Wall clock time and date at job start Fri Apr 10 2020 14:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86798 * 120.00044 * 2 1 4 4 H 1.48495 * 109.47498 * 265.00257 * 3 2 1 5 5 H 1.48500 * 109.46980 * 25.00441 * 3 2 1 6 6 H 1.48499 * 109.47268 * 144.99886 * 3 2 1 7 7 C 1.39943 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00417 * 158.89952 * 7 2 1 9 9 C 1.41393 * 120.00192 * 338.89143 * 7 2 1 10 10 C 1.40720 * 120.24711 * 158.53876 * 9 7 2 11 11 C 1.37619 * 119.74392 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24836 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.74751 * 179.97438 * 12 11 10 14 14 O 1.45204 * 109.47195 * 89.99936 * 13 12 11 15 15 C 1.34232 * 116.99914 * 179.97438 * 14 13 12 16 16 O 1.20825 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.50694 * 119.99844 * 180.27677 * 15 14 13 18 18 S 1.81401 * 115.55363 * 45.40681 * 17 15 14 19 19 N 1.65599 * 104.44620 * 58.72166 * 18 17 15 20 20 O 1.42099 * 110.54540 * 170.35017 * 18 17 15 21 21 O 1.42100 * 110.53968 * 307.09975 * 18 17 15 22 22 C 1.53007 * 117.49801 * 259.73656 * 17 15 14 23 23 C 1.53002 * 117.49642 * 191.07935 * 17 15 14 24 24 C 1.38635 * 120.50191 * 0.25141 * 12 11 10 25 25 C 1.37616 * 120.24923 * 359.45307 * 24 12 11 26 26 H 0.96992 * 120.00264 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.12584 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.87386 * 180.02562 * 11 10 9 29 29 H 1.09005 * 109.46869 * 330.00107 * 13 12 11 30 30 H 1.08998 * 109.47033 * 210.00044 * 13 12 11 31 31 H 0.96995 * 120.00413 * 358.11574 * 19 18 17 32 32 H 0.97005 * 119.99451 * 178.11444 * 19 18 17 33 33 H 1.09002 * 117.49924 * 0.02562 * 22 17 15 34 34 H 1.09004 * 117.49807 * 145.01933 * 22 17 15 35 35 H 1.09010 * 117.49593 * 214.97621 * 23 17 15 36 36 H 1.08998 * 117.50157 * 359.97431 * 23 17 15 37 37 H 1.08006 * 119.86906 * 179.70184 * 24 12 11 38 38 H 1.07998 * 120.12801 * 180.27704 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.5954 1.9855 -1.3947 5 1 1.3908 2.6808 0.5918 6 1 3.4829 1.4730 0.8031 7 6 2.0080 -1.2119 -0.0005 8 1 3.0337 -1.2432 -0.3373 9 6 1.3722 -2.3956 0.4399 10 6 1.8617 -3.6534 0.0418 11 6 1.2346 -4.7988 0.4762 12 6 0.1244 -4.7167 1.3025 13 6 -0.5539 -5.9782 1.7710 14 8 0.0439 -6.4138 3.0205 15 6 -0.4506 -7.5314 3.5757 16 8 -1.3529 -8.1262 3.0352 17 6 0.1156 -8.0410 4.8759 18 16 0.3693 -6.7885 6.1633 19 7 -1.1337 -6.1381 6.4087 20 8 0.6911 -7.4051 7.4024 21 8 1.1415 -5.7066 5.6610 22 6 1.1178 -9.1951 4.8058 23 6 -0.3003 -9.4429 5.3262 24 6 -0.3699 -3.4828 1.6963 25 6 0.2448 -2.3244 1.2790 26 1 -0.4850 0.8400 0.0004 27 1 2.7262 -3.7196 -0.6022 28 1 1.6087 -5.7652 0.1722 29 1 -0.4316 -6.7574 1.0186 30 1 -1.6155 -5.7845 1.9242 31 1 -1.8864 -6.4423 5.8780 32 1 -1.2613 -5.4529 7.0834 33 1 1.3678 -9.5854 3.8193 34 1 1.9293 -9.2018 5.5336 35 1 -0.4211 -9.6125 6.3962 36 1 -0.9838 -9.9963 4.6824 37 1 -1.2384 -3.4307 2.3363 38 1 -0.1393 -1.3644 1.5907 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845205936.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:08 Heat of formation + Delta-G solvation = -132.206441 kcal Electronic energy + Delta-G solvation = -24997.473249 eV Core-core repulsion = 21124.995206 eV Total energy + Delta-G solvation = -3872.478043 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.80991 -39.58520 -38.64510 -38.00522 -37.20785 -37.13296 -35.72858 -34.15613 -32.64677 -31.23289 -29.24124 -26.97539 -25.23421 -23.80529 -22.97197 -22.48128 -21.86202 -20.48877 -19.82358 -19.29388 -18.47923 -18.25840 -17.71808 -17.47570 -17.15490 -16.67032 -16.56030 -16.06146 -15.69089 -15.49247 -15.07085 -14.51484 -14.20989 -14.03684 -13.87196 -13.40400 -13.33968 -13.30734 -13.18061 -13.08924 -13.06681 -12.80947 -12.70427 -12.44866 -12.43192 -12.20362 -11.86800 -11.76513 -11.61277 -11.49215 -11.41314 -11.31494 -11.00243 -9.45540 -9.36700 -8.73401 -6.39634 -0.99887 0.66190 0.78530 1.11484 1.32985 1.38708 1.51277 1.60972 1.81638 2.10821 2.18163 2.44368 2.66024 2.88635 3.35421 3.52053 3.72868 3.80005 4.01971 4.07643 4.23710 4.44480 4.46169 4.47429 4.53110 4.70913 4.91086 4.99255 5.09662 5.11347 5.27815 5.31300 5.39552 5.63520 5.87516 6.04369 6.13129 6.19486 6.30446 6.48134 6.62824 6.86649 6.96607 8.23439 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.020059 B = 0.003067 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.517951 B = 9127.536242 C = 9760.048043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.038 3.962 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.493 4.493 8 H 0.080 0.920 9 C 0.088 3.912 10 C -0.251 4.251 11 C -0.063 4.063 12 C -0.239 4.239 13 C 0.139 3.861 14 O -0.352 6.352 15 C 0.508 3.492 16 O -0.509 6.509 17 C -0.684 4.684 18 S 2.674 3.326 19 N -1.239 6.239 20 O -0.966 6.966 21 O -0.979 6.979 22 C -0.092 4.092 23 C -0.073 4.073 24 C -0.078 4.078 25 C -0.201 4.201 26 H 0.292 0.708 27 H 0.102 0.898 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.422 0.578 32 H 0.429 0.571 33 H 0.131 0.869 34 H 0.147 0.853 35 H 0.154 0.846 36 H 0.133 0.867 37 H 0.108 0.892 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.019 -15.254 11.277 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.521 4.521 8 H 0.098 0.902 9 C 0.086 3.914 10 C -0.270 4.270 11 C -0.081 4.081 12 C -0.240 4.240 13 C 0.068 3.932 14 O -0.268 6.268 15 C 0.350 3.650 16 O -0.398 6.398 17 C -0.773 4.773 18 S 2.761 3.239 19 N -0.917 5.917 20 O -0.955 6.955 21 O -0.968 6.968 22 C -0.130 4.130 23 C -0.111 4.111 24 C -0.096 4.096 25 C -0.220 4.220 26 H 0.103 0.897 27 H 0.120 0.880 28 H 0.137 0.863 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.250 0.750 32 H 0.262 0.738 33 H 0.149 0.851 34 H 0.165 0.835 35 H 0.172 0.828 36 H 0.151 0.849 37 H 0.126 0.874 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.516 -15.074 11.458 19.101 hybrid contribution -0.636 1.009 -0.880 1.482 sum -3.152 -14.065 10.578 17.879 Atomic orbital electron populations 1.69868 1.09185 1.31090 1.33390 1.26841 0.95465 1.04762 0.90866 0.85206 0.79100 0.75531 0.79868 1.18225 1.18815 1.18418 1.19941 0.99893 0.92989 1.39291 0.90195 1.18046 0.91413 0.93175 0.88800 1.21139 1.04810 0.92762 1.08324 1.20716 0.93990 0.97389 0.96052 1.18963 1.03215 0.92551 1.09249 1.21730 0.96083 0.93988 0.81425 1.86788 1.60126 1.40120 1.39778 1.21471 0.79924 0.78937 0.84713 1.90629 1.28679 1.57628 1.62839 1.31516 1.23759 1.11236 1.10813 1.02888 0.73153 0.74084 0.73745 1.52764 1.27991 1.57344 1.53617 1.93595 1.83319 1.78870 1.39706 1.93659 1.69983 1.51575 1.81621 1.23439 0.94204 0.88381 1.06943 1.23446 0.98117 0.84089 1.05410 1.20789 0.98504 0.92481 0.97822 1.21292 1.00607 0.97255 1.02887 0.89691 0.87950 0.86316 0.90189 0.90390 0.74969 0.73797 0.85121 0.83543 0.82783 0.84863 0.87426 0.87663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.94 10.96 21.83 0.24 -41.70 16 2 C 0.04 1.89 5.09 85.26 0.43 2.33 16 3 Si 0.98 37.78 29.61 68.60 2.03 39.81 16 4 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 5 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.49 -26.80 9.05 23.46 0.21 -26.59 16 8 H 0.08 4.17 7.93 -2.91 -0.02 4.14 16 9 C 0.09 4.88 5.60 -21.29 -0.12 4.76 16 10 C -0.25 -12.61 9.80 22.73 0.22 -12.39 16 11 C -0.06 -2.85 9.67 22.22 0.21 -2.63 16 12 C -0.24 -10.55 5.54 -19.67 -0.11 -10.66 16 13 C 0.14 4.99 5.58 71.24 0.40 5.38 16 14 O -0.35 -12.22 9.70 -50.41 -0.49 -12.71 16 15 C 0.51 14.01 7.41 71.23 0.53 14.54 16 16 O -0.51 -14.96 16.07 21.97 0.35 -14.61 16 17 C -0.68 -13.56 2.62 -11.54 -0.03 -13.59 16 18 S 2.67 61.88 5.88 -56.49 -0.33 61.55 16 19 N -1.24 -21.81 9.43 37.02 0.35 -21.46 16 20 O -0.97 -23.43 17.77 -127.65 -2.27 -25.70 16 21 O -0.98 -33.93 17.69 -126.37 -2.23 -36.16 16 22 C -0.09 -1.20 10.00 30.62 0.31 -0.89 16 23 C -0.07 -0.84 9.68 30.62 0.30 -0.54 16 24 C -0.08 -3.72 9.67 22.22 0.21 -3.50 16 25 C -0.20 -10.87 8.73 22.73 0.20 -10.67 16 26 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 27 H 0.10 4.81 8.06 -2.91 -0.02 4.78 16 28 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 29 H 0.08 2.60 8.07 -2.38 -0.02 2.58 16 30 H 0.08 2.57 8.07 -2.39 -0.02 2.55 16 31 H 0.42 5.87 8.83 -96.75 -0.85 5.02 16 32 H 0.43 6.28 8.96 -96.74 -0.87 5.41 16 33 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.15 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.15 1.03 7.98 -2.38 -0.02 1.02 16 36 H 0.13 1.45 7.72 -2.39 -0.02 1.43 16 37 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 38 H 0.11 5.88 6.06 -2.91 -0.02 5.86 16 Total: -1.00 -74.72 349.24 -0.18 -74.91 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: -0.60 Total: 30.54 kcal Atomic # 6 Polarization: -57.22 SS G_CDS: 2.77 Total: -54.46 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: 0.59 Total: -63.16 kcal Atomic # 8 Polarization: -84.54 SS G_CDS: -4.64 Total: -89.18 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Atomic # 16 Polarization: 61.88 SS G_CDS: -0.33 Total: 61.55 kcal Total: -74.72 -0.18 -74.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845205936.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.301 kcal (2) G-P(sol) polarization free energy of solvation -74.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds