Wall clock time and date at job start Fri Apr 10 2020 14:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86806 * 120.00010 * 2 1 4 4 H 1.48497 * 109.47268 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46812 * 299.99829 * 3 2 1 6 6 H 1.48501 * 109.47059 * 59.99296 * 3 2 1 7 7 C 1.39933 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00309 * 197.72068 * 7 2 1 9 9 C 1.41444 * 119.99954 * 17.71958 * 7 2 1 10 10 C 1.40780 * 120.17600 * 204.33518 * 9 7 2 11 11 C 1.37716 * 120.04054 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.40902 * 0.03747 * 11 10 9 13 13 C 1.39876 * 120.35850 * 359.97438 * 12 11 10 14 14 C 1.47892 * 120.02924 * 179.97438 * 13 12 11 15 15 O 1.21545 * 120.00489 * 179.97438 * 14 13 12 16 16 N 1.34784 * 119.99398 * 0.02562 * 14 13 12 17 17 S 1.65602 * 119.99540 * 179.97438 * 16 14 13 18 18 O 1.42099 * 104.27883 * 308.92604 * 17 16 14 19 19 O 1.42101 * 104.27403 * 181.06914 * 17 16 14 20 20 C 1.81401 * 104.45047 * 65.00201 * 17 16 14 21 21 H 1.09002 * 110.43218 * 298.90692 * 20 17 16 22 22 C 1.54808 * 110.48592 * 176.21918 * 20 17 16 23 23 C 1.54996 * 102.09202 * 220.43982 * 22 20 17 24 24 O 1.44387 * 103.48747 * 37.02386 * 23 22 20 25 25 C 1.43743 * 106.97717 * 319.93785 * 24 23 22 26 26 C 1.39039 * 119.95291 * 0.27490 * 13 12 11 27 27 H 0.97003 * 120.00139 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.98659 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.79534 * 180.02562 * 11 10 9 30 30 H 1.07999 * 119.82335 * 180.02562 * 12 11 10 31 31 H 0.96993 * 120.00197 * 0.02562 * 16 14 13 32 32 H 1.08998 * 110.90758 * 338.63939 * 22 20 17 33 33 H 1.09006 * 110.90752 * 102.24181 * 22 20 17 34 34 H 1.09000 * 110.61667 * 278.52719 * 23 22 20 35 35 H 1.08994 * 110.75717 * 155.58762 * 23 22 20 36 36 H 1.08998 * 109.87884 * 267.09228 * 25 24 23 37 37 H 1.08999 * 109.87593 * 145.93642 * 25 24 23 38 38 H 1.07998 * 120.20442 * 179.70407 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8833 2.3966 1.2124 7 6 2.0079 -1.2118 0.0005 8 1 3.0495 -1.2339 0.2852 9 6 1.3511 -2.4079 -0.3717 10 6 1.8278 -3.6499 0.0887 11 6 1.1865 -4.8128 -0.2759 12 6 0.0725 -4.7708 -1.0956 13 6 -0.4155 -3.5461 -1.5631 14 6 -1.6063 -3.5097 -2.4393 15 8 -2.0303 -2.4452 -2.8448 16 7 -2.2221 -4.6571 -2.7872 17 16 -3.5560 -4.6164 -3.7679 18 8 -4.4155 -3.6676 -3.1512 19 8 -3.9395 -5.9788 -3.8944 20 6 -2.9358 -3.9802 -5.3494 21 1 -2.5235 -2.9793 -5.2216 22 6 -4.0633 -3.9735 -6.4103 23 6 -3.3166 -4.4543 -7.6806 24 8 -2.3906 -5.4397 -7.1743 25 6 -1.8729 -4.9307 -5.9337 26 6 0.2235 -2.3632 -1.2085 27 1 -0.4850 0.8401 -0.0004 28 1 2.6971 -3.6909 0.7284 29 1 1.5554 -5.7634 0.0800 30 1 -0.4234 -5.6885 -1.3753 31 1 -1.8845 -5.5065 -2.4627 32 1 -4.8569 -4.6695 -6.1387 33 1 -4.4603 -2.9680 -6.5496 34 1 -2.7805 -3.6276 -8.1467 35 1 -4.0106 -4.9078 -8.3882 36 1 -0.9469 -4.3850 -6.1146 37 1 -1.6915 -5.7537 -5.2424 38 1 -0.1469 -1.4158 -1.5710 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733724145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:27 Heat of formation + Delta-G solvation = -155.685498 kcal Electronic energy + Delta-G solvation = -25532.111831 eV Core-core repulsion = 21658.615660 eV Total energy + Delta-G solvation = -3873.496171 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.35286 -40.42216 -39.01897 -38.42212 -37.42513 -35.93078 -35.35910 -33.59132 -32.01245 -31.33431 -30.46831 -27.28064 -25.26385 -24.35769 -23.21935 -22.86875 -21.94924 -20.72270 -19.87202 -19.17682 -18.55484 -18.09163 -17.67531 -17.10508 -16.75338 -16.58488 -16.40092 -16.08510 -16.02053 -15.78693 -15.17073 -14.69455 -14.35038 -14.23597 -14.12290 -13.89733 -13.57920 -13.52833 -13.40959 -13.15364 -12.99755 -12.88377 -12.81285 -12.58935 -12.38044 -12.21788 -12.16794 -12.05014 -11.57740 -11.53669 -11.16701 -11.09820 -10.85815 -9.59323 -9.42717 -8.68640 -6.39526 -1.23191 0.09764 0.97633 1.08951 1.38623 1.44442 1.54054 1.72034 2.19070 2.34912 2.54470 2.72272 2.87444 2.93432 3.38860 3.59049 3.65294 3.75342 3.88224 3.92481 4.03939 4.37780 4.41670 4.46245 4.55351 4.58718 4.72648 4.74588 4.85479 5.04473 5.12708 5.27904 5.45890 5.54987 5.61045 5.81585 5.90730 6.03282 6.25609 6.49045 6.56175 6.86940 6.90397 8.28399 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.017025 B = 0.003652 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.268239 B = 7666.062982 C = 8184.676236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.032 3.968 3 Si 0.980 3.020 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.493 4.493 8 H 0.085 0.915 9 C 0.067 3.933 10 C -0.208 4.208 11 C -0.094 4.094 12 C -0.196 4.196 13 C -0.145 4.145 14 C 0.592 3.408 15 O -0.532 6.532 16 N -1.039 6.039 17 S 2.608 3.392 18 O -0.969 6.969 19 O -0.950 6.950 20 C -0.615 4.615 21 H 0.162 0.838 22 C -0.139 4.139 23 C 0.050 3.950 24 O -0.384 6.384 25 C 0.072 3.928 26 C -0.123 4.123 27 H 0.288 0.712 28 H 0.110 0.890 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.446 0.554 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.454 -8.114 -11.959 14.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.183 4.183 3 Si 0.801 3.199 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.523 4.523 8 H 0.103 0.897 9 C 0.064 3.936 10 C -0.228 4.228 11 C -0.112 4.112 12 C -0.215 4.215 13 C -0.150 4.150 14 C 0.384 3.616 15 O -0.408 6.408 16 N -0.805 5.805 17 S 2.705 3.295 18 O -0.960 6.960 19 O -0.940 6.940 20 C -0.728 4.728 21 H 0.179 0.821 22 C -0.178 4.178 23 C -0.026 4.026 24 O -0.303 6.303 25 C -0.006 4.006 26 C -0.143 4.143 27 H 0.098 0.902 28 H 0.128 0.872 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.287 0.713 32 H 0.108 0.892 33 H 0.142 0.858 34 H 0.103 0.897 35 H 0.145 0.855 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.781 -7.665 -12.032 15.046 hybrid contribution 0.714 1.099 0.404 1.372 sum -4.067 -6.566 -11.629 13.960 Atomic orbital electron populations 1.69865 1.09186 1.30728 1.35257 1.26804 0.95347 1.04851 0.91287 0.85178 0.79717 0.76255 0.78747 1.17447 1.19403 1.19215 1.19903 0.98606 0.92076 1.41675 0.89689 1.17931 0.91803 0.93909 0.89936 1.21475 1.03629 0.92737 1.04965 1.20943 0.95215 0.97893 0.97160 1.20931 1.00370 0.95218 1.05004 1.19550 0.96551 0.95996 1.02905 1.18625 0.82793 0.81825 0.78373 1.90836 1.65325 1.29967 1.54675 1.54728 1.47967 1.16589 1.61252 1.05340 0.73355 0.74057 0.76770 1.93610 1.63778 1.64840 1.73733 1.93625 1.80190 1.33317 1.86874 1.31799 1.09267 1.13319 1.18446 0.82059 1.23199 0.95277 1.06051 0.93281 1.23841 0.91281 0.92380 0.95107 1.88867 1.61557 1.43750 1.36129 1.22965 0.94922 0.95585 0.87102 1.21528 0.97917 0.96379 0.98499 0.90158 0.87178 0.84118 0.84083 0.71342 0.89173 0.85848 0.89727 0.85478 0.88676 0.88372 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.93 10.96 21.82 0.24 -43.69 16 2 C 0.03 1.61 5.14 85.25 0.44 2.05 16 3 Si 0.98 37.72 29.59 68.60 2.03 39.75 16 4 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 5 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 6 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.49 -25.38 9.05 23.47 0.21 -25.17 16 8 H 0.09 4.14 7.91 -2.91 -0.02 4.11 16 9 C 0.07 3.38 5.57 -21.32 -0.12 3.26 16 10 C -0.21 -9.01 9.78 22.77 0.22 -8.79 16 11 C -0.09 -3.40 10.01 22.18 0.22 -3.17 16 12 C -0.20 -6.92 9.55 22.70 0.22 -6.70 16 13 C -0.14 -6.20 5.87 -20.13 -0.12 -6.32 16 14 C 0.59 23.09 7.51 86.80 0.65 23.74 16 15 O -0.53 -23.91 14.49 12.52 0.18 -23.73 16 16 N -1.04 -30.47 5.49 -175.56 -0.96 -31.43 16 17 S 2.61 75.43 4.21 -56.49 -0.24 75.20 16 18 O -0.97 -36.96 17.04 -120.72 -2.06 -39.01 16 19 O -0.95 -28.08 17.85 -127.65 -2.28 -30.35 16 20 C -0.62 -13.92 3.46 31.58 0.11 -13.81 16 21 H 0.16 3.80 7.28 -2.39 -0.02 3.78 16 22 C -0.14 -2.41 6.73 31.89 0.21 -2.19 16 23 C 0.05 0.76 7.72 72.67 0.56 1.32 16 24 O -0.38 -8.22 11.52 -148.98 -1.72 -9.93 16 25 C 0.07 1.49 7.31 72.35 0.53 2.02 16 26 C -0.12 -6.28 8.24 23.01 0.19 -6.09 16 27 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 28 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 29 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 30 H 0.14 3.59 6.38 -2.91 -0.02 3.57 16 31 H 0.45 9.94 6.81 -96.75 -0.66 9.28 16 32 H 0.09 1.47 7.83 -2.39 -0.02 1.45 16 33 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.10 1.82 7.46 -2.39 -0.02 1.80 16 38 H 0.11 6.03 5.75 -2.91 -0.02 6.02 16 Total: -1.00 -71.99 334.79 -1.02 -73.00 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.46 Total: 30.05 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: 3.33 Total: -39.85 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -0.72 Total: -75.12 kcal Atomic # 8 Polarization: -97.16 SS G_CDS: -5.87 Total: -103.03 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Atomic # 16 Polarization: 75.43 SS G_CDS: -0.24 Total: 75.20 kcal Total: -71.99 -1.02 -73.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733724145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.684 kcal (2) G-P(sol) polarization free energy of solvation -71.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds