Wall clock time and date at job start Fri Apr 10 2020 14:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.24435 * 2 1 4 4 C 1.49520 * 109.24571 * 119.41301 * 2 1 3 5 5 C 1.55276 * 113.32215 * 210.15372 * 4 2 1 6 6 N 1.47206 * 115.78349 * 316.16963 * 5 4 2 7 7 S 1.65602 * 119.14900 * 137.32004 * 6 5 4 8 8 O 1.42094 * 104.27808 * 206.06978 * 7 6 5 9 9 O 1.42096 * 104.27806 * 333.92993 * 7 6 5 10 10 C 1.81404 * 104.44754 * 89.99889 * 7 6 5 11 11 C 1.52998 * 109.47246 * 179.97438 * 10 7 6 12 12 C 1.50694 * 109.47480 * 180.02562 * 11 10 7 13 13 H 1.08007 * 119.99581 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00579 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99506 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00549 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46647 * 59.99896 * 16 14 12 18 18 H 1.48499 * 109.47206 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47106 * 300.00321 * 16 14 12 20 20 C 1.42840 * 121.70056 * 317.34424 * 6 5 4 21 21 C 1.53795 * 108.16751 * 95.69091 * 20 6 5 22 22 S 1.74656 * 112.73341 * 278.33042 * 21 20 6 23 23 O 1.42110 * 108.32553 * 176.36516 * 22 21 20 24 24 O 1.42100 * 108.33087 * 306.74232 * 22 21 20 25 25 H 1.09001 * 109.46687 * 179.44351 * 1 2 3 26 26 H 1.08997 * 109.47049 * 299.44813 * 1 2 3 27 27 H 1.09001 * 109.47137 * 59.44618 * 1 2 3 28 28 H 1.08999 * 108.73069 * 89.14773 * 4 2 1 29 29 H 1.09003 * 108.68941 * 331.12883 * 4 2 1 30 30 H 1.08998 * 108.22414 * 194.53364 * 5 4 2 31 31 H 1.09002 * 108.21653 * 77.80411 * 5 4 2 32 32 H 1.09004 * 109.47278 * 300.00221 * 10 7 6 33 33 H 1.09007 * 109.47171 * 60.00078 * 10 7 6 34 34 H 1.09004 * 109.47214 * 300.00323 * 11 10 7 35 35 H 1.09002 * 109.47295 * 59.99728 * 11 10 7 36 36 H 0.97007 * 119.99861 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.72475 * 215.36004 * 20 6 5 38 38 H 1.09003 * 109.72386 * 336.02358 * 20 6 5 39 39 H 1.09003 * 108.82662 * 39.17050 * 21 20 6 40 40 H 1.09001 * 108.82833 * 157.59658 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8893 1.0291 0.0000 4 6 2.0228 -0.6933 1.2297 5 6 3.3895 -0.1548 1.7330 6 7 4.4080 0.0763 0.6956 7 16 5.3285 1.4513 0.7610 8 8 5.7100 1.6822 -0.5882 9 8 4.5170 2.3832 1.4626 10 6 6.7695 0.9843 1.7590 11 6 7.7078 2.1853 1.8934 12 6 8.9052 1.7972 2.7219 13 1 8.9885 0.7942 3.1138 14 6 9.8939 2.7226 2.9806 15 7 9.7922 3.9441 2.5038 16 14 11.3779 2.2417 4.0082 17 1 12.0971 1.1238 3.3460 18 1 12.2885 3.4074 4.1385 19 1 10.9279 1.8112 5.3563 20 6 4.6225 -0.8547 -0.3663 21 6 3.8144 -0.3840 -1.5873 22 16 2.1330 -0.8490 -1.5039 23 8 1.4607 -0.2978 -2.6281 24 8 2.0675 -2.2509 -1.2812 25 1 -0.3633 -1.0277 -0.0100 26 1 -0.3633 0.5052 0.8949 27 1 -0.3633 0.5224 -0.8850 28 1 2.1237 -1.7571 1.0151 29 1 1.2843 -0.5673 2.0214 30 1 3.7922 -0.8670 2.4532 31 1 3.2139 0.7865 2.2538 32 1 6.4392 0.6682 2.7485 33 1 7.2976 0.1638 1.2730 34 1 8.0381 2.5009 0.9037 35 1 7.1800 3.0061 2.3791 36 1 10.4880 4.5951 2.6854 37 1 5.6826 -0.8884 -0.6175 38 1 4.2845 -1.8451 -0.0611 39 1 3.8763 0.7023 -1.6524 40 1 4.2531 -0.8154 -2.4870 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331937990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:50 Heat of formation + Delta-G solvation = -147.378423 kcal Electronic energy + Delta-G solvation = -24951.689520 eV Core-core repulsion = 21213.997522 eV Total energy + Delta-G solvation = -3737.691998 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 9.48 seconds Orbital eigenvalues (eV) -38.45121 -37.06767 -36.98292 -36.24070 -35.68340 -35.13960 -34.00335 -31.54922 -31.26114 -29.07913 -25.70161 -24.80225 -23.93176 -21.97363 -21.35524 -19.09372 -18.68838 -17.97595 -17.26631 -16.93946 -16.74175 -16.18979 -15.93179 -15.56735 -15.06273 -14.66825 -14.61784 -14.26390 -13.77143 -13.59410 -13.46417 -13.30408 -12.78528 -12.69314 -12.57610 -12.32460 -12.20006 -12.10929 -12.02725 -11.88015 -11.81387 -11.66115 -11.41873 -11.15429 -11.14131 -11.08212 -10.93641 -10.53710 -10.48789 -10.36128 -9.89297 -9.53956 -9.09286 -8.58112 -6.20442 -4.26875 -0.14249 0.48744 2.56112 2.71217 3.21853 3.27234 3.28620 3.41388 3.65675 4.03459 4.10113 4.14611 4.29462 4.31220 4.40761 4.58475 4.70748 4.74926 4.84616 4.97290 5.10597 5.14722 5.24302 5.31139 5.35769 5.47524 5.54743 5.57049 5.61489 5.66216 5.69658 5.82980 6.33955 6.41614 7.17932 7.23382 7.71821 8.07387 8.76246 9.38569 10.90445 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.030712 B = 0.003253 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.464517 B = 8606.213135 C = 8699.385403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.563 4.563 3 H 0.137 0.863 4 C -0.112 4.112 5 C 0.098 3.902 6 N -1.007 6.007 7 S 2.578 3.422 8 O -0.957 6.957 9 O -0.959 6.959 10 C -0.584 4.584 11 C 0.028 3.972 12 C -0.523 4.523 13 H 0.062 0.938 14 C 0.059 3.941 15 N -0.890 5.890 16 Si 0.901 3.099 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.152 3.848 21 C -0.695 4.695 22 S 2.457 3.543 23 O -0.947 6.947 24 O -0.943 6.943 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.267 0.733 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.150 0.850 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.989 -11.104 -3.109 19.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.673 4.673 3 H 0.155 0.845 4 C -0.152 4.152 5 C -0.027 4.027 6 N -0.842 5.842 7 S 2.677 3.323 8 O -0.948 6.948 9 O -0.949 6.949 10 C -0.718 4.718 11 C -0.011 4.011 12 C -0.563 4.563 13 H 0.080 0.920 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.728 3.272 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 C 0.024 3.976 21 C -0.825 4.825 22 S 2.638 3.362 23 O -0.944 6.944 24 O -0.940 6.940 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.168 0.832 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.614 -10.652 -4.122 20.162 hybrid contribution 1.766 0.030 1.214 2.143 sum -14.848 -10.623 -2.908 18.487 Atomic orbital electron populations 1.21671 0.89661 1.03559 1.04803 1.29500 1.06639 1.14060 1.17068 0.84530 1.21357 0.96833 1.00525 0.96510 1.21975 0.87284 1.04180 0.89229 1.57335 1.49933 1.41169 1.35721 1.06226 0.76711 0.73265 0.76073 1.93555 1.84165 1.83266 1.33784 1.93540 1.66558 1.58989 1.75807 1.30433 1.16256 1.11663 1.13411 1.18982 0.93658 0.89242 0.99250 1.20942 1.04223 0.97944 1.33171 0.92017 1.25068 0.98550 0.94878 0.95909 1.69941 1.34548 1.03683 1.44590 0.86510 0.82005 0.78083 0.80571 1.20031 1.21022 1.20023 1.20192 1.01283 0.93762 0.82409 1.30816 1.26102 1.15459 1.10139 1.06684 0.76383 0.76058 0.77042 1.93568 1.72132 1.80608 1.48095 1.93531 1.86127 1.28460 1.85883 0.91276 0.89919 0.90577 0.89512 0.88152 0.90325 0.87892 0.85922 0.85992 0.94813 0.94820 0.92376 0.87875 0.87775 0.83158 0.82798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.85 37.16 0.33 -0.69 16 2 C -0.56 -4.86 2.65 -28.45 -0.08 -4.93 16 3 H 0.14 1.16 7.94 -51.93 -0.41 0.75 16 4 C -0.11 -0.83 5.01 -27.24 -0.14 -0.96 16 5 C 0.10 0.86 6.07 -2.45 -0.01 0.85 16 6 N -1.01 -11.14 2.66 -114.68 -0.31 -11.44 16 7 S 2.58 40.87 5.25 -107.50 -0.56 40.31 16 8 O -0.96 -17.43 15.63 -57.54 -0.90 -18.33 16 9 O -0.96 -17.45 16.38 -57.54 -0.94 -18.39 16 10 C -0.58 -10.15 6.12 37.16 0.23 -9.92 16 11 C 0.03 0.67 4.98 -27.89 -0.14 0.54 16 12 C -0.52 -13.92 9.11 -34.44 -0.31 -14.23 16 13 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 16 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 20 C 0.15 1.46 5.24 -5.56 -0.03 1.43 16 21 C -0.69 -7.04 5.50 37.57 0.21 -6.83 16 22 S 2.46 25.79 4.52 -107.50 -0.49 25.31 16 23 O -0.95 -12.98 17.71 -57.86 -1.02 -14.01 16 24 O -0.94 -11.35 16.40 -57.86 -0.95 -12.30 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.48 8.03 -51.93 -0.42 0.07 16 27 H 0.08 0.58 7.96 -51.93 -0.41 0.16 16 28 H 0.09 0.58 6.87 -51.93 -0.36 0.23 16 29 H 0.10 0.54 7.64 -51.93 -0.40 0.14 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.98 6.56 -51.93 -0.34 0.64 16 32 H 0.12 1.87 8.14 -51.92 -0.42 1.45 16 33 H 0.12 1.87 8.14 -51.92 -0.42 1.44 16 34 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 37 H 0.10 0.90 7.87 -51.93 -0.41 0.50 16 38 H 0.10 0.74 7.46 -51.93 -0.39 0.35 16 39 H 0.15 1.68 6.67 -49.10 -0.33 1.35 16 40 H 0.15 1.25 8.14 -49.01 -0.40 0.85 16 LS Contribution 341.70 15.07 5.15 5.15 Total: -1.00 -36.68 341.70 -10.28 -46.96 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.94 Total: -0.56 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: -0.04 Total: -33.24 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.43 Total: -36.47 kcal Atomic # 8 Polarization: -59.21 SS G_CDS: -3.82 Total: -63.03 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 66.66 SS G_CDS: -1.05 Total: 65.61 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.68 -10.28 -46.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331937990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.415 kcal (2) G-P(sol) polarization free energy of solvation -36.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.48 seconds