Wall clock time and date at job start Fri Apr 10 2020 14:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86801 * 120.00133 * 2 1 4 4 H 1.48504 * 109.47171 * 270.00184 * 3 2 1 5 5 H 1.48504 * 109.46883 * 29.99925 * 3 2 1 6 6 H 1.48494 * 109.47233 * 150.00172 * 3 2 1 7 7 C 1.39943 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00016 * 197.84693 * 7 2 1 9 9 C 1.41392 * 120.00313 * 17.84457 * 7 2 1 10 10 C 1.40716 * 120.24380 * 204.38924 * 9 7 2 11 11 C 1.37626 * 119.74432 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24582 * 359.97215 * 11 10 9 13 13 C 1.50691 * 119.74648 * 180.02562 * 12 11 10 14 14 O 1.45205 * 109.47432 * 90.00123 * 13 12 11 15 15 C 1.34222 * 117.00558 * 180.02562 * 14 13 12 16 16 O 1.20829 * 119.99720 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00379 * 180.02562 * 15 14 13 18 18 H 1.09004 * 108.43181 * 43.53819 * 17 15 14 19 19 C 1.53199 * 108.64547 * 285.62308 * 17 15 14 20 20 C 1.55560 * 106.24200 * 211.33565 * 19 17 15 21 21 S 1.83903 * 99.63628 * 36.98820 * 20 19 17 22 22 O 1.42099 * 111.46776 * 215.90718 * 21 20 19 23 23 O 1.42108 * 111.46483 * 75.85795 * 21 20 19 24 24 N 1.46450 * 108.64812 * 161.45108 * 17 15 14 25 25 C 1.38634 * 120.50082 * 0.30001 * 12 11 10 26 26 C 1.37620 * 120.24886 * 359.44472 * 25 12 11 27 27 H 0.97006 * 120.00034 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.13051 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.87483 * 179.97438 * 11 10 9 30 30 H 1.09002 * 109.47183 * 329.99992 * 13 12 11 31 31 H 1.08997 * 109.47369 * 210.00243 * 13 12 11 32 32 H 1.08999 * 110.10342 * 330.53387 * 19 17 15 33 33 H 1.09005 * 110.10180 * 92.08177 * 19 17 15 34 34 H 1.08995 * 111.36974 * 279.39044 * 20 19 17 35 35 H 1.09002 * 111.36733 * 154.58942 * 20 19 17 36 36 H 0.96994 * 126.08309 * 302.85775 * 24 17 15 37 37 H 1.07998 * 119.87423 * 179.70347 * 25 12 11 38 38 H 1.07997 * 120.12836 * 180.27133 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6527 0.7001 6 1 3.5397 1.4402 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0489 -1.2346 0.2861 9 6 1.3520 -2.4069 -0.3763 10 6 1.8257 -3.6499 0.0825 11 6 1.1797 -4.8066 -0.2900 12 6 0.0659 -4.7502 -1.1136 13 6 -0.6331 -6.0236 -1.5141 14 8 -1.6663 -6.3349 -0.5425 15 6 -2.3872 -7.4471 -0.7544 16 8 -2.1626 -8.1376 -1.7202 17 6 -3.4773 -7.8340 0.2114 18 1 -4.0451 -6.9392 0.4668 19 6 -2.8297 -8.3837 1.4864 20 6 -3.8151 -9.4466 2.0514 21 16 -4.4169 -10.1774 0.4747 22 8 -5.7901 -10.5334 0.5573 23 8 -3.4477 -11.0428 -0.1007 24 7 -4.3737 -8.7843 -0.4505 25 6 -0.4062 -3.5315 -1.5761 26 6 0.2209 -2.3618 -1.2121 27 1 -0.4850 0.8401 0.0004 28 1 2.6934 -3.6961 0.7239 29 1 1.5418 -5.7618 0.0606 30 1 0.0895 -6.8390 -1.5498 31 1 -1.0857 -5.8960 -2.4974 32 1 -1.8725 -8.8484 1.2500 33 1 -2.6875 -7.5812 2.2103 34 1 -4.6273 -8.9791 2.6079 35 1 -3.2949 -10.1869 2.6592 36 1 -4.8562 -8.6331 -1.2782 37 1 -1.2718 -3.4997 -2.2211 38 1 -0.1512 -1.4132 -1.5700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845376196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:13 Heat of formation + Delta-G solvation = -130.258667 kcal Electronic energy + Delta-G solvation = -24454.089684 eV Core-core repulsion = 20581.696103 eV Total energy + Delta-G solvation = -3872.393581 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52301 -37.97975 -37.45145 -37.05500 -36.19155 -35.93484 -33.93421 -32.22332 -30.91894 -29.43914 -28.24795 -26.85868 -24.02612 -23.06597 -21.15664 -20.90952 -20.11731 -19.97427 -18.20307 -17.95783 -17.45200 -16.86873 -16.56254 -16.19205 -15.83473 -15.38081 -15.05816 -14.57582 -14.17726 -14.01459 -13.81518 -13.71218 -13.23822 -12.84394 -12.50328 -12.38877 -12.33983 -12.27214 -12.20859 -12.08790 -11.83595 -11.75114 -11.24753 -11.05849 -10.97005 -10.90434 -10.64896 -10.49522 -10.24863 -9.88137 -9.68826 -9.52511 -9.28315 -7.62995 -7.51813 -6.92598 -4.52552 -0.13267 2.03375 2.21945 2.41655 2.87831 2.94779 2.99400 3.01932 3.19682 3.25131 3.45173 3.80956 3.82815 4.06554 4.38271 4.52953 4.62432 4.81563 5.04337 5.05798 5.25578 5.42447 5.54751 5.58845 5.62447 5.99792 6.18106 6.24815 6.66483 6.71783 6.81361 6.91789 7.11860 7.20182 7.45328 7.67152 7.89895 7.90072 7.94502 8.13133 8.47978 8.72636 8.80514 10.01048 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.032061 B = 0.002279 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.121225 B =12284.316631 C =12455.906541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.063 4.063 12 C -0.238 4.238 13 C 0.136 3.864 14 O -0.347 6.347 15 C 0.439 3.561 16 O -0.497 6.497 17 C 0.123 3.877 18 H 0.123 0.877 19 C -0.116 4.116 20 C -0.588 4.588 21 S 2.571 3.429 22 O -0.956 6.956 23 O -0.942 6.942 24 N -1.079 6.079 25 C -0.075 4.075 26 C -0.171 4.171 27 H 0.283 0.717 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.130 0.870 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.440 0.560 37 H 0.088 0.912 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.947 -11.374 4.531 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.484 4.484 8 H 0.099 0.901 9 C 0.116 3.884 10 C -0.250 4.250 11 C -0.081 4.081 12 C -0.239 4.239 13 C 0.064 3.936 14 O -0.263 6.263 15 C 0.279 3.721 16 O -0.384 6.384 17 C 0.013 3.987 18 H 0.141 0.859 19 C -0.155 4.155 20 C -0.719 4.719 21 S 2.665 3.335 22 O -0.945 6.945 23 O -0.931 6.931 24 N -0.845 5.845 25 C -0.094 4.094 26 C -0.190 4.190 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.149 0.851 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.280 0.720 37 H 0.107 0.893 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.297 -12.354 4.013 15.413 hybrid contribution 0.418 1.483 -0.141 1.547 sum -7.879 -10.871 3.873 13.973 Atomic orbital electron populations 1.69820 1.07688 1.29586 1.33753 1.25976 0.94775 1.01579 0.92096 0.86262 0.80508 0.80245 0.79478 1.19126 1.20184 1.18488 1.19701 0.98269 0.91240 1.39181 0.90112 1.17691 0.90788 0.92096 0.87849 1.20969 1.04129 0.92671 1.07211 1.20391 0.95070 0.96641 0.96032 1.18655 1.01321 0.91874 1.12061 1.21783 0.86429 0.96081 0.89338 1.86722 1.46059 1.40393 1.53157 1.23828 0.82468 0.79850 0.85986 1.90682 1.66406 1.51930 1.29395 1.20789 0.90204 0.96814 0.90941 0.85925 1.22360 0.98622 1.00383 0.94131 1.30800 1.10645 1.10781 1.19648 1.06476 0.75033 0.73720 0.78309 1.93628 1.32852 1.81946 1.86106 1.93693 1.62615 1.63125 1.73667 1.54842 1.57869 1.33084 1.38678 1.20536 0.97686 0.92465 0.98685 1.21298 0.99692 0.96674 1.01321 0.90584 0.88695 0.89272 0.91928 0.91953 0.87943 0.85129 0.83388 0.83502 0.71956 0.89348 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.18 10.95 55.55 0.61 -18.57 16 2 C 0.07 1.78 5.14 -17.35 -0.09 1.69 16 3 Si 0.91 17.64 29.60 -169.99 -5.03 12.61 16 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.46 -11.44 9.05 -37.74 -0.34 -11.78 16 8 H 0.08 1.95 7.91 -52.48 -0.42 1.53 16 9 C 0.12 3.00 5.57 -106.83 -0.60 2.41 16 10 C -0.23 -5.35 9.80 -38.87 -0.38 -5.73 16 11 C -0.06 -1.34 9.67 -39.66 -0.38 -1.72 16 12 C -0.24 -4.98 5.54 -104.33 -0.58 -5.56 16 13 C 0.14 2.43 5.58 36.00 0.20 2.63 16 14 O -0.35 -5.71 10.20 -39.24 -0.40 -6.11 16 15 C 0.44 6.29 6.96 36.00 0.25 6.54 16 16 O -0.50 -8.57 16.24 -18.75 -0.30 -8.88 16 17 C 0.12 1.16 3.66 -69.01 -0.25 0.91 16 18 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 19 C -0.12 -0.80 6.06 -25.27 -0.15 -0.96 16 20 C -0.59 -2.91 7.66 38.52 0.29 -2.61 16 21 S 2.57 23.62 6.47 -107.50 -0.70 22.92 16 22 O -0.96 -11.30 18.14 -57.37 -1.04 -12.34 16 23 O -0.94 -12.74 18.14 -57.37 -1.04 -13.78 16 24 N -1.08 -10.07 6.11 -5.82 -0.04 -10.11 16 25 C -0.08 -1.67 9.67 -39.66 -0.38 -2.06 16 26 C -0.17 -4.22 8.70 -38.87 -0.34 -4.55 16 27 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 28 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 31 H 0.06 1.08 8.07 -51.93 -0.42 0.67 16 32 H 0.10 0.78 7.82 -51.93 -0.41 0.37 16 33 H 0.13 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.15 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.15 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.44 3.72 8.96 -40.36 -0.36 3.36 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.12 3.04 6.16 -52.49 -0.32 2.72 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -33.95 342.27 -9.97 -43.92 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.44 Total: 5.98 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -2.75 Total: -20.80 kcal Atomic # 7 Polarization: -29.25 SS G_CDS: 0.57 Total: -28.68 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -2.79 Total: -41.10 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Atomic # 16 Polarization: 23.62 SS G_CDS: -0.70 Total: 22.92 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.95 -9.97 -43.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845376196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.340 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds