Wall clock time and date at job start Fri Apr 10 2020 14:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.55691 * 2 1 4 4 C 1.53183 * 109.55789 * 239.78300 * 2 1 3 5 5 H 1.08999 * 109.46221 * 178.40545 * 4 2 1 6 6 C 1.52995 * 109.46458 * 58.42339 * 4 2 1 7 7 N 1.46389 * 109.51168 * 298.41704 * 4 2 1 8 8 S 1.65596 * 119.69534 * 115.68060 * 7 4 2 9 9 O 1.42101 * 104.27968 * 38.54894 * 8 7 4 10 10 O 1.42106 * 104.27799 * 166.40528 * 8 7 4 11 11 C 1.81394 * 104.45341 * 282.47733 * 8 7 4 12 12 C 1.53001 * 109.47538 * 180.02562 * 11 8 7 13 13 C 1.50695 * 109.47502 * 180.02562 * 12 11 8 14 14 H 1.08005 * 119.99702 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00232 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99924 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99895 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47393 * 59.99742 * 17 15 13 19 19 H 1.48510 * 109.47007 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47358 * 299.99454 * 17 15 13 21 21 C 1.46378 * 120.60227 * 295.70462 * 7 4 2 22 22 C 1.53182 * 109.51076 * 64.29698 * 21 7 4 23 23 S 1.81666 * 108.94882 * 301.74040 * 22 21 7 24 24 O 1.42101 * 108.65126 * 301.21417 * 23 22 21 25 25 O 1.42101 * 108.65420 * 169.91050 * 23 22 21 26 26 H 1.09001 * 109.47372 * 180.21217 * 1 2 3 27 27 H 1.09007 * 109.46901 * 60.21794 * 1 2 3 28 28 H 1.09002 * 109.47390 * 300.21796 * 1 2 3 29 29 H 1.09005 * 109.47317 * 49.28637 * 6 4 2 30 30 H 1.08998 * 109.47284 * 169.28309 * 6 4 2 31 31 H 1.09002 * 109.47319 * 289.28698 * 6 4 2 32 32 H 1.09000 * 109.47017 * 300.00442 * 11 8 7 33 33 H 1.08999 * 109.47205 * 60.00189 * 11 8 7 34 34 H 1.09000 * 109.47047 * 300.00079 * 12 11 8 35 35 H 1.08999 * 109.46999 * 59.99719 * 12 11 8 36 36 H 0.97004 * 119.99583 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.46837 * 184.30341 * 21 7 4 38 38 H 1.08999 * 109.46958 * 304.29137 * 21 7 4 39 39 H 1.08998 * 109.56300 * 61.58202 * 22 21 7 40 40 H 1.08999 * 109.56011 * 181.90337 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0271 0.0000 4 6 2.0428 -0.7265 -1.2473 5 1 3.1324 -0.7009 -1.2603 6 6 1.5017 -0.0335 -2.4994 7 7 1.5877 -2.1176 -1.2246 8 16 0.5483 -2.6599 -2.3942 9 8 0.9964 -2.0241 -3.5834 10 8 0.5805 -4.0746 -2.2630 11 6 -1.0710 -2.0112 -1.8969 12 6 -2.1295 -2.4501 -2.9107 13 6 -3.4747 -1.9107 -2.4980 14 1 -3.5656 -1.3147 -1.6018 15 6 -4.5895 -2.1787 -3.2637 16 7 -4.4788 -2.9049 -4.3546 17 14 -6.2571 -1.5106 -2.7515 18 1 -6.2027 -0.0274 -2.7040 19 1 -7.2845 -1.9365 -3.7357 20 1 -6.6097 -2.0364 -1.4082 21 6 2.0426 -3.0335 -0.1773 22 6 1.5298 -2.5504 1.1829 23 16 2.1381 -0.8642 1.4778 24 8 3.5586 -0.8809 1.4422 25 8 1.4759 -0.3351 2.6183 26 1 -0.3634 -1.0276 0.0038 27 1 -0.3633 0.5105 -0.8920 28 1 -0.3634 0.5172 0.8880 29 1 1.6767 1.0398 -2.4251 30 1 2.0113 -0.4246 -3.3800 31 1 0.4315 -0.2220 -2.5853 32 1 -1.3301 -2.3977 -0.9112 33 1 -1.0309 -0.9226 -1.8613 34 1 -1.8706 -2.0639 -3.8966 35 1 -2.1695 -3.5388 -2.9460 36 1 -5.2631 -3.0931 -4.8935 37 1 1.6571 -4.0334 -0.3765 38 1 3.1322 -3.0600 -0.1660 39 1 0.4398 -2.5503 1.1829 40 1 1.8961 -3.2128 1.9672 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129354517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:35 Heat of formation + Delta-G solvation = -123.427337 kcal Electronic energy + Delta-G solvation = -25866.633034 eV Core-core repulsion = 22129.979634 eV Total energy + Delta-G solvation = -3736.653401 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.01914 -37.29455 -37.05223 -36.25426 -35.66388 -34.32272 -33.73383 -31.49861 -31.08278 -28.66524 -26.33848 -25.13291 -23.83238 -21.78394 -21.28781 -19.30164 -18.45739 -17.66604 -17.00393 -16.90359 -16.64030 -16.15377 -15.95338 -15.82058 -15.37661 -14.94796 -14.63414 -13.96641 -13.66588 -13.55665 -13.36084 -13.07653 -12.71371 -12.63373 -12.44179 -12.35149 -12.28074 -12.26002 -12.12670 -11.84851 -11.68368 -11.58252 -11.36119 -11.13011 -11.07173 -10.91483 -10.53572 -10.43217 -10.40236 -10.20045 -9.92665 -9.57008 -9.12872 -8.58226 -6.20721 -4.27041 -0.23193 0.50477 2.37463 2.64827 3.21450 3.27261 3.28239 3.38082 3.64667 3.95218 4.07314 4.12389 4.29700 4.33800 4.42572 4.63951 4.68310 4.82633 4.91674 5.07013 5.12178 5.14915 5.26812 5.41463 5.45263 5.48829 5.51598 5.54876 5.74366 5.84009 5.89294 6.31620 6.33517 6.42701 7.18020 7.23293 7.71452 8.06997 8.76065 9.38541 10.90104 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.017537 B = 0.004614 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.277029 B = 6066.560895 C = 6772.125945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.581 4.581 3 H 0.151 0.849 4 C 0.169 3.831 5 H 0.105 0.895 6 C -0.184 4.184 7 N -1.011 6.011 8 S 2.584 3.416 9 O -0.952 6.952 10 O -0.961 6.961 11 C -0.603 4.603 12 C 0.031 3.969 13 C -0.522 4.522 14 H 0.062 0.938 15 C 0.060 3.940 16 N -0.889 5.889 17 Si 0.899 3.101 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.125 3.875 22 C -0.627 4.627 23 S 2.418 3.582 24 O -0.938 6.938 25 O -0.939 6.939 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.266 0.734 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.141 0.859 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.338 4.283 9.272 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.692 4.692 3 H 0.169 0.831 4 C 0.061 3.939 5 H 0.123 0.877 6 C -0.243 4.243 7 N -0.846 5.846 8 S 2.684 3.316 9 O -0.942 6.942 10 O -0.952 6.952 11 C -0.736 4.736 12 C -0.008 4.008 13 C -0.562 4.562 14 H 0.080 0.920 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.201 1.201 21 C -0.002 4.002 22 C -0.758 4.758 23 S 2.600 3.400 24 O -0.935 6.935 25 O -0.936 6.936 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.132 0.868 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.144 0.856 38 H 0.115 0.885 39 H 0.159 0.841 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 14.060 3.978 9.113 17.221 hybrid contribution -1.878 0.464 0.245 1.950 sum 12.181 4.442 9.359 15.991 Atomic orbital electron populations 1.22173 0.89339 1.04627 1.05797 1.30510 1.07962 1.13396 1.17342 0.83084 1.20663 1.00453 0.78994 0.93746 0.87744 1.22828 1.02969 1.01419 0.97069 1.58137 1.63400 1.17596 1.45438 1.06040 0.76976 0.74318 0.74296 1.93608 1.79296 1.76217 1.45111 1.93517 1.86878 1.28954 1.85811 1.30943 1.18583 1.12430 1.11683 1.18956 0.92068 0.97806 0.91969 1.20929 0.91327 1.33817 1.10107 0.92011 1.25050 0.99477 0.94944 0.94841 1.69937 1.30551 1.37565 1.14665 0.86542 0.82994 0.79371 0.78446 1.20052 1.21050 1.20052 1.21081 1.01300 0.95490 0.82307 1.30624 1.13773 1.24102 1.07279 1.08118 0.75900 0.78848 0.77096 1.93578 1.26923 1.86126 1.86899 1.93591 1.76901 1.77271 1.45829 0.90616 0.88962 0.89820 0.90541 0.86850 0.91466 0.85917 0.85150 0.94770 0.94891 0.92394 0.85580 0.88527 0.84109 0.83498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 7.17 37.16 0.27 -1.26 16 2 C -0.58 -5.02 2.91 -26.64 -0.08 -5.09 16 3 H 0.15 0.92 8.14 -51.93 -0.42 0.49 16 4 C 0.17 1.67 2.99 -67.90 -0.20 1.47 16 5 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 6 C -0.18 -2.03 6.85 37.16 0.25 -1.78 16 7 N -1.01 -11.70 2.37 -107.27 -0.25 -11.96 16 8 S 2.58 41.40 4.80 -107.50 -0.52 40.89 16 9 O -0.95 -17.03 13.56 -57.54 -0.78 -17.81 16 10 O -0.96 -17.92 16.20 -57.54 -0.93 -18.86 16 11 C -0.60 -10.23 3.95 37.16 0.15 -10.09 16 12 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 13 C -0.52 -13.53 9.11 -34.44 -0.31 -13.84 16 14 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 17 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 C 0.12 1.20 6.23 -4.01 -0.02 1.17 16 22 C -0.63 -5.04 6.12 37.25 0.23 -4.81 16 23 S 2.42 23.63 4.82 -107.50 -0.52 23.11 16 24 O -0.94 -11.43 18.02 -57.81 -1.04 -12.47 16 25 O -0.94 -12.03 17.79 -57.81 -1.03 -13.06 16 26 H 0.08 0.71 3.50 -51.93 -0.18 0.53 16 27 H 0.09 0.86 5.73 -51.93 -0.30 0.56 16 28 H 0.08 0.72 8.00 -51.93 -0.42 0.30 16 29 H 0.08 0.64 8.11 -51.93 -0.42 0.22 16 30 H 0.11 1.43 6.30 -51.93 -0.33 1.10 16 31 H 0.07 0.82 3.60 -51.93 -0.19 0.63 16 32 H 0.12 1.80 7.30 -51.92 -0.38 1.42 16 33 H 0.13 1.92 3.96 -51.92 -0.21 1.71 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.13 1.26 6.48 -51.93 -0.34 0.92 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.14 0.98 7.16 -51.93 -0.37 0.61 16 40 H 0.15 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 322.49 15.07 4.86 4.86 Total: -1.00 -36.09 322.49 -9.66 -45.75 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.20 Total: 0.98 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 0.04 Total: -32.12 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.48 Total: -36.66 kcal Atomic # 8 Polarization: -58.41 SS G_CDS: -3.78 Total: -62.19 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 65.03 SS G_CDS: -1.03 Total: 64.00 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -36.09 -9.66 -45.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129354517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.678 kcal (2) G-P(sol) polarization free energy of solvation -36.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds