Wall clock time and date at job start Fri Apr 10 2020 14:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.55967 * 2 1 4 4 C 1.52704 * 109.62578 * 239.77077 * 2 1 3 5 5 N 1.46394 * 109.77334 * 182.00592 * 4 2 1 6 6 S 1.65600 * 119.69978 * 244.31348 * 5 4 2 7 7 O 1.42100 * 104.27364 * 153.65380 * 6 5 4 8 8 O 1.42105 * 104.27508 * 25.79613 * 6 5 4 9 9 C 1.81394 * 104.45042 * 269.72631 * 6 5 4 10 10 C 1.52997 * 109.47321 * 179.97438 * 9 6 5 11 11 C 1.50694 * 109.47460 * 179.97438 * 10 9 6 12 12 H 1.08002 * 120.00179 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00472 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99350 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00608 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47339 * 179.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 300.00306 * 15 13 11 18 18 H 1.48504 * 109.46636 * 59.99865 * 15 13 11 19 19 C 1.46385 * 120.59619 * 64.03800 * 5 4 2 20 20 C 1.53184 * 109.50973 * 295.95764 * 19 5 4 21 21 H 1.09002 * 109.55661 * 298.41810 * 20 19 5 22 22 C 1.52998 * 109.55449 * 178.20695 * 20 19 5 23 23 S 1.81664 * 108.94617 * 58.26156 * 20 19 5 24 24 O 1.42096 * 108.65095 * 58.78808 * 23 20 19 25 25 O 1.42100 * 108.64662 * 190.08329 * 23 20 19 26 26 H 1.08994 * 109.47242 * 299.78480 * 1 2 3 27 27 H 1.09000 * 109.47134 * 59.78809 * 1 2 3 28 28 H 1.08999 * 109.46869 * 179.78472 * 1 2 3 29 29 H 1.08998 * 109.33682 * 61.91535 * 4 2 1 30 30 H 1.09001 * 109.33011 * 302.09926 * 4 2 1 31 31 H 1.09003 * 109.47694 * 59.99800 * 9 6 5 32 32 H 1.08999 * 109.47482 * 299.99994 * 9 6 5 33 33 H 1.09005 * 109.46800 * 60.00342 * 10 9 6 34 34 H 1.08998 * 109.47382 * 300.00141 * 10 9 6 35 35 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.46884 * 55.97362 * 19 5 4 37 37 H 1.08998 * 109.45963 * 175.95426 * 19 5 4 38 38 H 1.09003 * 109.47363 * 60.00523 * 22 20 19 39 39 H 1.09006 * 109.47281 * 179.97438 * 22 20 19 40 40 H 1.08998 * 109.47607 * 299.99780 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0270 0.0000 4 6 2.0429 -0.7241 -1.2427 5 7 3.5060 -0.7678 -1.2220 6 16 4.3673 0.0272 -2.3918 7 8 5.6134 0.3170 -1.7733 8 8 3.5006 1.0698 -2.8174 9 6 4.5810 -1.2007 -3.7097 10 6 5.3715 -0.5791 -4.8628 11 6 5.5496 -1.5993 -5.9574 12 1 5.1403 -2.5921 -5.8421 13 6 6.2360 -1.2658 -7.1057 14 7 6.7348 -0.0570 -7.2459 15 14 6.4574 -2.5307 -8.4623 16 1 7.2245 -1.9272 -9.5814 17 1 7.1971 -3.7031 -7.9301 18 1 5.1259 -2.9672 -8.9542 19 6 4.2147 -1.5030 -0.1730 20 6 3.9309 -0.8559 1.1861 21 1 4.2973 0.1707 1.1851 22 6 4.6349 -1.6499 2.2883 23 16 2.1381 -0.8615 1.4793 24 8 1.6762 -2.2049 1.4450 25 8 1.8615 -0.0587 2.6187 26 1 -0.3633 0.5105 0.8918 27 1 -0.3633 0.5171 -0.8881 28 1 -0.3633 -1.0277 -0.0039 29 1 1.7080 -0.1932 -2.1338 30 1 1.6493 -1.7405 -1.2563 31 1 3.6034 -1.5204 -4.0707 32 1 5.1235 -2.0619 -3.3196 33 1 6.3492 -0.2593 -4.5021 34 1 4.8287 0.2819 -5.2529 35 1 7.2180 0.1775 -8.0537 36 1 3.8733 -2.5381 -0.1609 37 1 5.2861 -1.4762 -0.3714 38 1 5.7094 -1.6519 2.1050 39 1 4.4325 -1.1881 3.2547 40 1 4.2648 -2.6751 2.2906 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352560294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:37 Heat of formation + Delta-G solvation = -177.290334 kcal Electronic energy + Delta-G solvation = -24869.755055 eV Core-core repulsion = 21130.765980 eV Total energy + Delta-G solvation = -3738.989076 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.21019 -38.33531 -37.98647 -37.17439 -37.04830 -35.88835 -35.59004 -33.20106 -33.09809 -28.30414 -27.62433 -26.60564 -23.73693 -23.34245 -23.00768 -20.34225 -19.71250 -19.21074 -18.48042 -18.08815 -17.65142 -17.28874 -17.19318 -16.57380 -16.52411 -16.34510 -15.26759 -15.14328 -14.91739 -14.51850 -14.46751 -14.01997 -14.00374 -13.74706 -13.63489 -13.58192 -13.24436 -13.22879 -13.15370 -13.13847 -12.89926 -12.87945 -12.79642 -12.77112 -12.46824 -12.35683 -12.22095 -12.16447 -11.74442 -11.56892 -11.19093 -10.97146 -10.63080 -10.34165 -8.25577 -6.39345 -1.07230 -0.82423 1.42634 1.45163 1.53041 1.54633 1.62786 2.38771 2.53034 2.73478 2.92433 3.01281 3.08559 3.29903 3.31559 3.60965 3.75482 3.84966 3.99289 4.03699 4.14441 4.21776 4.41223 4.60976 4.61445 4.65910 4.68175 4.71704 4.78056 4.82392 4.88305 5.11907 5.15221 5.25193 5.29067 5.35794 5.69101 6.06616 6.74588 7.31222 8.86283 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.025214 B = 0.003374 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.224257 B = 8297.932081 C = 8484.195028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.579 4.579 3 H 0.147 0.853 4 C 0.116 3.884 5 N -1.006 6.006 6 S 2.607 3.393 7 O -0.984 6.984 8 O -0.984 6.984 9 C -0.586 4.586 10 C 0.019 3.981 11 C -0.539 4.539 12 H 0.077 0.923 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.971 3.029 16 H -0.286 1.286 17 H -0.263 1.263 18 H -0.263 1.263 19 C 0.117 3.883 20 C -0.580 4.580 21 H 0.147 0.853 22 C -0.147 4.147 23 S 2.422 3.578 24 O -0.949 6.949 25 O -0.974 6.974 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.267 0.733 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.153 -5.091 16.876 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.692 4.692 3 H 0.165 0.835 4 C -0.009 4.009 5 N -0.843 5.843 6 S 2.706 3.294 7 O -0.974 6.974 8 O -0.974 6.974 9 C -0.719 4.719 10 C -0.020 4.020 11 C -0.578 4.578 12 H 0.096 0.904 13 C -0.201 4.201 14 N -0.574 5.574 15 Si 0.795 3.205 16 H -0.212 1.212 17 H -0.188 1.188 18 H -0.188 1.188 19 C -0.009 4.009 20 C -0.693 4.693 21 H 0.165 0.835 22 C -0.206 4.206 23 S 2.607 3.393 24 O -0.946 6.946 25 O -0.971 6.971 26 H 0.096 0.904 27 H 0.119 0.881 28 H 0.106 0.894 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.165 0.835 32 H 0.165 0.835 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.076 0.924 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.268 -4.429 17.585 20.839 hybrid contribution 0.818 -0.010 -1.658 1.848 sum -9.450 -4.438 15.927 19.044 Atomic orbital electron populations 1.21721 0.87698 1.05315 1.05856 1.30278 1.08499 1.14131 1.16310 0.83503 1.21468 0.77453 1.03788 0.98206 1.57704 1.15383 1.69596 1.41577 1.05048 0.72976 0.76060 0.75311 1.93511 1.45199 1.83830 1.74905 1.93511 1.66650 1.54054 1.83230 1.30378 1.11160 1.16628 1.13715 1.18834 0.94116 0.96431 0.92615 1.21498 1.35619 0.99033 1.01643 0.90449 1.26082 0.94971 0.97592 1.01435 1.70090 1.37226 1.21211 1.28860 0.85401 0.78801 0.78631 0.77666 1.21202 1.18767 1.18777 1.21573 1.00710 0.96725 0.81850 1.30373 1.23352 1.10837 1.04694 0.83518 1.21718 1.03562 1.00190 0.95108 1.08114 0.78684 0.75545 0.76945 1.93528 1.79369 1.34602 1.87109 1.93531 1.84064 1.71421 1.48054 0.90382 0.88088 0.89373 0.86044 0.85560 0.83465 0.83465 0.97483 0.97471 0.92438 0.85525 0.86042 0.88103 0.90388 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.21 71.98 0.66 -1.30 16 2 C -0.58 -9.69 3.20 30.50 0.10 -9.59 16 3 H 0.15 2.35 8.14 -2.39 -0.02 2.34 16 4 C 0.12 1.98 5.34 86.30 0.46 2.45 16 5 N -1.01 -20.99 3.05 -516.52 -1.57 -22.56 16 6 S 2.61 81.46 5.37 -56.49 -0.30 81.16 16 7 O -0.98 -36.02 16.59 -127.65 -2.12 -38.14 16 8 O -0.98 -36.02 16.58 -127.65 -2.12 -38.14 16 9 C -0.59 -19.71 6.12 71.98 0.44 -19.27 16 10 C 0.02 0.94 4.98 29.85 0.15 1.09 16 11 C -0.54 -28.52 9.11 25.60 0.23 -28.29 16 12 H 0.08 3.74 7.74 -2.91 -0.02 3.72 16 13 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 14 N -0.93 -55.34 13.29 21.45 0.28 -55.05 16 15 Si 0.97 41.85 29.54 68.60 2.03 43.87 16 16 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 18 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 19 C 0.12 1.99 5.38 86.46 0.46 2.46 16 20 C -0.58 -9.71 3.21 30.66 0.10 -9.61 16 21 H 0.15 2.36 8.14 -2.39 -0.02 2.34 16 22 C -0.15 -1.97 9.22 71.98 0.66 -1.30 16 23 S 2.42 46.83 4.03 -56.49 -0.23 46.60 16 24 O -0.95 -21.12 18.01 -127.39 -2.29 -23.41 16 25 O -0.97 -25.01 18.10 -127.39 -2.31 -27.32 16 26 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.12 2.07 6.92 -2.39 -0.02 2.06 16 30 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.15 4.17 8.14 -2.39 -0.02 4.15 16 32 H 0.15 4.17 8.14 -2.39 -0.02 4.15 16 33 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 34 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 36 H 0.13 1.43 8.14 -2.39 -0.02 1.42 16 37 H 0.12 2.07 6.93 -2.39 -0.02 2.05 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -79.35 351.00 -3.87 -83.23 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.02 Total: 12.80 kcal Atomic # 6 Polarization: -66.77 SS G_CDS: 3.73 Total: -63.04 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -1.29 Total: -77.62 kcal Atomic # 8 Polarization: -118.17 SS G_CDS: -8.84 Total: -127.01 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 128.30 SS G_CDS: -0.53 Total: 127.76 kcal Total: -79.35 -3.87 -83.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352560294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.062 kcal (2) G-P(sol) polarization free energy of solvation -79.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds