Wall clock time and date at job start Fri Apr 10 2020 14:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 120.00363 * 2 1 4 4 H 1.48500 * 109.47044 * 267.60758 * 3 2 1 5 5 H 1.48497 * 109.47139 * 147.60378 * 3 2 1 6 6 H 1.48497 * 109.46783 * 27.60427 * 3 2 1 7 7 C 1.39943 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00353 * 162.72297 * 7 2 1 9 9 C 1.41401 * 120.00023 * 342.71473 * 7 2 1 10 10 C 1.40710 * 120.24149 * 335.12022 * 9 7 2 11 11 C 1.37617 * 119.74319 * 179.72070 * 10 9 7 12 12 C 1.38637 * 120.24854 * 0.57618 * 11 10 9 13 13 C 1.50695 * 119.75385 * 179.69349 * 12 11 10 14 14 O 1.45198 * 109.47547 * 269.98358 * 13 12 11 15 15 C 1.34225 * 116.99806 * 179.97438 * 14 13 12 16 16 O 1.20823 * 120.00626 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99610 * 179.97438 * 15 14 13 18 18 H 1.08995 * 108.58233 * 316.54858 * 17 15 14 19 19 C 1.53208 * 108.64531 * 74.38136 * 17 15 14 20 20 C 1.55552 * 106.23872 * 148.65735 * 19 17 15 21 21 S 1.83904 * 99.64521 * 323.01109 * 20 19 17 22 22 O 1.42102 * 111.46524 * 284.14430 * 21 20 19 23 23 O 1.42097 * 111.61565 * 144.13051 * 21 20 19 24 24 N 1.46452 * 108.64553 * 198.54929 * 17 15 14 25 25 C 1.38644 * 120.49822 * 359.67926 * 12 11 10 26 26 C 1.37614 * 120.24643 * 0.04165 * 25 12 11 27 27 H 0.97003 * 119.99749 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.12951 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.87825 * 180.27576 * 11 10 9 30 30 H 1.09004 * 109.46969 * 29.98854 * 13 12 11 31 31 H 1.09002 * 109.47458 * 149.98083 * 13 12 11 32 32 H 1.08995 * 110.09796 * 267.85013 * 19 17 15 33 33 H 1.08995 * 110.09858 * 29.46145 * 19 17 15 34 34 H 1.09001 * 111.37155 * 205.40732 * 20 19 17 35 35 H 1.09004 * 111.37150 * 80.61697 * 20 19 17 36 36 H 0.97001 * 126.08765 * 57.20843 * 24 17 15 37 37 H 1.08004 * 119.87253 * 180.02562 * 25 12 11 38 38 H 1.08002 * 120.12578 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.5405 2.0171 -1.3989 5 1 3.5136 1.4552 0.7501 6 1 1.4154 2.6667 0.6487 7 6 2.0079 -1.2120 -0.0005 8 1 3.0514 -1.2331 -0.2783 9 6 1.3488 -2.4090 0.3628 10 6 0.2166 -2.3694 1.1973 11 6 -0.4205 -3.5402 1.5398 12 6 0.0564 -4.7564 1.0755 13 6 -0.6457 -6.0322 1.4631 14 8 -0.0682 -6.5487 2.6911 15 6 -0.5855 -7.6888 3.1753 16 8 -1.4906 -8.2372 2.5922 17 6 -0.0366 -8.2853 4.4457 18 1 1.0516 -8.2330 4.4121 19 6 -0.5274 -7.4487 5.6317 20 6 -0.6672 -8.4316 6.8292 21 16 -1.2830 -9.9177 5.9378 22 8 -2.6536 -9.7831 5.5875 23 8 -0.7660 -11.1164 6.4990 24 7 -0.4359 -9.6928 4.5128 25 6 1.1743 -4.8077 0.2571 26 6 1.8237 -3.6490 -0.1028 27 1 -0.4850 0.8401 0.0004 28 1 -0.1536 -1.4235 1.5643 29 1 -1.2923 -3.5120 2.1766 30 1 -1.7060 -5.8311 1.6167 31 1 -0.5270 -6.7683 0.6680 32 1 0.1993 -6.6714 5.8679 33 1 -1.4937 -7.0009 5.3998 34 1 -1.3973 -8.0727 7.5545 35 1 0.2967 -8.6226 7.3010 36 1 -0.2432 -10.3736 3.8493 37 1 1.5369 -5.7606 -0.0992 38 1 2.6941 -3.6912 -0.7408 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845376195.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:10 Heat of formation + Delta-G solvation = -154.691046 kcal Electronic energy + Delta-G solvation = -24427.749397 eV Core-core repulsion = 20554.296349 eV Total energy + Delta-G solvation = -3873.453048 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.68804 -39.55176 -38.40038 -37.99773 -37.19355 -36.95407 -35.67145 -32.84324 -32.59438 -31.21696 -29.45532 -28.13015 -25.55371 -23.86772 -22.93903 -22.03182 -21.73865 -20.68283 -19.25863 -19.06934 -18.88884 -17.81124 -17.62529 -17.29838 -17.09914 -16.70800 -16.02851 -15.81143 -15.63402 -15.46549 -14.79642 -14.50120 -14.31633 -14.14139 -13.91236 -13.84585 -13.48146 -13.31601 -13.24807 -13.12085 -13.03758 -12.97247 -12.76882 -12.44578 -12.39342 -12.22140 -11.78463 -11.67745 -11.50618 -11.46553 -11.27809 -11.03054 -10.62260 -9.41821 -9.31645 -8.67930 -6.38503 -0.79265 0.73009 1.07968 1.12844 1.36741 1.40682 1.50209 1.55269 1.93504 2.20463 2.58337 2.71072 2.81958 3.22856 3.47473 3.60590 3.78250 3.97002 4.09282 4.10981 4.18111 4.33116 4.49923 4.54068 4.57376 4.63369 4.79867 4.93445 5.02559 5.13188 5.31963 5.40508 5.48461 5.66662 5.89867 5.96696 6.07172 6.15768 6.33721 6.65861 6.71101 6.90060 6.98523 8.28751 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.031548 B = 0.002269 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.315187 B =12337.037390 C =12610.240856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.036 3.964 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.257 1.257 6 H -0.266 1.266 7 C -0.493 4.493 8 H 0.079 0.921 9 C 0.088 3.912 10 C -0.192 4.192 11 C -0.078 4.078 12 C -0.228 4.228 13 C 0.140 3.860 14 O -0.350 6.350 15 C 0.437 3.563 16 O -0.532 6.532 17 C 0.126 3.874 18 H 0.159 0.841 19 C -0.123 4.123 20 C -0.540 4.540 21 S 2.559 3.441 22 O -0.999 6.999 23 O -0.989 6.989 24 N -1.081 6.081 25 C -0.065 4.065 26 C -0.245 4.245 27 H 0.290 0.710 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.163 0.837 33 H 0.092 0.908 34 H 0.177 0.823 35 H 0.186 0.814 36 H 0.441 0.559 37 H 0.117 0.883 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.960 -10.799 13.958 17.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.181 1.181 6 H -0.191 1.191 7 C -0.522 4.522 8 H 0.097 0.903 9 C 0.085 3.915 10 C -0.212 4.212 11 C -0.097 4.097 12 C -0.229 4.229 13 C 0.067 3.933 14 O -0.266 6.266 15 C 0.279 3.721 16 O -0.421 6.421 17 C 0.016 3.984 18 H 0.177 0.823 19 C -0.162 4.162 20 C -0.675 4.675 21 S 2.658 3.342 22 O -0.988 6.988 23 O -0.979 6.979 24 N -0.846 5.846 25 C -0.083 4.083 26 C -0.265 4.265 27 H 0.101 0.899 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.181 0.819 33 H 0.111 0.889 34 H 0.194 0.806 35 H 0.204 0.796 36 H 0.281 0.719 37 H 0.135 0.865 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.778 -11.541 14.003 18.163 hybrid contribution 0.244 0.900 -1.149 1.480 sum 1.022 -10.641 12.854 16.718 Atomic orbital electron populations 1.69865 1.09077 1.30852 1.34698 1.26804 0.95496 1.04666 0.91069 0.85194 0.79143 0.75722 0.79597 1.18745 1.18080 1.19051 1.19919 0.98330 0.92358 1.41586 0.90259 1.18041 0.91641 0.93144 0.88624 1.21270 1.00216 0.97044 1.02651 1.20770 0.98372 0.92327 0.98216 1.18941 1.02449 0.92310 1.09201 1.21528 0.95887 0.92735 0.83130 1.86662 1.59986 1.38341 1.41579 1.24925 0.80507 0.78917 0.87766 1.90682 1.29526 1.61552 1.60378 1.21192 1.04999 0.81513 0.90724 0.82337 1.22577 1.07048 0.98823 0.87752 1.30651 1.16516 1.12726 1.07614 1.06628 0.73848 0.77690 0.76009 1.93625 1.35614 1.87648 1.81945 1.93580 1.80336 1.46116 1.77834 1.54876 1.75271 1.13310 1.41143 1.20694 0.94036 0.97167 0.96396 1.21160 1.04500 0.92998 1.07797 0.89904 0.87801 0.87388 0.91652 0.91293 0.81909 0.88949 0.80551 0.79616 0.71886 0.86492 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.23 10.95 21.83 0.24 -40.99 16 2 C 0.04 1.71 5.15 85.26 0.44 2.15 16 3 Si 0.98 36.26 29.59 68.60 2.03 38.29 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 6 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 7 C -0.49 -25.49 9.06 23.46 0.21 -25.28 16 8 H 0.08 3.93 7.90 -2.91 -0.02 3.90 16 9 C 0.09 4.57 5.57 -21.29 -0.12 4.45 16 10 C -0.19 -9.69 8.69 22.73 0.20 -9.49 16 11 C -0.08 -3.45 9.67 22.22 0.21 -3.24 16 12 C -0.23 -9.25 5.54 -19.67 -0.11 -9.36 16 13 C 0.14 4.77 5.58 71.23 0.40 5.17 16 14 O -0.35 -10.39 10.20 -51.37 -0.52 -10.91 16 15 C 0.44 11.41 6.96 71.24 0.50 11.90 16 16 O -0.53 -17.89 16.24 21.97 0.36 -17.54 16 17 C 0.13 1.88 3.66 44.33 0.16 2.04 16 18 H 0.16 1.29 8.14 -2.39 -0.02 1.27 16 19 C -0.12 -1.11 6.06 31.54 0.19 -0.92 16 20 C -0.54 -2.51 7.65 72.86 0.56 -1.95 16 21 S 2.56 42.80 6.47 -56.49 -0.37 42.44 16 22 O -1.00 -27.28 18.14 -127.79 -2.32 -29.60 16 23 O -0.99 -22.26 18.14 -127.79 -2.32 -24.58 16 24 N -1.08 -17.84 6.11 -172.31 -1.05 -18.89 16 25 C -0.06 -2.69 9.67 22.22 0.21 -2.47 16 26 C -0.25 -11.49 9.80 22.73 0.22 -11.27 16 27 H 0.29 13.14 8.30 -92.71 -0.77 12.37 16 28 H 0.10 5.47 6.17 -2.91 -0.02 5.45 16 29 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 30 H 0.07 2.21 8.07 -2.38 -0.02 2.19 16 31 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 32 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 1.11 7.82 -2.39 -0.02 1.09 16 34 H 0.18 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.19 -0.33 8.14 -2.38 -0.02 -0.35 16 36 H 0.44 6.89 8.96 -93.00 -0.83 6.05 16 37 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 38 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -77.80 342.28 -0.60 -78.40 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.27 Total: 21.64 kcal Atomic # 6 Polarization: -41.35 SS G_CDS: 3.08 Total: -38.27 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.81 Total: -59.88 kcal Atomic # 8 Polarization: -77.82 SS G_CDS: -4.80 Total: -82.62 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Atomic # 16 Polarization: 42.80 SS G_CDS: -0.37 Total: 42.44 kcal Total: -77.80 -0.60 -78.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845376195.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.288 kcal (2) G-P(sol) polarization free energy of solvation -77.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds