Wall clock time and date at job start Fri Apr 10 2020 14:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39034 * 120.34319 * 2 1 4 4 C 1.43200 * 120.78847 * 0.04687 * 3 2 1 5 5 N 3.49038 * 81.14224 * 0.03128 * 2 1 3 6 6 C 1.46811 * 118.41998 * 180.02562 * 3 2 1 7 7 N 1.31948 * 131.66802 * 180.02562 * 6 3 2 8 8 C 1.34859 * 109.73166 * 179.97438 * 7 6 3 9 9 C 1.39993 * 133.20783 * 180.02562 * 8 7 6 10 10 C 1.36546 * 119.88928 * 179.97438 * 9 8 7 11 11 C 1.38808 * 120.68261 * 0.02562 * 10 9 8 12 12 C 1.37902 * 120.46763 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.73698 * 359.95657 * 12 11 10 14 14 N 1.37327 * 118.84774 * 0.02562 * 6 3 2 15 15 C 1.36191 * 120.52542 * 359.74446 * 14 6 3 16 16 Cl 1.73604 * 119.09351 * 180.27331 * 15 14 6 17 17 C 1.35405 * 121.80850 * 0.52732 * 15 14 6 18 18 C 1.50700 * 119.45870 * 179.75316 * 17 15 14 19 19 C 1.50702 * 109.46869 * 269.72006 * 18 17 15 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48504 * 109.47196 * 60.00645 * 23 21 19 25 25 H 1.48504 * 109.46887 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47679 * 300.00280 * 23 21 19 27 27 H 1.09005 * 109.46780 * 269.97386 * 1 2 3 28 28 H 1.08999 * 109.47418 * 29.97082 * 1 2 3 29 29 H 1.08995 * 109.47471 * 149.97778 * 1 2 3 30 30 H 1.07995 * 120.05425 * 359.97364 * 9 8 7 31 31 H 1.08004 * 119.65864 * 179.97438 * 10 9 8 32 32 H 1.07998 * 119.76887 * 179.97438 * 11 10 9 33 33 H 1.07998 * 120.12835 * 179.97438 * 12 11 10 34 34 H 1.09004 * 109.47210 * 149.72299 * 18 17 15 35 35 H 1.08994 * 109.47551 * 29.71951 * 18 17 15 36 36 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2093 1.1999 0.0000 4 6 1.5180 2.4539 0.0010 5 7 0.9695 3.4488 0.0019 6 6 3.6766 1.1506 -0.0006 7 7 4.5864 2.1063 -0.0003 8 6 5.8197 1.5608 -0.0005 9 6 7.1090 2.1063 0.0001 10 6 8.1970 1.2811 0.0001 11 6 8.0399 -0.0980 -0.0010 12 6 6.7799 -0.6583 -0.0026 13 6 5.6611 0.1632 -0.0023 14 7 4.2985 -0.0738 -0.0016 15 6 3.5657 -1.2218 0.0031 16 17 4.3903 -2.7495 0.0088 17 6 2.2118 -1.2043 -0.0016 18 6 1.4538 -2.5068 -0.0017 19 6 1.2000 -2.9402 -1.4225 20 1 1.5528 -2.3335 -2.2434 21 6 0.5230 -4.1146 -1.6746 22 7 0.0938 -4.8537 -0.6750 23 14 0.2152 -4.6558 -3.4357 24 1 1.5142 -4.8339 -4.1330 25 1 -0.5275 -5.9417 -3.4358 26 1 -0.5861 -3.6218 -4.1386 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5141 30 1 7.2429 3.1779 0.0005 31 1 9.1899 1.7060 0.0001 32 1 8.9107 -0.7369 -0.0014 33 1 6.6641 -1.7321 -0.0039 34 1 0.5021 -2.3734 0.5129 35 1 2.0405 -3.2687 0.5113 36 1 -0.3829 -5.6797 -0.8523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002362956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:12 Heat of formation + Delta-G solvation = 108.964365 kcal Electronic energy + Delta-G solvation = -24020.301400 eV Core-core repulsion = 20495.839273 eV Total energy + Delta-G solvation = -3524.462127 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.96176 -40.25978 -38.35091 -38.05754 -37.39428 -35.48375 -34.95667 -32.80600 -31.92060 -30.83211 -28.87535 -28.53677 -25.80831 -24.69624 -23.92973 -23.13282 -22.35959 -19.92366 -18.93669 -18.61158 -18.46369 -17.82796 -17.42665 -16.59636 -16.43146 -15.67242 -15.59871 -15.18195 -15.03097 -14.70330 -14.66398 -14.37474 -14.15512 -13.91018 -13.89316 -13.43349 -13.13637 -13.04669 -12.97455 -12.95616 -12.77890 -12.60551 -12.43924 -12.30863 -11.93115 -11.79082 -11.61985 -11.21990 -11.07749 -10.48869 -10.11692 -9.52412 -8.63560 -8.12184 -6.21827 -1.13629 -0.39961 0.22427 0.36036 1.01975 1.07587 1.46817 1.49429 1.52931 1.54874 1.57854 2.37418 2.48770 2.50603 2.62225 2.79304 3.22040 3.23559 3.38494 3.83590 3.91970 3.98911 4.12301 4.20085 4.30558 4.39205 4.53843 4.68143 4.74141 4.83444 4.91611 4.97936 5.27749 5.32565 5.41318 5.47636 5.49029 5.57944 5.66968 5.80708 5.83739 6.17851 6.27265 6.51012 6.86235 7.45695 8.95722 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.005001 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.524468 B = 5597.618526 C = 7239.755640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.078 3.922 3 C -0.058 4.058 4 C 0.298 3.702 5 N -0.431 5.431 6 C 0.313 3.687 7 N -0.521 5.521 8 C 0.068 3.932 9 C -0.094 4.094 10 C -0.088 4.088 11 C -0.103 4.103 12 C -0.101 4.101 13 C -0.010 4.010 14 N -0.394 5.394 15 C 0.163 3.837 16 Cl 0.011 6.989 17 C -0.085 4.085 18 C 0.065 3.935 19 C -0.516 4.516 20 H 0.052 0.948 21 C 0.028 3.972 22 N -0.916 5.916 23 Si 0.940 3.060 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.270 1.270 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.147 0.853 31 H 0.175 0.825 32 H 0.171 0.829 33 H 0.131 0.869 34 H 0.044 0.956 35 H 0.034 0.966 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.079 5.934 2.675 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.069 3.931 3 C -0.065 4.065 4 C -0.017 4.017 5 N -0.107 5.107 6 C 0.061 3.939 7 N -0.243 5.243 8 C -0.052 4.052 9 C -0.114 4.114 10 C -0.108 4.108 11 C -0.123 4.123 12 C -0.121 4.121 13 C -0.115 4.115 14 N -0.074 5.074 15 C 0.032 3.968 16 Cl 0.040 6.960 17 C -0.090 4.090 18 C 0.028 3.972 19 C -0.554 4.554 20 H 0.070 0.930 21 C -0.172 4.172 22 N -0.555 5.555 23 Si 0.766 3.234 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.195 1.195 27 H 0.130 0.870 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.165 0.835 31 H 0.192 0.808 32 H 0.189 0.811 33 H 0.149 0.851 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.205 8.014 2.715 14.851 hybrid contribution -0.007 -1.933 -0.917 2.139 sum 12.198 6.081 1.798 13.747 Atomic orbital electron populations 1.21176 0.86492 1.05315 1.05319 1.20427 0.98553 0.88178 0.85905 1.15551 0.85163 0.88009 1.17794 1.24437 0.92613 0.91606 0.93020 1.81191 1.09425 1.09826 1.10271 1.21610 0.92801 0.79112 1.00369 1.70568 0.98340 1.28232 1.27120 1.19429 0.93408 0.89004 1.03352 1.20408 0.87528 1.01678 1.01743 1.21219 0.99561 0.92918 0.97080 1.21438 0.95920 0.96004 0.98902 1.20579 0.90022 0.99440 1.02033 1.19254 0.81695 0.97477 1.13040 1.42520 1.06648 1.05645 1.52543 1.21022 0.90110 0.81052 1.04572 1.98419 1.77918 1.23647 1.96039 1.19654 0.89147 0.98968 1.01255 1.18280 0.95127 0.86209 0.97572 1.21050 1.36185 1.06485 0.91648 0.92965 1.25476 0.95462 0.96475 0.99797 1.69999 1.38702 1.14652 1.32192 0.85880 0.78310 0.77701 0.81475 1.20165 1.21183 1.19503 0.86957 0.89915 0.88203 0.83531 0.80776 0.81123 0.85086 0.93749 0.94811 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 8.82 71.23 0.63 -2.94 16 2 C 0.08 2.56 5.95 -19.36 -0.12 2.44 16 3 C -0.06 -1.94 5.94 -19.60 -0.12 -2.06 16 4 C 0.30 9.93 13.97 88.33 1.23 11.16 16 5 N -0.43 -15.00 18.54 19.00 0.35 -14.65 16 6 C 0.31 11.32 7.74 135.79 1.05 12.37 16 7 N -0.52 -19.06 11.31 -181.94 -2.06 -21.12 16 8 C 0.07 2.16 7.19 39.69 0.29 2.44 16 9 C -0.09 -2.16 10.06 22.30 0.22 -1.93 16 10 C -0.09 -1.42 9.96 22.01 0.22 -1.20 16 11 C -0.10 -1.78 10.03 22.33 0.22 -1.55 16 12 C -0.10 -2.50 9.62 22.32 0.21 -2.29 16 13 C -0.01 -0.33 6.88 38.84 0.27 -0.06 16 14 N -0.39 -13.82 2.98 -329.15 -0.98 -14.80 16 15 C 0.16 5.81 7.22 83.36 0.60 6.42 16 16 Cl 0.01 0.35 24.69 -2.72 -0.07 0.28 16 17 C -0.08 -3.11 5.02 -20.21 -0.10 -3.21 16 18 C 0.07 2.76 3.95 29.10 0.11 2.87 16 19 C -0.52 -24.29 8.70 25.60 0.22 -24.07 16 20 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 21 C 0.03 1.37 5.46 84.66 0.46 1.84 16 22 N -0.92 -47.72 13.29 21.45 0.28 -47.44 16 23 Si 0.94 39.76 29.54 68.60 2.03 41.78 16 24 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H 0.11 2.65 8.14 -2.38 -0.02 2.63 16 28 H 0.08 2.12 7.14 -2.39 -0.02 2.10 16 29 H 0.10 3.18 6.40 -2.39 -0.02 3.16 16 30 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 31 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.13 3.11 6.27 -2.91 -0.02 3.10 16 34 H 0.04 1.90 6.70 -2.38 -0.02 1.88 16 35 H 0.03 1.52 6.69 -2.39 -0.02 1.50 16 36 H 0.26 13.28 8.31 -92.70 -0.77 12.51 16 Total: -1.00 -59.47 329.73 6.13 -53.33 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: 1.16 Total: 2.37 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 5.42 Total: 0.23 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -2.40 Total: -98.00 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.78 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -0.07 Total: 0.28 kcal Total: -59.47 6.13 -53.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002362956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.299 kcal (2) G-P(sol) polarization free energy of solvation -59.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds