Wall clock time and date at job start Fri Apr 10 2020 14:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 120.00363 * 2 1 4 4 H 1.48500 * 109.47044 * 267.60758 * 3 2 1 5 5 H 1.48497 * 109.47139 * 147.60378 * 3 2 1 6 6 H 1.48497 * 109.46783 * 27.60427 * 3 2 1 7 7 C 1.39943 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00353 * 162.72297 * 7 2 1 9 9 C 1.41401 * 120.00023 * 342.71473 * 7 2 1 10 10 C 1.40710 * 120.24149 * 335.12022 * 9 7 2 11 11 C 1.37617 * 119.74319 * 179.72070 * 10 9 7 12 12 C 1.38637 * 120.24854 * 0.57618 * 11 10 9 13 13 C 1.50695 * 119.75385 * 179.69349 * 12 11 10 14 14 O 1.45198 * 109.47547 * 269.98358 * 13 12 11 15 15 C 1.34225 * 116.99806 * 179.97438 * 14 13 12 16 16 O 1.20823 * 120.00626 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99610 * 179.97438 * 15 14 13 18 18 H 1.08995 * 108.58233 * 316.54858 * 17 15 14 19 19 C 1.53208 * 108.64531 * 74.38136 * 17 15 14 20 20 C 1.55552 * 106.23872 * 148.65735 * 19 17 15 21 21 S 1.83904 * 99.64521 * 323.01109 * 20 19 17 22 22 O 1.42102 * 111.46524 * 284.14430 * 21 20 19 23 23 O 1.42097 * 111.61565 * 144.13051 * 21 20 19 24 24 N 1.46452 * 108.64553 * 198.54929 * 17 15 14 25 25 C 1.38644 * 120.49822 * 359.67926 * 12 11 10 26 26 C 1.37614 * 120.24643 * 0.04165 * 25 12 11 27 27 H 0.97003 * 119.99749 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.12951 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.87825 * 180.27576 * 11 10 9 30 30 H 1.09004 * 109.46969 * 29.98854 * 13 12 11 31 31 H 1.09002 * 109.47458 * 149.98083 * 13 12 11 32 32 H 1.08995 * 110.09796 * 267.85013 * 19 17 15 33 33 H 1.08995 * 110.09858 * 29.46145 * 19 17 15 34 34 H 1.09001 * 111.37155 * 205.40732 * 20 19 17 35 35 H 1.09004 * 111.37150 * 80.61697 * 20 19 17 36 36 H 0.97001 * 126.08765 * 57.20843 * 24 17 15 37 37 H 1.08004 * 119.87253 * 180.02562 * 25 12 11 38 38 H 1.08002 * 120.12578 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.5405 2.0171 -1.3989 5 1 3.5136 1.4552 0.7501 6 1 1.4154 2.6667 0.6487 7 6 2.0079 -1.2120 -0.0005 8 1 3.0514 -1.2331 -0.2783 9 6 1.3488 -2.4090 0.3628 10 6 0.2166 -2.3694 1.1973 11 6 -0.4205 -3.5402 1.5398 12 6 0.0564 -4.7564 1.0755 13 6 -0.6457 -6.0322 1.4631 14 8 -0.0682 -6.5487 2.6911 15 6 -0.5855 -7.6888 3.1753 16 8 -1.4906 -8.2372 2.5922 17 6 -0.0366 -8.2853 4.4457 18 1 1.0516 -8.2330 4.4121 19 6 -0.5274 -7.4487 5.6317 20 6 -0.6672 -8.4316 6.8292 21 16 -1.2830 -9.9177 5.9378 22 8 -2.6536 -9.7831 5.5875 23 8 -0.7660 -11.1164 6.4990 24 7 -0.4359 -9.6928 4.5128 25 6 1.1743 -4.8077 0.2571 26 6 1.8237 -3.6490 -0.1028 27 1 -0.4850 0.8401 0.0004 28 1 -0.1536 -1.4235 1.5643 29 1 -1.2923 -3.5120 2.1766 30 1 -1.7060 -5.8311 1.6167 31 1 -0.5270 -6.7683 0.6680 32 1 0.1993 -6.6714 5.8679 33 1 -1.4937 -7.0009 5.3998 34 1 -1.3973 -8.0727 7.5545 35 1 0.2967 -8.6226 7.3010 36 1 -0.2432 -10.3736 3.8493 37 1 1.5369 -5.7606 -0.0992 38 1 2.6941 -3.6912 -0.7408 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845376195.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:10 Heat of formation + Delta-G solvation = -130.179876 kcal Electronic energy + Delta-G solvation = -24426.686513 eV Core-core repulsion = 20554.296349 eV Total energy + Delta-G solvation = -3872.390164 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.53845 -37.98742 -37.45876 -37.06546 -36.20769 -35.95079 -33.92934 -32.23951 -30.91857 -29.43948 -28.25932 -26.86255 -24.03099 -23.07608 -21.16406 -20.91646 -20.11908 -19.98923 -18.21517 -17.97725 -17.44825 -16.88358 -16.58602 -16.20159 -15.80678 -15.42402 -15.07579 -14.55905 -14.17396 -14.02341 -13.83754 -13.72716 -13.26312 -12.81410 -12.55614 -12.40695 -12.35424 -12.28189 -12.24088 -12.08995 -11.81257 -11.61493 -11.32042 -11.17123 -10.96520 -10.77523 -10.69381 -10.57227 -10.24937 -9.87021 -9.70545 -9.52786 -9.27029 -7.62632 -7.51782 -6.92245 -4.52210 -0.14936 2.02040 2.20320 2.41019 2.87453 2.94832 2.98711 3.02982 3.18752 3.24471 3.43679 3.80866 3.81406 4.04836 4.38291 4.51537 4.60740 4.79549 5.02402 5.03694 5.23609 5.40613 5.54514 5.59548 5.62199 6.00520 6.18489 6.24931 6.64710 6.70380 6.81413 6.92086 7.11808 7.20240 7.45475 7.67129 7.88562 7.89970 7.94360 8.13351 8.47973 8.72873 8.80609 10.01694 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.031548 B = 0.002269 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.315187 B =12337.037390 C =12610.240856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.260 1.260 6 H -0.275 1.275 7 C -0.455 4.455 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.170 4.170 11 C -0.075 4.075 12 C -0.237 4.237 13 C 0.135 3.865 14 O -0.348 6.348 15 C 0.439 3.561 16 O -0.496 6.496 17 C 0.124 3.876 18 H 0.123 0.877 19 C -0.116 4.116 20 C -0.588 4.588 21 S 2.571 3.429 22 O -0.942 6.942 23 O -0.956 6.956 24 N -1.079 6.079 25 C -0.063 4.063 26 C -0.230 4.230 27 H 0.283 0.717 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.440 0.560 37 H 0.089 0.911 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.652 -10.961 12.136 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.183 1.183 6 H -0.200 1.200 7 C -0.484 4.484 8 H 0.098 0.902 9 C 0.116 3.884 10 C -0.190 4.190 11 C -0.093 4.093 12 C -0.239 4.239 13 C 0.063 3.937 14 O -0.264 6.264 15 C 0.278 3.722 16 O -0.383 6.383 17 C 0.013 3.987 18 H 0.140 0.860 19 C -0.155 4.155 20 C -0.719 4.719 21 S 2.664 3.336 22 O -0.931 6.931 23 O -0.945 6.945 24 N -0.845 5.845 25 C -0.081 4.081 26 C -0.250 4.250 27 H 0.094 0.906 28 H 0.138 0.862 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.149 0.851 33 H 0.121 0.879 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.280 0.720 37 H 0.107 0.893 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.513 -11.639 12.195 16.866 hybrid contribution 0.689 1.098 -0.630 1.441 sum 0.176 -10.541 11.565 15.649 Atomic orbital electron populations 1.69817 1.07688 1.29610 1.33897 1.25979 0.94779 1.01581 0.92063 0.86282 0.80603 0.80238 0.79465 1.19317 1.18341 1.19985 1.19676 0.98048 0.91174 1.39523 0.90159 1.17690 0.90814 0.92078 0.87775 1.21300 0.99373 0.96739 1.01542 1.20534 0.98038 0.92548 0.98226 1.18642 1.03227 0.91399 1.10600 1.21774 0.96218 0.93848 0.81812 1.86703 1.59988 1.37153 1.42585 1.23818 0.81348 0.80208 0.86793 1.90686 1.27803 1.60857 1.58943 1.20784 1.03225 0.82031 0.92660 0.85978 1.22366 1.06551 0.98278 0.88332 1.30799 1.14211 1.18379 1.08483 1.06494 0.74921 0.76389 0.75771 1.93693 1.32116 1.86464 1.80791 1.93626 1.80341 1.43024 1.77545 1.54851 1.75707 1.13116 1.40813 1.20385 0.94255 0.96598 0.96899 1.20954 1.03846 0.92809 1.07391 0.90572 0.86241 0.89290 0.91825 0.91992 0.85142 0.87902 0.83483 0.83402 0.71958 0.89324 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.31 10.95 55.55 0.61 -18.70 16 2 C 0.08 1.79 5.15 -17.34 -0.09 1.70 16 3 Si 0.91 17.61 29.59 -169.99 -5.03 12.58 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.46 -11.46 9.06 -37.74 -0.34 -11.80 16 8 H 0.08 1.93 7.90 -52.49 -0.41 1.52 16 9 C 0.12 3.02 5.57 -106.83 -0.60 2.43 16 10 C -0.17 -4.19 8.69 -38.88 -0.34 -4.53 16 11 C -0.07 -1.66 9.67 -39.66 -0.38 -2.04 16 12 C -0.24 -4.97 5.54 -104.33 -0.58 -5.55 16 13 C 0.14 2.42 5.58 36.00 0.20 2.62 16 14 O -0.35 -5.58 10.20 -39.25 -0.40 -5.98 16 15 C 0.44 6.16 6.96 36.01 0.25 6.41 16 16 O -0.50 -8.50 16.24 -18.75 -0.30 -8.81 16 17 C 0.12 1.12 3.66 -69.00 -0.25 0.87 16 18 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 19 C -0.12 -0.77 6.06 -25.27 -0.15 -0.93 16 20 C -0.59 -2.77 7.65 38.51 0.29 -2.48 16 21 S 2.57 23.18 6.47 -107.50 -0.70 22.48 16 22 O -0.94 -12.69 18.14 -57.40 -1.04 -13.73 16 23 O -0.96 -11.11 18.14 -57.40 -1.04 -12.16 16 24 N -1.08 -9.76 6.11 -5.82 -0.04 -9.80 16 25 C -0.06 -1.34 9.67 -39.66 -0.38 -1.73 16 26 C -0.23 -5.38 9.80 -38.88 -0.38 -5.76 16 27 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 28 H 0.12 3.03 6.17 -52.49 -0.32 2.70 16 29 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 31 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 32 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.77 7.82 -51.93 -0.41 0.37 16 34 H 0.15 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.15 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.44 3.58 8.96 -40.36 -0.36 3.22 16 37 H 0.09 1.67 8.06 -52.48 -0.42 1.24 16 38 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 342.28 15.07 5.16 5.16 Total: -1.00 -34.05 342.28 -9.97 -44.02 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -4.44 Total: 5.73 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -2.75 Total: -20.80 kcal Atomic # 7 Polarization: -29.07 SS G_CDS: 0.57 Total: -28.49 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -2.79 Total: -40.68 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Atomic # 16 Polarization: 23.18 SS G_CDS: -0.70 Total: 22.48 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.05 -9.97 -44.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845376195.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.159 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds