Wall clock time and date at job start Fri Apr 10 2020 14:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.24435 * 2 1 4 4 C 1.49520 * 109.24571 * 119.41301 * 2 1 3 5 5 C 1.55276 * 113.32215 * 210.15372 * 4 2 1 6 6 N 1.47206 * 115.78349 * 316.16963 * 5 4 2 7 7 S 1.65602 * 119.14900 * 137.32004 * 6 5 4 8 8 O 1.42094 * 104.27808 * 206.06978 * 7 6 5 9 9 O 1.42096 * 104.27806 * 333.92993 * 7 6 5 10 10 C 1.81404 * 104.44754 * 89.99889 * 7 6 5 11 11 C 1.52998 * 109.47246 * 179.97438 * 10 7 6 12 12 C 1.50694 * 109.47480 * 180.02562 * 11 10 7 13 13 H 1.08007 * 119.99581 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00579 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99506 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00549 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46647 * 59.99896 * 16 14 12 18 18 H 1.48499 * 109.47206 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47106 * 300.00321 * 16 14 12 20 20 C 1.42840 * 121.70056 * 317.34424 * 6 5 4 21 21 C 1.53795 * 108.16751 * 95.69091 * 20 6 5 22 22 S 1.74656 * 112.73341 * 278.33042 * 21 20 6 23 23 O 1.42110 * 108.32553 * 176.36516 * 22 21 20 24 24 O 1.42100 * 108.33087 * 306.74232 * 22 21 20 25 25 H 1.09001 * 109.46687 * 179.44351 * 1 2 3 26 26 H 1.08997 * 109.47049 * 299.44813 * 1 2 3 27 27 H 1.09001 * 109.47137 * 59.44618 * 1 2 3 28 28 H 1.08999 * 108.73069 * 89.14773 * 4 2 1 29 29 H 1.09003 * 108.68941 * 331.12883 * 4 2 1 30 30 H 1.08998 * 108.22414 * 194.53364 * 5 4 2 31 31 H 1.09002 * 108.21653 * 77.80411 * 5 4 2 32 32 H 1.09004 * 109.47278 * 300.00221 * 10 7 6 33 33 H 1.09007 * 109.47171 * 60.00078 * 10 7 6 34 34 H 1.09004 * 109.47214 * 300.00323 * 11 10 7 35 35 H 1.09002 * 109.47295 * 59.99728 * 11 10 7 36 36 H 0.97007 * 119.99861 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.72475 * 215.36004 * 20 6 5 38 38 H 1.09003 * 109.72386 * 336.02358 * 20 6 5 39 39 H 1.09003 * 108.82662 * 39.17050 * 21 20 6 40 40 H 1.09001 * 108.82833 * 157.59658 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8893 1.0291 0.0000 4 6 2.0228 -0.6933 1.2297 5 6 3.3895 -0.1548 1.7330 6 7 4.4080 0.0763 0.6956 7 16 5.3285 1.4513 0.7610 8 8 5.7100 1.6822 -0.5882 9 8 4.5170 2.3832 1.4626 10 6 6.7695 0.9843 1.7590 11 6 7.7078 2.1853 1.8934 12 6 8.9052 1.7972 2.7219 13 1 8.9885 0.7942 3.1138 14 6 9.8939 2.7226 2.9806 15 7 9.7922 3.9441 2.5038 16 14 11.3779 2.2417 4.0082 17 1 12.0971 1.1238 3.3460 18 1 12.2885 3.4074 4.1385 19 1 10.9279 1.8112 5.3563 20 6 4.6225 -0.8547 -0.3663 21 6 3.8144 -0.3840 -1.5873 22 16 2.1330 -0.8490 -1.5039 23 8 1.4607 -0.2978 -2.6281 24 8 2.0675 -2.2509 -1.2812 25 1 -0.3633 -1.0277 -0.0100 26 1 -0.3633 0.5052 0.8949 27 1 -0.3633 0.5224 -0.8850 28 1 2.1237 -1.7571 1.0151 29 1 1.2843 -0.5673 2.0214 30 1 3.7922 -0.8670 2.4532 31 1 3.2139 0.7865 2.2538 32 1 6.4392 0.6682 2.7485 33 1 7.2976 0.1638 1.2730 34 1 8.0381 2.5009 0.9037 35 1 7.1800 3.0061 2.3791 36 1 10.4880 4.5951 2.6854 37 1 5.6826 -0.8884 -0.6175 38 1 4.2845 -1.8451 -0.0611 39 1 3.8763 0.7023 -1.6524 40 1 4.2531 -0.8154 -2.4870 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331937990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:45 Heat of formation + Delta-G solvation = -176.604703 kcal Electronic energy + Delta-G solvation = -24952.956867 eV Core-core repulsion = 21213.997522 eV Total energy + Delta-G solvation = -3738.959345 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 6.71 seconds Orbital eigenvalues (eV) -39.24118 -38.33091 -37.96578 -37.14106 -37.03582 -35.90384 -35.85401 -33.13693 -32.30325 -29.77808 -27.58014 -25.51686 -24.68482 -23.58965 -22.30837 -19.93204 -19.78994 -19.18277 -18.49912 -18.02732 -17.81910 -17.24764 -17.05269 -16.71958 -16.53293 -16.13663 -15.55079 -15.10256 -14.92871 -14.47546 -14.43312 -14.32980 -14.02405 -13.73213 -13.62944 -13.39089 -13.29131 -13.20981 -13.15461 -13.06522 -12.92607 -12.90179 -12.79431 -12.47641 -12.23870 -12.20111 -12.16899 -11.91375 -11.78769 -11.68913 -11.15631 -11.05516 -10.64172 -10.14898 -8.26524 -6.40593 -0.93823 -0.79321 1.41671 1.44411 1.52611 1.63724 1.78819 2.37890 2.62837 2.70190 2.93737 3.07113 3.10323 3.41686 3.52022 3.60410 3.79417 3.94067 4.03904 4.06333 4.17545 4.23104 4.37806 4.44673 4.64519 4.71656 4.72903 4.76573 4.86410 5.00076 5.08686 5.14934 5.16969 5.26376 5.27995 5.61330 5.67932 6.05496 6.73398 7.30073 8.85345 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.030712 B = 0.003253 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.464517 B = 8606.213135 C = 8699.385403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.556 4.556 3 H 0.135 0.865 4 C -0.113 4.113 5 C 0.085 3.915 6 N -0.993 5.993 7 S 2.602 3.398 8 O -0.986 6.986 9 O -0.985 6.985 10 C -0.587 4.587 11 C 0.019 3.981 12 C -0.540 4.540 13 H 0.078 0.922 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.972 3.028 17 H -0.263 1.263 18 H -0.286 1.286 19 H -0.262 1.262 20 C 0.138 3.862 21 C -0.702 4.702 22 S 2.462 3.538 23 O -0.987 6.987 24 O -0.958 6.958 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.128 0.872 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.005 0.995 35 H 0.006 0.994 36 H 0.267 0.733 37 H 0.113 0.887 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.445 -13.585 -1.539 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.668 4.668 3 H 0.153 0.847 4 C -0.153 4.153 5 C -0.039 4.039 6 N -0.830 5.830 7 S 2.701 3.299 8 O -0.976 6.976 9 O -0.976 6.976 10 C -0.719 4.719 11 C -0.020 4.020 12 C -0.578 4.578 13 H 0.096 0.904 14 C -0.202 4.202 15 N -0.574 5.574 16 Si 0.796 3.204 17 H -0.188 1.188 18 H -0.212 1.212 19 H -0.187 1.187 20 C 0.011 3.989 21 C -0.833 4.833 22 S 2.647 3.353 23 O -0.985 6.985 24 O -0.956 6.956 25 H 0.098 0.902 26 H 0.121 0.879 27 H 0.086 0.914 28 H 0.118 0.882 29 H 0.146 0.854 30 H 0.130 0.870 31 H 0.113 0.887 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.076 0.924 37 H 0.131 0.869 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -17.059 -13.155 -2.563 21.694 hybrid contribution 1.809 0.780 0.712 2.095 sum -15.250 -12.375 -1.851 19.726 Atomic orbital electron populations 1.21806 0.88617 1.04541 1.05485 1.29443 1.07601 1.13671 1.16035 0.84652 1.21488 0.96472 1.00830 0.96470 1.22358 0.87573 1.04929 0.89022 1.56887 1.49387 1.40030 1.36710 1.05172 0.76138 0.73798 0.74795 1.93516 1.84748 1.84281 1.35030 1.93501 1.66917 1.60896 1.76245 1.30357 1.16350 1.09288 1.15898 1.18827 0.94650 0.91447 0.97075 1.21502 1.04866 0.98590 1.32889 0.90436 1.26101 1.02026 0.94774 0.97262 1.70094 1.35790 1.05060 1.46472 0.85392 0.77990 0.77844 0.79220 1.18794 1.21189 1.18654 1.20592 1.02078 0.94652 0.81591 1.30860 1.26130 1.14718 1.11543 1.06412 0.76104 0.75640 0.77174 1.93516 1.73136 1.81118 1.50692 1.93501 1.86349 1.29478 1.86246 0.90177 0.87912 0.91351 0.88188 0.85374 0.87009 0.88731 0.83511 0.83696 0.97645 0.97557 0.92426 0.86926 0.84386 0.84480 0.81221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.85 71.98 0.64 -1.20 16 2 C -0.56 -8.42 2.65 29.48 0.08 -8.34 16 3 H 0.14 2.13 7.94 -2.39 -0.02 2.11 16 4 C -0.11 -1.24 5.01 30.26 0.15 -1.09 16 5 C 0.08 1.20 6.07 87.03 0.53 1.73 16 6 N -0.99 -19.62 2.66 -516.72 -1.37 -21.00 16 7 S 2.60 81.05 5.25 -56.49 -0.30 80.76 16 8 O -0.99 -36.18 15.63 -127.65 -2.00 -38.18 16 9 O -0.99 -35.85 16.38 -127.65 -2.09 -37.94 16 10 C -0.59 -19.80 6.12 71.98 0.44 -19.36 16 11 C 0.02 0.94 4.98 29.85 0.15 1.09 16 12 C -0.54 -28.69 9.11 25.60 0.23 -28.46 16 13 H 0.08 3.76 7.74 -2.91 -0.02 3.73 16 14 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 15 N -0.93 -55.62 13.29 21.45 0.28 -55.34 16 16 Si 0.97 41.93 29.54 68.60 2.03 43.96 16 17 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 18 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 20 C 0.14 2.30 5.24 87.32 0.46 2.76 16 21 C -0.70 -13.41 5.50 72.25 0.40 -13.02 16 22 S 2.46 48.89 4.52 -56.49 -0.26 48.63 16 23 O -0.99 -27.25 17.71 -127.34 -2.25 -29.50 16 24 O -0.96 -21.26 16.40 -127.34 -2.09 -23.35 16 25 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 26 H 0.10 0.89 8.03 -2.39 -0.02 0.87 16 27 H 0.07 0.97 7.96 -2.39 -0.02 0.95 16 28 H 0.10 0.91 6.87 -2.39 -0.02 0.90 16 29 H 0.13 0.79 7.64 -2.39 -0.02 0.78 16 30 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.56 6.56 -2.39 -0.02 1.54 16 32 H 0.15 4.16 8.14 -2.39 -0.02 4.14 16 33 H 0.14 4.15 8.14 -2.39 -0.02 4.13 16 34 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 35 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 37 H 0.11 1.69 7.87 -2.39 -0.02 1.67 16 38 H 0.14 1.41 7.46 -2.39 -0.02 1.39 16 39 H 0.14 3.06 6.67 -4.18 -0.03 3.03 16 40 H 0.17 2.59 8.14 -4.24 -0.03 2.55 16 Total: -1.00 -81.43 341.70 -3.51 -84.93 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.00 Total: 12.61 kcal Atomic # 6 Polarization: -69.13 SS G_CDS: 3.53 Total: -65.59 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -1.09 Total: -76.34 kcal Atomic # 8 Polarization: -120.54 SS G_CDS: -8.43 Total: -128.97 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 129.94 SS G_CDS: -0.55 Total: 129.39 kcal Total: -81.43 -3.51 -84.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331937990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.673 kcal (2) G-P(sol) polarization free energy of solvation -81.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.72 seconds