Wall clock time and date at job start Fri Apr 10 2020 14:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86801 * 119.99892 * 2 1 4 4 H 1.48500 * 109.46702 * 269.99350 * 3 2 1 5 5 H 1.48497 * 109.47181 * 29.99605 * 3 2 1 6 6 H 1.48499 * 109.46900 * 149.99726 * 3 2 1 7 7 C 1.38793 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99970 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00132 * 180.02562 * 7 2 1 10 10 C 1.81003 * 99.99760 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46932 * 180.02562 * 10 9 7 12 12 O 1.20826 * 119.99941 * 359.97438 * 11 10 9 13 13 O 1.34231 * 119.99932 * 180.02562 * 11 10 9 14 14 C 1.45207 * 116.99746 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.46886 * 179.97438 * 14 13 11 16 16 O 1.42898 * 109.47141 * 65.00225 * 15 14 13 17 17 C 1.35656 * 117.00084 * 180.02562 * 16 15 14 18 18 C 1.38714 * 120.14894 * 359.97411 * 17 16 15 19 19 C 1.38051 * 120.08468 * 180.02562 * 18 17 16 20 20 C 1.38555 * 120.38906 * 0.02562 * 19 18 17 21 21 C 1.37786 * 120.30047 * 359.97438 * 20 19 18 22 22 C 1.39705 * 119.90585 * 0.02562 * 21 20 19 23 23 C 1.47544 * 120.19020 * 179.97438 * 22 21 20 24 24 N 1.34783 * 119.99517 * 359.97438 * 23 22 21 25 25 O 1.21581 * 119.99935 * 179.97438 * 23 22 21 26 26 H 0.97003 * 119.99861 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47346 * 60.00143 * 10 9 7 28 28 H 1.08996 * 109.47437 * 299.99621 * 10 9 7 29 29 H 1.08996 * 109.46472 * 59.99892 * 14 13 11 30 30 H 1.09000 * 109.46977 * 300.00418 * 14 13 11 31 31 H 1.09003 * 109.47097 * 305.00346 * 15 14 13 32 32 H 1.09001 * 109.47366 * 185.00145 * 15 14 13 33 33 H 1.07996 * 119.95854 * 0.02699 * 18 17 16 34 34 H 1.07997 * 119.80544 * 180.27727 * 19 18 17 35 35 H 1.07998 * 119.84739 * 179.97438 * 20 19 18 36 36 H 1.07996 * 120.04310 * 180.02562 * 21 20 19 37 37 H 0.96998 * 120.00167 * 0.02562 * 24 23 22 38 38 H 0.97000 * 119.99219 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5731 -3.2326 0.0021 12 8 6.3411 -2.2999 0.0025 13 8 6.0437 -4.4897 0.0016 14 6 7.4865 -4.6533 0.0022 15 6 7.8307 -6.1440 0.0021 16 8 7.3836 -6.7361 -1.2192 17 6 7.6125 -8.0634 -1.3802 18 6 8.2548 -8.7854 -0.3850 19 6 8.4875 -10.1360 -0.5504 20 6 8.0832 -10.7802 -1.7086 21 6 7.4439 -10.0786 -2.7073 22 6 7.2021 -8.7114 -2.5530 23 6 6.5184 -7.9539 -3.6187 24 7 6.1258 -8.5808 -4.7454 25 8 6.3093 -6.7642 -3.4805 26 1 -0.4850 0.8401 -0.0004 27 1 3.6440 -3.4314 -0.8892 28 1 3.6433 -3.4318 0.8906 29 1 7.9049 -4.1842 0.8926 30 1 7.9059 -4.1831 -0.8873 31 1 7.3376 -6.6308 0.8436 32 1 8.9099 -6.2679 0.0922 33 1 8.5732 -8.2902 0.5204 34 1 8.9840 -10.6946 0.2292 35 1 8.2701 -11.8371 -1.8290 36 1 7.1302 -10.5850 -3.6081 37 1 6.2924 -9.5301 -4.8554 38 1 5.6767 -8.0827 -5.4461 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733070896.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:25 Heat of formation + Delta-G solvation = -131.667591 kcal Electronic energy + Delta-G solvation = -23919.534093 eV Core-core repulsion = 20047.079416 eV Total energy + Delta-G solvation = -3872.454676 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.88560 -40.04054 -38.93861 -37.72059 -36.14415 -33.93360 -32.44232 -31.83945 -31.17314 -30.07586 -29.15014 -25.63923 -24.58618 -23.97265 -22.12379 -21.06202 -20.83737 -19.02912 -17.93600 -17.70951 -17.29665 -17.06721 -16.39155 -16.17082 -15.90847 -15.43396 -15.29755 -15.04235 -14.92416 -14.69210 -13.99201 -13.82838 -13.76333 -13.48927 -12.96426 -12.81110 -12.72477 -12.24906 -12.12020 -11.94100 -11.59230 -11.30637 -11.25818 -11.00870 -10.67715 -10.51950 -10.10560 -10.05683 -9.84181 -9.82902 -9.50663 -9.00627 -8.61518 -8.55524 -6.96068 -6.28658 -4.02128 0.47440 0.97446 2.46977 2.62258 2.67148 2.79045 3.14734 3.28216 3.33696 3.49516 3.51667 3.57147 4.26261 4.29990 4.32640 4.52735 4.61413 4.63300 4.73242 4.79907 4.89488 4.91723 4.99205 5.10056 5.15954 5.33323 5.37426 5.54836 5.69662 5.75544 5.80829 5.97172 6.05964 6.23968 6.60587 6.62607 6.99787 7.17223 7.94409 8.11680 8.15247 8.43547 9.16545 10.80454 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.002425 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.161581 B =11541.626524 C =12276.210931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.520 4.520 8 H 0.091 0.909 9 S -0.141 6.141 10 C -0.099 4.099 11 C 0.481 3.519 12 O -0.493 6.493 13 O -0.349 6.349 14 C 0.070 3.930 15 C 0.054 3.946 16 O -0.269 6.269 17 C 0.192 3.808 18 C -0.222 4.222 19 C -0.051 4.051 20 C -0.171 4.171 21 C -0.048 4.048 22 C -0.177 4.177 23 C 0.558 3.442 24 N -0.858 5.858 25 O -0.509 6.509 26 H 0.271 0.729 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.396 0.604 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.356 -25.664 -3.477 32.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.160 1.160 7 C -0.668 4.668 8 H 0.109 0.891 9 S 0.086 5.914 10 C -0.246 4.246 11 C 0.323 3.677 12 O -0.379 6.379 13 O -0.267 6.267 14 C -0.005 4.005 15 C -0.021 4.021 16 O -0.180 6.180 17 C 0.143 3.857 18 C -0.241 4.241 19 C -0.069 4.069 20 C -0.190 4.190 21 C -0.066 4.066 22 C -0.181 4.181 23 C 0.344 3.656 24 N -0.423 5.423 25 O -0.384 6.384 26 H 0.081 0.919 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.225 0.775 38 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 20.019 -23.472 -3.330 31.029 hybrid contribution -0.631 -0.725 -0.178 0.977 sum 19.389 -24.197 -3.508 31.205 Atomic orbital electron populations 1.69939 1.05866 1.27799 1.47843 1.24699 0.94467 0.98935 0.93151 0.86737 0.81835 0.83291 0.79987 1.19130 1.19848 1.15962 1.22274 0.87738 0.97763 1.59020 0.89056 1.84755 1.10029 0.99104 1.97553 1.22997 0.89913 1.04312 1.07419 1.23241 0.92009 0.80295 0.72160 1.90656 1.58892 1.43749 1.44606 1.86572 1.24432 1.31064 1.84599 1.22956 0.79582 0.93970 1.03959 1.23048 0.99574 0.92881 0.86576 1.86459 1.74840 1.18516 1.38198 1.19074 0.90747 0.83581 0.92336 1.21311 1.06539 0.95958 1.00275 1.21150 0.95268 0.93565 0.96920 1.20978 1.02863 1.00505 0.94622 1.21136 0.95144 0.91688 0.98679 1.19327 1.09163 0.94197 0.95448 1.18022 0.78591 0.87001 0.81995 1.43748 1.64189 1.13856 1.20540 1.90954 1.54081 1.14521 1.78849 0.91872 0.87061 0.87210 0.88890 0.89871 0.90417 0.89600 0.84620 0.85213 0.85246 0.85046 0.77496 0.76383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.75 13.97 55.49 0.78 -25.98 16 2 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 3 Si 0.86 21.92 27.74 -169.99 -4.72 17.21 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 7 C -0.52 -15.25 10.04 30.94 0.31 -14.94 16 8 H 0.09 2.79 8.03 -52.48 -0.42 2.37 16 9 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 10 C -0.10 -2.08 6.27 36.01 0.23 -1.85 16 11 C 0.48 9.52 7.98 36.01 0.29 9.80 16 12 O -0.49 -10.77 15.61 -18.75 -0.29 -11.06 16 13 O -0.35 -5.93 10.19 -42.03 -0.43 -6.36 16 14 C 0.07 0.90 5.84 37.15 0.22 1.12 16 15 C 0.05 0.54 5.13 37.15 0.19 0.74 16 16 O -0.27 -3.66 8.18 -44.09 -0.36 -4.02 16 17 C 0.19 2.15 6.70 -38.70 -0.26 1.89 16 18 C -0.22 -1.77 9.03 -39.47 -0.36 -2.13 16 19 C -0.05 -0.31 10.03 -39.53 -0.40 -0.71 16 20 C -0.17 -0.98 10.02 -39.63 -0.40 -1.38 16 21 C -0.05 -0.32 9.53 -39.20 -0.37 -0.69 16 22 C -0.18 -1.86 5.89 -104.85 -0.62 -2.48 16 23 C 0.56 6.89 8.04 -12.46 -0.10 6.79 16 24 N -0.86 -6.39 8.82 30.46 0.27 -6.13 16 25 O -0.51 -9.00 16.00 -16.58 -0.27 -9.26 16 26 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.11 2.28 8.14 -51.92 -0.42 1.86 16 28 H 0.11 2.13 8.14 -51.92 -0.42 1.71 16 29 H 0.09 1.01 8.13 -51.93 -0.42 0.58 16 30 H 0.08 1.15 8.13 -51.93 -0.42 0.72 16 31 H 0.08 0.67 7.66 -51.93 -0.40 0.27 16 32 H 0.09 0.57 7.66 -51.93 -0.40 0.17 16 33 H 0.14 0.80 6.30 -52.49 -0.33 0.47 16 34 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 35 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 36 H 0.13 0.43 6.40 -52.49 -0.34 0.09 16 37 H 0.40 1.50 6.86 -40.82 -0.28 1.22 16 38 H 0.41 2.75 8.93 -40.82 -0.36 2.39 16 LS Contribution 348.83 15.07 5.26 5.26 Total: -1.00 -38.79 348.83 -7.34 -46.13 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.22 Total: 0.93 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -1.36 Total: -1.07 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 1.04 Total: -32.10 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -1.35 Total: -30.71 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.72 Total: 17.21 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -38.79 -7.34 -46.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733070896.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.542 kcal (2) G-P(sol) polarization free energy of solvation -38.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds