Wall clock time and date at job start Fri Apr 10 2020 14:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86806 * 120.00010 * 2 1 4 4 H 1.48497 * 109.47268 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46812 * 299.99829 * 3 2 1 6 6 H 1.48501 * 109.47059 * 59.99296 * 3 2 1 7 7 C 1.39933 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00309 * 197.72068 * 7 2 1 9 9 C 1.41444 * 119.99954 * 17.71958 * 7 2 1 10 10 C 1.40780 * 120.17600 * 204.33518 * 9 7 2 11 11 C 1.37716 * 120.04054 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.40902 * 0.03747 * 11 10 9 13 13 C 1.39876 * 120.35850 * 359.97438 * 12 11 10 14 14 C 1.47892 * 120.02924 * 179.97438 * 13 12 11 15 15 O 1.21545 * 120.00489 * 179.97438 * 14 13 12 16 16 N 1.34784 * 119.99398 * 0.02562 * 14 13 12 17 17 S 1.65602 * 119.99540 * 179.97438 * 16 14 13 18 18 O 1.42099 * 104.27883 * 308.92604 * 17 16 14 19 19 O 1.42101 * 104.27403 * 181.06914 * 17 16 14 20 20 C 1.81401 * 104.45047 * 65.00201 * 17 16 14 21 21 H 1.09002 * 110.43218 * 298.90692 * 20 17 16 22 22 C 1.54808 * 110.48592 * 176.21918 * 20 17 16 23 23 C 1.54996 * 102.09202 * 220.43982 * 22 20 17 24 24 O 1.44387 * 103.48747 * 37.02386 * 23 22 20 25 25 C 1.43743 * 106.97717 * 319.93785 * 24 23 22 26 26 C 1.39039 * 119.95291 * 0.27490 * 13 12 11 27 27 H 0.97003 * 120.00139 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.98659 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.79534 * 180.02562 * 11 10 9 30 30 H 1.07999 * 119.82335 * 180.02562 * 12 11 10 31 31 H 0.96993 * 120.00197 * 0.02562 * 16 14 13 32 32 H 1.08998 * 110.90758 * 338.63939 * 22 20 17 33 33 H 1.09006 * 110.90752 * 102.24181 * 22 20 17 34 34 H 1.09000 * 110.61667 * 278.52719 * 23 22 20 35 35 H 1.08994 * 110.75717 * 155.58762 * 23 22 20 36 36 H 1.08998 * 109.87884 * 267.09228 * 25 24 23 37 37 H 1.08999 * 109.87593 * 145.93642 * 25 24 23 38 38 H 1.07998 * 120.20442 * 179.70407 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8833 2.3966 1.2124 7 6 2.0079 -1.2118 0.0005 8 1 3.0495 -1.2339 0.2852 9 6 1.3511 -2.4079 -0.3717 10 6 1.8278 -3.6499 0.0887 11 6 1.1865 -4.8128 -0.2759 12 6 0.0725 -4.7708 -1.0956 13 6 -0.4155 -3.5461 -1.5631 14 6 -1.6063 -3.5097 -2.4393 15 8 -2.0303 -2.4452 -2.8448 16 7 -2.2221 -4.6571 -2.7872 17 16 -3.5560 -4.6164 -3.7679 18 8 -4.4155 -3.6676 -3.1512 19 8 -3.9395 -5.9788 -3.8944 20 6 -2.9358 -3.9802 -5.3494 21 1 -2.5235 -2.9793 -5.2216 22 6 -4.0633 -3.9735 -6.4103 23 6 -3.3166 -4.4543 -7.6806 24 8 -2.3906 -5.4397 -7.1743 25 6 -1.8729 -4.9307 -5.9337 26 6 0.2235 -2.3632 -1.2085 27 1 -0.4850 0.8401 -0.0004 28 1 2.6971 -3.6909 0.7284 29 1 1.5554 -5.7634 0.0800 30 1 -0.4234 -5.6885 -1.3753 31 1 -1.8845 -5.5065 -2.4627 32 1 -4.8569 -4.6695 -6.1387 33 1 -4.4603 -2.9680 -6.5496 34 1 -2.7805 -3.6276 -8.1467 35 1 -4.0106 -4.9078 -8.3882 36 1 -0.9469 -4.3850 -6.1146 37 1 -1.6915 -5.7537 -5.2424 38 1 -0.1469 -1.4158 -1.5710 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733724145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:27 Heat of formation + Delta-G solvation = -132.612608 kcal Electronic energy + Delta-G solvation = -25531.111316 eV Core-core repulsion = 21658.615660 eV Total energy + Delta-G solvation = -3872.495655 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.79003 -39.57430 -37.40961 -37.05738 -36.10701 -34.37338 -33.71523 -32.70293 -30.32938 -29.67738 -29.60261 -25.51574 -23.73199 -23.45888 -22.31835 -21.19221 -20.39242 -19.42880 -18.34859 -17.86233 -17.40325 -16.90684 -16.33557 -15.83862 -15.49747 -15.20911 -14.94997 -14.81720 -14.59461 -14.36931 -13.48202 -13.39625 -13.25201 -13.06348 -12.73441 -12.51761 -12.30792 -12.23835 -12.07563 -11.97431 -11.82523 -11.60429 -11.32583 -11.21204 -10.96699 -10.86833 -10.63141 -10.43339 -10.35916 -10.03617 -9.86615 -9.53502 -9.35747 -7.87864 -7.69785 -6.94053 -4.55781 -0.03351 1.75310 2.36641 2.65608 3.00195 3.01978 3.05960 3.28108 3.41575 3.56709 3.76436 3.81743 4.04771 4.44551 4.48179 4.56507 4.69109 4.82063 4.93633 5.20340 5.27609 5.30369 5.32682 5.36641 5.41827 5.48325 5.89779 6.10062 6.39311 6.50359 6.70314 6.82553 6.94907 7.05596 7.17693 7.51157 7.58916 7.78471 7.96161 8.08459 8.33109 8.64943 8.66778 10.00746 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.017025 B = 0.003652 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.268239 B = 7666.062982 C = 8184.676236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.456 4.456 8 H 0.084 0.916 9 C 0.097 3.903 10 C -0.205 4.205 11 C -0.094 4.094 12 C -0.217 4.217 13 C -0.135 4.135 14 C 0.585 3.415 15 O -0.504 6.504 16 N -1.053 6.053 17 S 2.604 3.396 18 O -0.925 6.925 19 O -0.944 6.944 20 C -0.632 4.632 21 H 0.163 0.837 22 C -0.130 4.130 23 C 0.054 3.946 24 O -0.367 6.367 25 C 0.079 3.921 26 C -0.086 4.086 27 H 0.287 0.713 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.433 0.567 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 -6.243 -10.760 13.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.484 4.484 8 H 0.102 0.898 9 C 0.095 3.905 10 C -0.225 4.225 11 C -0.112 4.112 12 C -0.237 4.237 13 C -0.140 4.140 14 C 0.377 3.623 15 O -0.378 6.378 16 N -0.820 5.820 17 S 2.697 3.303 18 O -0.915 6.915 19 O -0.934 6.934 20 C -0.741 4.741 21 H 0.181 0.819 22 C -0.170 4.170 23 C -0.023 4.023 24 O -0.285 6.285 25 C 0.001 3.999 26 C -0.106 4.106 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.271 0.729 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.148 -5.730 -10.876 13.328 hybrid contribution 0.886 0.772 0.130 1.182 sum -4.263 -4.959 -10.746 12.579 Atomic orbital electron populations 1.69773 1.07627 1.30025 1.33072 1.25996 0.94796 1.01729 0.92202 0.86204 0.80872 0.80599 0.78814 1.18253 1.19492 1.19796 1.19661 0.98293 0.90918 1.39566 0.89803 1.17601 0.91119 0.92614 0.89211 1.21160 1.03325 0.92669 1.05341 1.20458 0.95767 0.96973 0.98024 1.20346 1.01305 0.94494 1.07576 1.19285 0.96083 0.95878 1.02745 1.18904 0.83211 0.81295 0.78852 1.90848 1.64641 1.28511 1.53825 1.54995 1.48594 1.17251 1.61167 1.05536 0.73939 0.74731 0.76079 1.93659 1.62150 1.63861 1.71790 1.93638 1.80129 1.33129 1.86532 1.31971 1.07946 1.13525 1.20643 0.81945 1.22952 0.95767 1.04474 0.93764 1.23575 0.91259 0.92144 0.95323 1.88884 1.60891 1.42617 1.36141 1.22802 0.94914 0.95371 0.86805 1.21702 0.96285 0.96229 0.96405 0.90217 0.88311 0.88484 0.88846 0.72898 0.89719 0.87766 0.91187 0.87929 0.89836 0.89185 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.68 10.96 55.55 0.61 -19.07 16 2 C 0.07 1.73 5.14 -17.35 -0.09 1.64 16 3 Si 0.91 17.79 29.59 -169.99 -5.03 12.76 16 4 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.46 -11.26 9.05 -37.73 -0.34 -11.60 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 9 C 0.10 2.40 5.57 -106.87 -0.60 1.81 16 10 C -0.20 -4.52 9.78 -38.81 -0.38 -4.90 16 11 C -0.09 -1.84 10.01 -39.72 -0.40 -2.24 16 12 C -0.22 -4.17 9.55 -38.92 -0.37 -4.54 16 13 C -0.13 -2.90 5.87 -105.03 -0.62 -3.52 16 14 C 0.59 11.48 7.51 -12.30 -0.09 11.38 16 15 O -0.50 -11.04 14.49 -11.81 -0.17 -11.21 16 16 N -1.05 -16.24 5.49 30.54 0.17 -16.07 16 17 S 2.60 39.01 4.21 -107.50 -0.45 38.55 16 18 O -0.92 -17.54 17.04 -64.79 -1.10 -18.65 16 19 O -0.94 -14.76 17.85 -57.54 -1.03 -15.78 16 20 C -0.63 -7.64 3.46 -25.20 -0.09 -7.72 16 21 H 0.16 1.98 7.28 -51.93 -0.38 1.60 16 22 C -0.13 -1.28 6.73 -24.72 -0.17 -1.44 16 23 C 0.05 0.49 7.72 38.21 0.29 0.78 16 24 O -0.37 -4.40 11.52 -35.23 -0.41 -4.81 16 25 C 0.08 0.90 7.31 37.73 0.28 1.18 16 26 C -0.09 -2.12 8.24 -38.44 -0.32 -2.44 16 27 H 0.29 6.62 8.30 -40.82 -0.34 6.29 16 28 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 29 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 30 H 0.09 1.43 6.38 -52.49 -0.33 1.09 16 31 H 0.43 5.44 6.81 -34.47 -0.23 5.21 16 32 H 0.08 0.78 7.83 -51.93 -0.41 0.37 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.95 7.46 -51.93 -0.39 0.56 16 38 H 0.14 3.61 5.75 -52.49 -0.30 3.31 16 LS Contribution 334.79 15.07 5.05 5.05 Total: -1.00 -31.74 334.79 -9.38 -41.13 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -4.13 Total: 9.72 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -2.88 Total: -21.62 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.78 Total: -35.14 kcal Atomic # 8 Polarization: -47.74 SS G_CDS: -2.71 Total: -50.45 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Atomic # 16 Polarization: 39.01 SS G_CDS: -0.45 Total: 38.55 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.74 -9.38 -41.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733724145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.487 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds