 1 6 6 H 1.48503 * 109.47306 * 155.40917 * 3 2 1 7 7 C 1.39943 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00134 * 341.73392 * 7 2 1 9 9 C 1.41396 * 120.00268 * 161.72740 * 7 2 1 10 10 C 1.40722 * 120.24436 * 150.23952 * 9 7 2 11 11 C 1.37617 * 119.74348 * 179.97438 * 10 9 7 12 12 C 1.38633 * 120.25048 * 0.02803 * 11 10 9 13 13 S 1.76195 * 119.75016 * 179.97438 * 12 11 10 14 14 O 1.42097 * 106.40167 * 23.51777 * 13 12 11 15 15 O 1.42108 * 106.40347 * 156.43365 * 13 12 11 16 16 N 1.65594 * 107.21852 * 269.97434 * 13 12 11 17 17 C 1.46507 * 120.00004 * 65.00138 * 16 13 12 18 18 H 1.09004 * 112.84420 * 346.19543 * 17 16 13 19 19 C 1.53777 * 113.61420 * 117.50096 * 17 16 13 20 20 C 1.53782 * 87.08143 * 139.98117 * 19 17 16 21 21 H 1.09000 * 113.68819 * 89.12368 * 20 19 17 22 22 C 1.50692 * 113.61594 * 220.01959 * 20 19 17 23 23 O 1.20823 * 119.99954 * 97.49821 * 22 20 19 24 24 O 1.34233 * 119.99743 * 277.49394 * 22 20 19 25 25 C 1.53781 * 113.61412 * 215.00036 * 17 16 13 26 26 C 1.38641 * 120.50164 * 359.95112 * 12 11 10 27 27 C 1.37620 * 120.24522 * 0.04783 * 26 12 11 28 28 H 0.97000 * 119.99656 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.12810 * 359.71102 * 10 9 7 30 30 H 1.08002 * 119.87343 * 180.02562 * 11 10 9 31 31 H 0.97000 * 120.00429 * 244.99550 * 16 13 12 32 32 H 1.08996 * 113.61571 * 254.53002 * 19 17 16 33 33 H 1.08997 * 113.61646 * 25.43220 * 19 17 16 34 34 H 0.96705 * 116.99834 * 179.97438 * 24 22 20 35 35 H 1.08996 * 113.61123 * 334.56725 * 25 17 16 36 36 H 1.09000 * 113.61514 * 105.46777 * 25 17 16 37 37 H 1.07994 * 119.87996 * 180.02562 * 26 12 11 38 38 H 1.07999 * 120.12538 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3756 2.1124 -1.3938 5 1 1.5016 2.6169 0.8112 6 1 3.5923 1.4098 0.5826 7 6 2.0080 -1.2119 0.0005 8 1 1.5088 -2.1236 0.2941 9 6 3.3684 -1.2431 -0.3834 10 6 4.2373 -2.2058 0.1631 11 6 5.5594 -2.2270 -0.2183 12 6 6.0363 -1.3044 -1.1366 13 16 7.7316 -1.3432 -1.6150 14 8 8.1875 -2.6666 -1.3702 15 8 7.8031 -0.7199 -2.8901 16 7 8.5589 -0.3624 -0.5681 17 6 8.6446 -0.7134 0.8517 18 1 7.9388 -1.4931 1.1382 19 6 10.0809 -0.9714 1.3368 20 6 9.6964 -0.2238 2.6245 21 1 9.2792 -0.8691 3.3975 22 6 10.7820 0.6837 3.1428 23 8 10.7554 1.8644 2.8878 24 8 11.7787 0.1802 3.8879 25 6 8.6306 0.5053 1.7894 26 6 5.1893 -0.3518 -1.6817 27 6 3.8635 -0.3119 -1.3149 28 1 -0.4849 0.8401 -0.0004 29 1 3.8689 -2.9224 0.8821 30 1 6.2280 -2.9652 0.1995 31 1 8.9869 0.4444 -0.8949 32 1 10.3056 -2.0261 1.4948 33 1 10.8401 -0.4599 0.7452 34 1 12.4523 0.8012 4.1973 35 1 8.9933 1.4204 1.3215 36 1 7.6843 0.6426 2.3128 37 1 5.5714 0.3619 -2.3966 38 1 3.2053 0.4308 -1.7411 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693435683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:34 Heat of formation + Delta-G solvation = -137.087006 kcal Electronic energy + Delta-G solvation = -25113.057008 eV Core-core repulsion = 21240.367328 eV Total energy + Delta-G solvation = -3872.689680 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90044 -38.67511 -37.89019 -36.62201 -36.30223 -35.28224 -34.04116 -32.99757 -30.90796 -29.94845 -26.66310 -25.95355 -25.77354 -22.16649 -21.88041 -21.21061 -19.98340 -19.09055 -18.40498 -17.79739 -17.51302 -17.14914 -16.80002 -16.07412 -15.60090 -15.33516 -15.06983 -14.60669 -14.15394 -13.82815 -13.42832 -13.35149 -12.96834 -12.93093 -12.72347 -12.57513 -12.42019 -12.19002 -11.82107 -11.58244 -11.51635 -11.40392 -11.30030 -11.12043 -11.08299 -11.05428 -10.81111 -10.59201 -10.53588 -9.96402 -9.84901 -9.47060 -9.22132 -8.17893 -7.99955 -7.36956 -4.95974 1.06532 1.92772 1.97794 2.52778 2.77253 2.89172 3.00792 3.08265 3.54886 3.69947 4.06217 4.11572 4.19164 4.35755 4.61017 4.63027 4.99414 5.07407 5.10860 5.14268 5.47834 5.51692 5.63181 5.71875 5.79145 5.81458 5.84968 6.19786 6.28108 6.31168 6.48413 6.52964 6.85868 7.07547 7.12026 7.19648 7.25727 7.55284 7.63437 7.79253 7.97128 8.29873 8.39330 9.61852 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.003950 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.816744 B = 7086.998991 C = 8216.025633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.080 3.920 3 Si 0.917 3.083 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.240 1.240 7 C -0.415 4.415 8 H 0.099 0.901 9 C 0.117 3.883 10 C -0.221 4.221 11 C 0.001 3.999 12 C -0.793 4.793 13 S 2.692 3.308 14 O -0.979 6.979 15 O -0.982 6.982 16 N -1.112 6.112 17 C 0.140 3.860 18 H 0.122 0.878 19 C -0.133 4.133 20 C -0.113 4.113 21 H 0.131 0.869 22 C 0.491 3.509 23 O -0.515 6.515 24 O -0.516 6.516 25 C -0.128 4.128 26 C 0.017 3.983 27 C -0.253 4.253 28 H 0.294 0.706 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.413 0.587 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.408 0.592 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.365 1.957 6.676 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.162 1.162 7 C -0.442 4.442 8 H 0.117 0.883 9 C 0.112 3.888 10 C -0.241 4.241 11 C -0.019 4.019 12 C -0.888 4.888 13 S 2.790 3.210 14 O -0.969 6.969 15 O -0.973 6.973 16 N -0.866 5.866 17 C 0.032 3.968 18 H 0.140 0.860 19 C -0.173 4.173 20 C -0.133 4.133 21 H 0.149 0.851 22 C 0.333 3.667 23 O -0.402 6.402 24 O -0.327 6.327 25 C -0.167 4.167 26 C -0.003 4.003 27 C -0.273 4.273 28 H 0.104 0.896 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.246 0.754 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.266 0.734 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 15.078 1.443 5.823 16.227 hybrid contribution 0.073 1.757 0.570 1.849 sum 15.151 3.201 6.394 16.753 Atomic orbital electron populations 1.69677 1.08382 1.31376 1.30517 1.26400 0.94888 1.02568 0.90485 0.86202 0.81393 0.78716 0.79491 1.18969 1.21261 1.16246 1.19870 0.93070 0.96426 1.34786 0.88281 1.17909 0.92607 0.90198 0.88046 1.21057 0.93184 1.04482 1.05375 1.20245 0.95947 0.93495 0.92211 1.29237 1.21522 1.14520 1.23525 1.01338 0.74329 0.72866 0.72455 1.93503 1.81354 1.36433 1.85654 1.93511 1.87853 1.77285 1.38623 1.55759 1.70473 1.41402 1.18922 1.22033 0.96837 0.97886 0.80084 0.85982 1.23483 0.98790 1.01725 0.93283 1.22388 0.93951 0.98457 0.98503 0.85119 1.23335 0.81426 0.87687 0.74222 1.90723 1.75910 1.18059 1.55554 1.84569 1.36672 1.46826 1.64671 1.23446 0.98325 0.98733 0.96193 1.20206 0.93336 0.93258 0.93542 1.21050 0.95807 1.05500 1.04925 0.89561 0.87461 0.87243 0.75398 0.89043 0.88972 0.73384 0.87907 0.89235 0.87320 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.76 13.93 55.55 0.77 -17.99 16 2 C 0.08 1.90 5.40 -17.34 -0.09 1.81 16 3 Si 0.92 18.95 24.52 -169.99 -4.17 14.78 16 4 H -0.26 -5.34 6.71 56.52 0.38 -4.96 16 5 H -0.29 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.24 -5.03 6.86 56.52 0.39 -4.64 16 7 C -0.42 -10.20 9.57 -37.74 -0.36 -10.56 16 8 H 0.10 2.52 8.06 -52.48 -0.42 2.09 16 9 C 0.12 2.73 5.10 -106.82 -0.55 2.19 16 10 C -0.22 -4.71 9.80 -38.87 -0.38 -5.09 16 11 C 0.00 0.02 9.21 -39.66 -0.37 -0.34 16 12 C -0.79 -15.57 5.97 -39.29 -0.23 -15.80 16 13 S 2.69 46.18 5.67 -107.50 -0.61 45.57 16 14 O -0.98 -18.49 17.02 -57.17 -0.97 -19.46 16 15 O -0.98 -19.29 17.26 -57.17 -0.99 -20.28 16 16 N -1.11 -14.32 5.79 -4.19 -0.02 -14.34 16 17 C 0.14 1.57 4.35 -67.12 -0.29 1.28 16 18 H 0.12 1.35 7.76 -51.93 -0.40 0.95 16 19 C -0.13 -1.24 7.43 -25.92 -0.19 -1.43 16 20 C -0.11 -1.00 4.26 -90.96 -0.39 -1.38 16 21 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 22 C 0.49 4.83 7.85 36.00 0.28 5.11 16 23 O -0.51 -6.66 16.66 -18.75 -0.31 -6.97 16 24 O -0.52 -3.83 13.42 -39.27 -0.53 -4.36 16 25 C -0.13 -1.32 7.19 -25.92 -0.19 -1.50 16 26 C 0.02 0.35 9.49 -39.66 -0.38 -0.03 16 27 C -0.25 -5.75 7.18 -38.87 -0.28 -6.03 16 28 H 0.29 6.33 8.30 -40.82 -0.34 5.99 16 29 H 0.11 2.11 8.06 -52.49 -0.42 1.68 16 30 H 0.11 1.86 7.60 -52.49 -0.40 1.46 16 31 H 0.41 4.48 8.94 -34.47 -0.31 4.17 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 34 H 0.41 1.37 9.10 45.56 0.41 1.78 16 35 H 0.10 1.12 7.43 -51.93 -0.39 0.74 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.11 2.08 7.60 -52.49 -0.40 1.68 16 38 H 0.11 2.35 4.74 -52.49 -0.25 2.10 16 LS Contribution 337.85 15.07 5.09 5.09 Total: -1.00 -31.66 337.85 -8.58 -40.24 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -3.43 Total: 9.51 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: -3.41 Total: -31.78 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.75 Total: -32.33 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -2.80 Total: -51.07 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.17 Total: 14.78 kcal Atomic # 16 Polarization: 46.18 SS G_CDS: -0.61 Total: 45.57 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.66 -8.58 -40.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693435683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.849 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds