Wall clock time and date at job start Fri Apr 10 2020 14:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39034 * 120.34319 * 2 1 4 4 C 1.43200 * 120.78847 * 0.04687 * 3 2 1 5 5 N 3.49038 * 81.14224 * 0.03128 * 2 1 3 6 6 C 1.46811 * 118.41998 * 180.02562 * 3 2 1 7 7 N 1.31948 * 131.66802 * 180.02562 * 6 3 2 8 8 C 1.34859 * 109.73166 * 179.97438 * 7 6 3 9 9 C 1.39993 * 133.20783 * 180.02562 * 8 7 6 10 10 C 1.36546 * 119.88928 * 179.97438 * 9 8 7 11 11 C 1.38808 * 120.68261 * 0.02562 * 10 9 8 12 12 C 1.37902 * 120.46763 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.73698 * 359.95657 * 12 11 10 14 14 N 1.37327 * 118.84774 * 0.02562 * 6 3 2 15 15 C 1.36191 * 120.52542 * 359.74446 * 14 6 3 16 16 Cl 1.73604 * 119.09351 * 180.27331 * 15 14 6 17 17 C 1.35405 * 121.80850 * 0.52732 * 15 14 6 18 18 C 1.50700 * 119.45870 * 179.75316 * 17 15 14 19 19 C 1.50702 * 109.46869 * 269.72006 * 18 17 15 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48504 * 109.47196 * 60.00645 * 23 21 19 25 25 H 1.48504 * 109.46887 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47679 * 300.00280 * 23 21 19 27 27 H 1.09005 * 109.46780 * 269.97386 * 1 2 3 28 28 H 1.08999 * 109.47418 * 29.97082 * 1 2 3 29 29 H 1.08995 * 109.47471 * 149.97778 * 1 2 3 30 30 H 1.07995 * 120.05425 * 359.97364 * 9 8 7 31 31 H 1.08004 * 119.65864 * 179.97438 * 10 9 8 32 32 H 1.07998 * 119.76887 * 179.97438 * 11 10 9 33 33 H 1.07998 * 120.12835 * 179.97438 * 12 11 10 34 34 H 1.09004 * 109.47210 * 149.72299 * 18 17 15 35 35 H 1.08994 * 109.47551 * 29.71951 * 18 17 15 36 36 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2093 1.1999 0.0000 4 6 1.5180 2.4539 0.0010 5 7 0.9695 3.4488 0.0019 6 6 3.6766 1.1506 -0.0006 7 7 4.5864 2.1063 -0.0003 8 6 5.8197 1.5608 -0.0005 9 6 7.1090 2.1063 0.0001 10 6 8.1970 1.2811 0.0001 11 6 8.0399 -0.0980 -0.0010 12 6 6.7799 -0.6583 -0.0026 13 6 5.6611 0.1632 -0.0023 14 7 4.2985 -0.0738 -0.0016 15 6 3.5657 -1.2218 0.0031 16 17 4.3903 -2.7495 0.0088 17 6 2.2118 -1.2043 -0.0016 18 6 1.4538 -2.5068 -0.0017 19 6 1.2000 -2.9402 -1.4225 20 1 1.5528 -2.3335 -2.2434 21 6 0.5230 -4.1146 -1.6746 22 7 0.0938 -4.8537 -0.6750 23 14 0.2152 -4.6558 -3.4357 24 1 1.5142 -4.8339 -4.1330 25 1 -0.5275 -5.9417 -3.4358 26 1 -0.5861 -3.6218 -4.1386 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5141 30 1 7.2429 3.1779 0.0005 31 1 9.1899 1.7060 0.0001 32 1 8.9107 -0.7369 -0.0014 33 1 6.6641 -1.7321 -0.0039 34 1 0.5021 -2.3734 0.5129 35 1 2.0405 -3.2687 0.5113 36 1 -0.3829 -5.6797 -0.8523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002362956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:13 Heat of formation + Delta-G solvation = 119.968440 kcal Electronic energy + Delta-G solvation = -24019.824228 eV Core-core repulsion = 20495.839273 eV Total energy + Delta-G solvation = -3523.984955 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.74419 -39.03457 -37.04370 -36.89378 -36.04984 -34.15918 -33.29258 -31.36206 -30.79973 -29.67237 -27.64564 -27.06582 -24.38817 -23.19931 -22.80605 -21.94978 -21.11095 -18.65412 -17.64004 -17.46224 -16.72354 -16.66849 -16.07391 -15.25661 -14.87689 -14.57156 -14.47215 -13.99142 -13.89863 -13.32122 -13.24900 -12.96219 -12.72395 -12.68927 -12.34754 -12.17274 -12.03858 -11.87518 -11.78934 -11.65465 -11.38152 -11.05151 -10.96747 -10.87512 -10.45266 -10.28170 -10.01317 -9.96270 -9.57247 -8.94644 -8.61818 -8.36700 -7.39871 -6.25814 -4.31807 0.14740 0.75397 1.40949 1.56788 2.21197 2.34926 2.85130 2.87863 3.20060 3.25762 3.28981 3.67364 3.74175 3.84024 3.89798 4.27123 4.44390 4.63810 4.90676 4.90848 5.09640 5.15945 5.21710 5.31293 5.36989 5.50309 5.64471 5.74501 5.78698 6.02832 6.09219 6.22914 6.33092 6.41293 6.43390 6.54835 6.75864 6.90791 7.19273 7.25901 7.59858 7.67194 7.73547 7.97625 8.70975 9.34014 10.83211 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.005001 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.524468 B = 5597.618526 C = 7239.755640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.073 3.927 3 C -0.057 4.057 4 C 0.285 3.715 5 N -0.415 5.415 6 C 0.333 3.667 7 N -0.501 5.501 8 C 0.099 3.901 9 C -0.086 4.086 10 C -0.105 4.105 11 C -0.125 4.125 12 C -0.079 4.079 13 C 0.008 3.992 14 N -0.388 5.388 15 C 0.159 3.841 16 Cl 0.006 6.994 17 C -0.070 4.070 18 C 0.055 3.945 19 C -0.519 4.519 20 H 0.058 0.942 21 C 0.069 3.931 22 N -0.886 5.886 23 Si 0.892 3.108 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.702 5.359 2.971 12.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.064 3.936 3 C -0.064 4.064 4 C -0.030 4.030 5 N -0.091 5.091 6 C 0.082 3.918 7 N -0.222 5.222 8 C -0.023 4.023 9 C -0.105 4.105 10 C -0.125 4.125 11 C -0.145 4.145 12 C -0.099 4.099 13 C -0.097 4.097 14 N -0.067 5.067 15 C 0.029 3.971 16 Cl 0.035 6.965 17 C -0.075 4.075 18 C 0.018 3.982 19 C -0.557 4.557 20 H 0.076 0.924 21 C -0.134 4.134 22 N -0.524 5.524 23 Si 0.720 3.280 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.200 1.200 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.134 0.866 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.801 7.419 3.017 12.657 hybrid contribution 0.453 -1.802 -1.033 2.126 sum 10.254 5.617 1.984 11.859 Atomic orbital electron populations 1.21165 0.87880 1.05689 1.04048 1.20374 0.97759 0.88951 0.86548 1.15629 0.85393 0.88090 1.17284 1.24510 0.93083 0.91828 0.93556 1.81189 1.08859 1.09532 1.09552 1.21452 0.92410 0.78749 0.99211 1.70635 0.97246 1.27552 1.26775 1.18917 0.92839 0.88649 1.01845 1.20004 0.88304 1.00286 1.01940 1.20691 0.98401 0.93333 1.00097 1.20875 0.95912 0.95140 1.02558 1.20299 0.89663 0.99272 1.00675 1.18794 0.81759 0.96851 1.12307 1.42484 1.05976 1.06112 1.52172 1.20989 0.90001 0.80613 1.05507 1.98427 1.77980 1.23963 1.96103 1.19928 0.88923 0.99496 0.99133 1.18559 0.95246 0.85273 0.99158 1.20828 1.37409 1.06994 0.90461 0.92362 1.24898 0.95205 0.96112 0.97199 1.69914 1.37450 1.14207 1.30802 0.86636 0.78623 0.78115 0.84656 1.20092 1.21111 1.19965 0.89102 0.91036 0.86569 0.85065 0.85195 0.85049 0.85376 0.93357 0.93362 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.82 36.00 0.32 -1.54 16 2 C 0.07 1.18 5.95 -103.84 -0.62 0.56 16 3 C -0.06 -0.94 5.94 -104.21 -0.62 -1.56 16 4 C 0.29 4.76 13.97 -22.47 -0.31 4.44 16 5 N -0.42 -7.28 18.54 41.84 0.78 -6.50 16 6 C 0.33 5.95 7.74 -153.88 -1.19 4.76 16 7 N -0.50 -9.12 11.31 -8.86 -0.10 -9.22 16 8 C 0.10 1.61 7.19 -84.97 -0.61 1.00 16 9 C -0.09 -1.09 10.06 -39.54 -0.40 -1.49 16 10 C -0.11 -1.08 9.96 -39.98 -0.40 -1.48 16 11 C -0.12 -1.34 10.03 -39.49 -0.40 -1.73 16 12 C -0.08 -1.06 9.62 -39.50 -0.38 -1.44 16 13 C 0.01 0.13 6.88 -83.82 -0.58 -0.44 16 14 N -0.39 -6.76 2.98 -55.39 -0.17 -6.93 16 15 C 0.16 2.80 7.22 -16.63 -0.12 2.68 16 16 Cl 0.01 0.10 24.69 -51.86 -1.28 -1.18 16 17 C -0.07 -1.26 5.02 -105.15 -0.53 -1.79 16 18 C 0.05 1.13 3.95 -29.03 -0.11 1.02 16 19 C -0.52 -12.11 8.70 -34.44 -0.30 -12.41 16 20 H 0.06 1.38 7.74 -52.49 -0.41 0.97 16 21 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -22.81 13.29 55.43 0.74 -22.08 16 23 Si 0.89 19.40 29.54 -169.99 -5.02 14.38 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 27 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.07 0.94 7.14 -51.93 -0.37 0.57 16 29 H 0.12 1.83 6.40 -51.93 -0.33 1.50 16 30 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 31 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.13 1.62 6.27 -52.49 -0.33 1.29 16 34 H 0.05 1.01 6.70 -51.93 -0.35 0.66 16 35 H 0.05 1.06 6.69 -51.93 -0.35 0.71 16 36 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 329.73 15.07 4.97 4.97 Total: -1.00 -27.22 329.73 -9.39 -36.61 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -2.96 Total: -2.22 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -6.34 Total: -7.83 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 1.25 Total: -44.72 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -1.28 Total: -1.18 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.22 -9.39 -36.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002362956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.581 kcal (2) G-P(sol) polarization free energy of solvation -27.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds