Wall clock time and date at job start Fri Apr 10 2020 14:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86798 * 120.00044 * 2 1 4 4 H 1.48495 * 109.47498 * 265.00257 * 3 2 1 5 5 H 1.48500 * 109.46980 * 25.00441 * 3 2 1 6 6 H 1.48499 * 109.47268 * 144.99886 * 3 2 1 7 7 C 1.39943 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00417 * 158.89952 * 7 2 1 9 9 C 1.41393 * 120.00192 * 338.89143 * 7 2 1 10 10 C 1.40720 * 120.24711 * 158.53876 * 9 7 2 11 11 C 1.37619 * 119.74392 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24836 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.74751 * 179.97438 * 12 11 10 14 14 O 1.45204 * 109.47195 * 89.99936 * 13 12 11 15 15 C 1.34232 * 116.99914 * 179.97438 * 14 13 12 16 16 O 1.20825 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.50694 * 119.99844 * 180.27677 * 15 14 13 18 18 S 1.81401 * 115.55363 * 45.40681 * 17 15 14 19 19 N 1.65599 * 104.44620 * 58.72166 * 18 17 15 20 20 O 1.42099 * 110.54540 * 170.35017 * 18 17 15 21 21 O 1.42100 * 110.53968 * 307.09975 * 18 17 15 22 22 C 1.53007 * 117.49801 * 259.73656 * 17 15 14 23 23 C 1.53002 * 117.49642 * 191.07935 * 17 15 14 24 24 C 1.38635 * 120.50191 * 0.25141 * 12 11 10 25 25 C 1.37616 * 120.24923 * 359.45307 * 24 12 11 26 26 H 0.96992 * 120.00264 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.12584 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.87386 * 180.02562 * 11 10 9 29 29 H 1.09005 * 109.46869 * 330.00107 * 13 12 11 30 30 H 1.08998 * 109.47033 * 210.00044 * 13 12 11 31 31 H 0.96995 * 120.00413 * 358.11574 * 19 18 17 32 32 H 0.97005 * 119.99451 * 178.11444 * 19 18 17 33 33 H 1.09002 * 117.49924 * 0.02562 * 22 17 15 34 34 H 1.09004 * 117.49807 * 145.01933 * 22 17 15 35 35 H 1.09010 * 117.49593 * 214.97621 * 23 17 15 36 36 H 1.08998 * 117.50157 * 359.97431 * 23 17 15 37 37 H 1.08006 * 119.86906 * 179.70184 * 24 12 11 38 38 H 1.07998 * 120.12801 * 180.27704 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.5954 1.9855 -1.3947 5 1 1.3908 2.6808 0.5918 6 1 3.4829 1.4730 0.8031 7 6 2.0080 -1.2119 -0.0005 8 1 3.0337 -1.2432 -0.3373 9 6 1.3722 -2.3956 0.4399 10 6 1.8617 -3.6534 0.0418 11 6 1.2346 -4.7988 0.4762 12 6 0.1244 -4.7167 1.3025 13 6 -0.5539 -5.9782 1.7710 14 8 0.0439 -6.4138 3.0205 15 6 -0.4506 -7.5314 3.5757 16 8 -1.3529 -8.1262 3.0352 17 6 0.1156 -8.0410 4.8759 18 16 0.3693 -6.7885 6.1633 19 7 -1.1337 -6.1381 6.4087 20 8 0.6911 -7.4051 7.4024 21 8 1.1415 -5.7066 5.6610 22 6 1.1178 -9.1951 4.8058 23 6 -0.3003 -9.4429 5.3262 24 6 -0.3699 -3.4828 1.6963 25 6 0.2448 -2.3244 1.2790 26 1 -0.4850 0.8400 0.0004 27 1 2.7262 -3.7196 -0.6022 28 1 1.6087 -5.7652 0.1722 29 1 -0.4316 -6.7574 1.0186 30 1 -1.6155 -5.7845 1.9242 31 1 -1.8864 -6.4423 5.8780 32 1 -1.2613 -5.4529 7.0834 33 1 1.3678 -9.5854 3.8193 34 1 1.9293 -9.2018 5.5336 35 1 -0.4211 -9.6125 6.3962 36 1 -0.9838 -9.9963 4.6824 37 1 -1.2384 -3.4307 2.3363 38 1 -0.1393 -1.3644 1.5907 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845205936.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:08 Heat of formation + Delta-G solvation = -108.561705 kcal Electronic energy + Delta-G solvation = -24996.447936 eV Core-core repulsion = 21124.995206 eV Total energy + Delta-G solvation = -3871.452730 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.60173 -38.02206 -37.45264 -36.89231 -36.08827 -35.99141 -33.90761 -33.32631 -30.87236 -29.35559 -27.61802 -25.72255 -23.65284 -23.18079 -21.37215 -21.08607 -20.08266 -19.49213 -18.78367 -17.58298 -17.40380 -17.01409 -16.72814 -16.27948 -15.66070 -15.55777 -15.34900 -14.70227 -14.18516 -13.86113 -13.77635 -13.09878 -12.61174 -12.54596 -12.39213 -12.26310 -12.17565 -12.11529 -12.02699 -12.01461 -11.66772 -11.50550 -11.27628 -11.12146 -10.98338 -10.67675 -10.65647 -10.58946 -10.43260 -10.27907 -9.72308 -9.48402 -9.16706 -7.56209 -7.46964 -6.90713 -4.45228 -0.04887 1.82517 2.18631 2.62829 2.84826 2.90627 3.01802 3.04226 3.06661 3.21188 3.36979 3.71490 3.85055 4.08606 4.39455 4.63051 4.66999 4.98415 5.05187 5.26286 5.47201 5.53710 5.57409 5.66748 5.80455 6.00351 6.23973 6.31171 6.57337 6.86514 6.88156 6.95841 7.19521 7.27420 7.51770 7.69144 7.78734 7.96273 8.01753 8.19193 8.53823 8.78329 8.87807 10.02883 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.020059 B = 0.003067 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.517951 B = 9127.536242 C = 9760.048043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.077 3.923 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.453 4.453 8 H 0.081 0.919 9 C 0.120 3.880 10 C -0.233 4.233 11 C -0.059 4.059 12 C -0.242 4.242 13 C 0.136 3.864 14 O -0.332 6.332 15 C 0.504 3.496 16 O -0.499 6.499 17 C -0.671 4.671 18 S 2.658 3.342 19 N -1.247 6.247 20 O -0.956 6.956 21 O -0.921 6.921 22 C -0.094 4.094 23 C -0.096 4.096 24 C -0.070 4.070 25 C -0.175 4.175 26 H 0.284 0.716 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.413 0.587 32 H 0.422 0.578 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.088 0.912 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.712 -13.417 10.385 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.482 4.482 8 H 0.099 0.901 9 C 0.117 3.883 10 C -0.253 4.253 11 C -0.078 4.078 12 C -0.243 4.243 13 C 0.065 3.935 14 O -0.248 6.248 15 C 0.345 3.655 16 O -0.388 6.388 17 C -0.758 4.758 18 S 2.743 3.257 19 N -0.921 5.921 20 O -0.945 6.945 21 O -0.910 6.910 22 C -0.132 4.132 23 C -0.134 4.134 24 C -0.088 4.088 25 C -0.194 4.194 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.239 0.761 32 H 0.253 0.747 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.107 0.893 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.193 -13.230 10.544 17.059 hybrid contribution -0.631 0.691 -0.652 1.141 sum -2.824 -12.538 9.891 16.218 Atomic orbital electron populations 1.69833 1.07810 1.29704 1.33026 1.25997 0.94709 1.01671 0.91904 0.86314 0.80748 0.80146 0.79542 1.19272 1.19976 1.18244 1.19690 0.99552 0.91714 1.37199 0.90072 1.17681 0.90617 0.92002 0.87962 1.20907 1.04081 0.92556 1.07724 1.20357 0.94174 0.96649 0.96593 1.18569 1.03926 0.91368 1.10463 1.21892 0.95998 0.95198 0.80418 1.86848 1.59526 1.38306 1.40109 1.21063 0.80301 0.80158 0.83970 1.90633 1.28332 1.57694 1.62127 1.31700 1.20293 1.10318 1.13489 1.03689 0.73251 0.74618 0.74123 1.52998 1.28626 1.57159 1.53333 1.93610 1.82776 1.78848 1.39298 1.93714 1.67851 1.48743 1.80645 1.23026 0.93279 0.91269 1.05657 1.23129 0.98576 0.87876 1.03782 1.20503 0.98024 0.92459 0.97843 1.21297 0.99600 0.96960 1.01542 0.90539 0.88716 0.89374 0.91775 0.91621 0.76063 0.74714 0.85927 0.85716 0.85309 0.85520 0.89339 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.58 10.96 55.55 0.61 -18.97 16 2 C 0.08 1.89 5.09 -17.34 -0.09 1.80 16 3 Si 0.91 18.17 29.61 -169.99 -5.03 13.13 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.45 -11.84 9.05 -37.74 -0.34 -12.18 16 8 H 0.08 2.03 7.93 -52.48 -0.42 1.61 16 9 C 0.12 3.19 5.60 -106.82 -0.60 2.60 16 10 C -0.23 -5.73 9.80 -38.87 -0.38 -6.11 16 11 C -0.06 -1.35 9.67 -39.66 -0.38 -1.73 16 12 C -0.24 -5.41 5.54 -104.33 -0.58 -5.99 16 13 C 0.14 2.55 5.58 36.01 0.20 2.75 16 14 O -0.33 -6.01 9.70 -40.34 -0.39 -6.40 16 15 C 0.50 7.51 7.41 36.00 0.27 7.77 16 16 O -0.50 -7.98 16.07 -18.75 -0.30 -8.28 16 17 C -0.67 -7.49 2.62 -91.77 -0.24 -7.73 16 18 S 2.66 32.47 5.88 -107.50 -0.63 31.83 16 19 N -1.25 -11.82 9.43 60.35 0.57 -11.25 16 20 O -0.96 -12.48 17.77 -57.54 -1.02 -13.50 16 21 O -0.92 -15.87 17.69 -58.88 -1.04 -16.91 16 22 C -0.09 -0.77 10.00 -26.69 -0.27 -1.04 16 23 C -0.10 -0.74 9.68 -26.69 -0.26 -0.99 16 24 C -0.07 -1.65 9.67 -39.66 -0.38 -2.03 16 25 C -0.17 -4.54 8.73 -38.87 -0.34 -4.88 16 26 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 27 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 28 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 30 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 31 H 0.41 3.24 8.83 -34.47 -0.30 2.93 16 32 H 0.42 3.31 8.96 -34.47 -0.31 3.00 16 33 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.12 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.13 0.72 7.98 -51.92 -0.41 0.31 16 36 H 0.13 0.95 7.72 -51.93 -0.40 0.54 16 37 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 38 H 0.12 3.19 6.06 -52.49 -0.32 2.87 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -33.66 349.24 -9.62 -43.28 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -4.25 Total: 9.58 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -3.39 Total: -27.77 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: 1.18 Total: -30.22 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -2.76 Total: -45.10 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.13 kcal Atomic # 16 Polarization: 32.47 SS G_CDS: -0.63 Total: 31.83 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.66 -9.62 -43.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845205936.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.282 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds