Wall clock time and date at job start Fri Apr 10 2020 14:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.55967 * 2 1 4 4 C 1.52704 * 109.62578 * 239.77077 * 2 1 3 5 5 N 1.46394 * 109.77334 * 182.00592 * 4 2 1 6 6 S 1.65600 * 119.69978 * 244.31348 * 5 4 2 7 7 O 1.42100 * 104.27364 * 153.65380 * 6 5 4 8 8 O 1.42105 * 104.27508 * 25.79613 * 6 5 4 9 9 C 1.81394 * 104.45042 * 269.72631 * 6 5 4 10 10 C 1.52997 * 109.47321 * 179.97438 * 9 6 5 11 11 C 1.50694 * 109.47460 * 179.97438 * 10 9 6 12 12 H 1.08002 * 120.00179 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00472 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99350 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00608 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47339 * 179.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 300.00306 * 15 13 11 18 18 H 1.48504 * 109.46636 * 59.99865 * 15 13 11 19 19 C 1.46385 * 120.59619 * 64.03800 * 5 4 2 20 20 C 1.53184 * 109.50973 * 295.95764 * 19 5 4 21 21 H 1.09002 * 109.55661 * 298.41810 * 20 19 5 22 22 C 1.52998 * 109.55449 * 178.20695 * 20 19 5 23 23 S 1.81664 * 108.94617 * 58.26156 * 20 19 5 24 24 O 1.42096 * 108.65095 * 58.78808 * 23 20 19 25 25 O 1.42100 * 108.64662 * 190.08329 * 23 20 19 26 26 H 1.08994 * 109.47242 * 299.78480 * 1 2 3 27 27 H 1.09000 * 109.47134 * 59.78809 * 1 2 3 28 28 H 1.08999 * 109.46869 * 179.78472 * 1 2 3 29 29 H 1.08998 * 109.33682 * 61.91535 * 4 2 1 30 30 H 1.09001 * 109.33011 * 302.09926 * 4 2 1 31 31 H 1.09003 * 109.47694 * 59.99800 * 9 6 5 32 32 H 1.08999 * 109.47482 * 299.99994 * 9 6 5 33 33 H 1.09005 * 109.46800 * 60.00342 * 10 9 6 34 34 H 1.08998 * 109.47382 * 300.00141 * 10 9 6 35 35 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.46884 * 55.97362 * 19 5 4 37 37 H 1.08998 * 109.45963 * 175.95426 * 19 5 4 38 38 H 1.09003 * 109.47363 * 60.00523 * 22 20 19 39 39 H 1.09006 * 109.47281 * 179.97438 * 22 20 19 40 40 H 1.08998 * 109.47607 * 299.99780 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0270 0.0000 4 6 2.0429 -0.7241 -1.2427 5 7 3.5060 -0.7678 -1.2220 6 16 4.3673 0.0272 -2.3918 7 8 5.6134 0.3170 -1.7733 8 8 3.5006 1.0698 -2.8174 9 6 4.5810 -1.2007 -3.7097 10 6 5.3715 -0.5791 -4.8628 11 6 5.5496 -1.5993 -5.9574 12 1 5.1403 -2.5921 -5.8421 13 6 6.2360 -1.2658 -7.1057 14 7 6.7348 -0.0570 -7.2459 15 14 6.4574 -2.5307 -8.4623 16 1 7.2245 -1.9272 -9.5814 17 1 7.1971 -3.7031 -7.9301 18 1 5.1259 -2.9672 -8.9542 19 6 4.2147 -1.5030 -0.1730 20 6 3.9309 -0.8559 1.1861 21 1 4.2973 0.1707 1.1851 22 6 4.6349 -1.6499 2.2883 23 16 2.1381 -0.8615 1.4793 24 8 1.6762 -2.2049 1.4450 25 8 1.8615 -0.0587 2.6187 26 1 -0.3633 0.5105 0.8918 27 1 -0.3633 0.5171 -0.8881 28 1 -0.3633 -1.0277 -0.0039 29 1 1.7080 -0.1932 -2.1338 30 1 1.6493 -1.7405 -1.2563 31 1 3.6034 -1.5204 -4.0707 32 1 5.1235 -2.0619 -3.3196 33 1 6.3492 -0.2593 -4.5021 34 1 4.8287 0.2819 -5.2529 35 1 7.2180 0.1775 -8.0537 36 1 3.8733 -2.5381 -0.1609 37 1 5.2861 -1.4762 -0.3714 38 1 5.7094 -1.6519 2.1050 39 1 4.4325 -1.1881 3.2547 40 1 4.2648 -2.6751 2.2906 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352560294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:38 Heat of formation + Delta-G solvation = -148.322130 kcal Electronic energy + Delta-G solvation = -24868.498900 eV Core-core repulsion = 21130.765980 eV Total energy + Delta-G solvation = -3737.732920 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -38.36820 -37.10014 -36.96481 -36.29005 -35.65652 -34.87278 -33.99713 -32.40109 -31.26925 -27.58521 -26.03915 -25.55080 -22.79546 -22.30876 -21.66524 -19.37281 -18.67572 -17.96168 -17.29428 -16.78110 -16.70147 -16.32410 -16.01519 -15.44388 -15.13886 -14.63128 -14.45724 -14.17900 -13.81239 -13.53337 -13.31084 -13.13654 -12.90589 -12.76118 -12.57090 -12.38810 -12.32804 -12.24261 -12.17642 -11.87916 -11.81333 -11.72802 -11.59318 -11.49063 -11.13682 -11.07426 -10.78607 -10.54204 -10.48376 -10.22726 -9.92625 -9.60476 -9.14653 -8.57529 -6.19931 -4.26249 -0.27724 0.47380 2.40243 2.63190 3.22501 3.27858 3.29268 3.31439 3.67222 3.91508 4.06896 4.14536 4.23530 4.30907 4.41035 4.51900 4.60233 4.72926 4.88152 5.05577 5.15329 5.20845 5.22768 5.28605 5.33397 5.43787 5.45413 5.48731 5.53480 5.66278 5.67721 5.70863 6.21796 6.34564 7.18545 7.23907 7.72530 8.07966 8.76938 9.39173 10.90965 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.025214 B = 0.003374 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.224257 B = 8297.932081 C = 8484.195028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.583 4.583 3 H 0.144 0.856 4 C 0.130 3.870 5 N -1.018 6.018 6 S 2.580 3.420 7 O -0.957 6.957 8 O -0.957 6.957 9 C -0.584 4.584 10 C 0.028 3.972 11 C -0.523 4.523 12 H 0.062 0.938 13 C 0.059 3.941 14 N -0.890 5.890 15 Si 0.901 3.099 16 H -0.285 1.285 17 H -0.275 1.275 18 H -0.275 1.275 19 C 0.130 3.870 20 C -0.583 4.583 21 H 0.144 0.856 22 C -0.139 4.139 23 S 2.417 3.583 24 O -0.931 6.931 25 O -0.941 6.941 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.266 0.734 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.261 -3.056 16.539 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.694 4.694 3 H 0.162 0.838 4 C 0.003 3.997 5 N -0.852 5.852 6 S 2.680 3.320 7 O -0.948 6.948 8 O -0.948 6.948 9 C -0.718 4.718 10 C -0.011 4.011 11 C -0.563 4.563 12 H 0.080 0.920 13 C -0.144 4.144 14 N -0.528 5.528 15 Si 0.728 3.272 16 H -0.210 1.210 17 H -0.200 1.200 18 H -0.200 1.200 19 C 0.004 3.996 20 C -0.695 4.695 21 H 0.162 0.838 22 C -0.198 4.198 23 S 2.599 3.401 24 O -0.928 6.928 25 O -0.938 6.938 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.137 0.863 30 H 0.114 0.886 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.137 0.863 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.363 -2.374 17.237 19.759 hybrid contribution 0.570 -0.665 -1.629 1.850 sum -8.793 -3.039 15.607 18.170 Atomic orbital electron populations 1.21576 0.88979 1.04254 1.04999 1.30299 1.07280 1.14224 1.17623 0.83821 1.21097 0.78861 1.01787 0.97941 1.58139 1.14686 1.69784 1.42566 1.06165 0.73640 0.76726 0.75488 1.93550 1.43356 1.83390 1.74464 1.93551 1.66069 1.52732 1.82408 1.30460 1.10650 1.15576 1.15120 1.18985 0.94661 0.97087 0.90398 1.20944 1.36264 0.98012 1.01031 0.91989 1.25067 0.95189 0.95614 0.98524 1.69941 1.35931 1.18900 1.28011 0.86508 0.78401 0.81197 0.81059 1.21037 1.20026 1.20029 1.21200 1.00463 0.95436 0.82534 1.30394 1.24542 1.10162 1.04356 0.83828 1.21574 1.02861 0.99796 0.95566 1.08384 0.78359 0.76241 0.77127 1.93559 1.78717 1.33823 1.86747 1.93573 1.83261 1.70873 1.46051 0.90738 0.89342 0.90454 0.86281 0.88571 0.85866 0.85871 0.94804 0.94795 0.92387 0.88536 0.86287 0.89353 0.90745 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.21 37.16 0.34 -0.73 16 2 C -0.58 -5.44 3.20 -26.88 -0.09 -5.53 16 3 H 0.14 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.13 1.28 5.34 -4.25 -0.02 1.25 16 5 N -1.02 -11.77 3.05 -114.61 -0.35 -12.12 16 6 S 2.58 41.42 5.37 -107.50 -0.58 40.84 16 7 O -0.96 -17.67 16.59 -57.54 -0.95 -18.62 16 8 O -0.96 -17.67 16.58 -57.54 -0.95 -18.62 16 9 C -0.58 -10.17 6.12 37.16 0.23 -9.95 16 10 C 0.03 0.67 4.98 -27.89 -0.14 0.54 16 11 C -0.52 -13.89 9.11 -34.44 -0.31 -14.20 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -25.73 13.29 55.43 0.74 -25.00 16 15 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C 0.13 1.28 5.38 -4.01 -0.02 1.26 16 20 C -0.58 -5.45 3.21 -26.64 -0.09 -5.54 16 21 H 0.14 1.25 8.14 -51.93 -0.42 0.83 16 22 C -0.14 -1.08 9.22 37.16 0.34 -0.73 16 23 S 2.42 25.35 4.03 -107.50 -0.43 24.92 16 24 O -0.93 -11.35 18.01 -57.81 -1.04 -12.39 16 25 O -0.94 -12.42 18.10 -57.81 -1.05 -13.47 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.12 1.16 6.92 -51.93 -0.36 0.80 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.12 1.88 8.14 -51.92 -0.42 1.46 16 32 H 0.12 1.88 8.14 -51.92 -0.42 1.46 16 33 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.12 1.15 6.93 -51.93 -0.36 0.79 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 351.00 15.07 5.29 5.29 Total: -1.00 -36.43 351.00 -10.38 -46.82 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.18 Total: -1.10 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 0.15 Total: -32.12 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.39 Total: -37.12 kcal Atomic # 8 Polarization: -59.10 SS G_CDS: -4.00 Total: -63.10 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 66.77 SS G_CDS: -1.01 Total: 65.76 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.43 -10.38 -46.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352560294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.507 kcal (2) G-P(sol) polarization free energy of solvation -36.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds