Wall clock time and date at job start Fri Apr 10 2020 14:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 119.99840 * 2 1 4 4 S 1.81408 * 109.47033 * 115.00138 * 3 2 1 5 5 O 1.42097 * 110.54136 * 68.37566 * 4 3 2 6 6 O 1.42099 * 110.54055 * 291.62250 * 4 3 2 7 7 N 1.65599 * 104.44950 * 180.02562 * 4 3 2 8 8 C 1.34783 * 120.00040 * 64.99899 * 7 4 3 9 9 O 1.21281 * 119.99796 * 359.97438 * 8 7 4 10 10 C 1.50697 * 119.99878 * 180.02562 * 8 7 4 11 11 C 1.50699 * 109.46970 * 180.02562 * 10 8 7 12 12 C 1.38328 * 119.96224 * 270.02075 * 11 10 8 13 13 C 1.38280 * 120.13484 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.07150 * 359.67534 * 13 12 11 15 15 C 1.38861 * 119.92830 * 0.59673 * 14 13 12 16 16 O 1.35751 * 120.06597 * 179.69892 * 15 14 13 17 17 C 1.34829 * 117.00376 * 354.17384 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38657 * 120.00083 * 185.03464 * 17 16 15 20 20 N 1.31555 * 119.99797 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47410 * 90.00109 * 21 19 17 23 23 H 1.48504 * 109.46801 * 209.99865 * 21 19 17 24 24 H 1.48497 * 109.47495 * 329.99577 * 21 19 17 25 25 C 1.38073 * 119.96952 * 89.99515 * 11 10 8 26 26 H 1.08000 * 120.00030 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99820 * 180.02562 * 1 2 3 28 28 H 1.07993 * 120.00525 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46992 * 355.00297 * 3 2 1 30 30 H 1.08997 * 109.47314 * 234.99688 * 3 2 1 31 31 H 0.97001 * 120.00149 * 245.00379 * 7 4 3 32 32 H 1.08996 * 109.47386 * 59.99804 * 10 8 7 33 33 H 1.08997 * 109.47038 * 299.99640 * 10 8 7 34 34 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 35 35 H 1.08007 * 119.96121 * 179.97438 * 13 12 11 36 36 H 1.08001 * 120.03709 * 180.32387 * 14 13 12 37 37 H 0.96998 * 119.99749 * 179.97438 * 20 19 17 38 38 H 1.08001 * 120.03594 * 0.04940 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 16 2.9918 1.4674 1.5501 5 8 4.0465 0.5166 1.6014 6 8 2.1047 1.6376 2.6470 7 7 3.7630 2.9270 1.4190 8 6 3.0448 4.0664 1.3676 9 8 1.8338 4.0226 1.4168 10 6 3.7466 5.3946 1.2478 11 6 2.7244 6.5013 1.2111 12 6 2.2085 6.9254 -0.0003 13 6 1.2708 7.9410 -0.0382 14 6 0.8414 8.5306 1.1347 15 6 1.3616 8.1109 2.3519 16 8 0.9460 8.6927 3.5059 17 6 0.1187 9.7514 3.3944 18 1 -0.2487 10.0498 2.4237 19 6 -0.2605 10.4572 4.5261 20 7 -1.0673 11.4906 4.4172 21 14 0.3755 9.9415 6.2051 22 1 1.6478 10.6514 6.4920 23 1 -0.6292 10.2875 7.2425 24 1 0.6132 8.4757 6.2156 25 6 2.3033 7.0906 2.3866 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.3585 2.1317 -0.0895 30 1 2.7556 1.3251 -0.8417 31 1 4.7315 2.9620 1.3792 32 1 4.3356 5.4130 0.3308 33 1 4.4045 5.5366 2.1051 34 1 2.5394 6.4629 -0.9185 35 1 0.8702 8.2702 -0.9857 36 1 0.1051 9.3201 1.1049 37 1 -1.3329 11.9840 5.2089 38 1 2.7067 6.7593 3.3321 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788202981.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:15 Heat of formation + Delta-G solvation = -85.852006 kcal Electronic energy + Delta-G solvation = -24600.742304 eV Core-core repulsion = 20730.274341 eV Total energy + Delta-G solvation = -3870.467964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.42031 -39.06092 -37.44095 -36.73773 -36.32471 -35.39970 -34.68020 -32.47974 -32.20292 -29.51789 -28.30188 -27.44368 -25.20886 -22.64745 -21.73383 -20.89922 -20.53349 -19.76012 -18.35210 -17.73398 -17.72268 -17.10848 -17.05936 -15.90893 -15.75189 -15.26392 -15.21655 -14.72034 -14.63222 -14.15746 -13.95890 -13.77172 -13.58967 -13.07080 -12.95893 -12.63066 -12.57241 -12.43375 -12.30735 -12.18881 -11.95043 -11.90342 -11.65032 -11.38942 -11.07193 -10.93099 -10.85214 -10.74992 -10.39752 -10.15876 -9.79397 -9.41115 -8.87701 -8.22839 -7.40538 -6.41470 -4.08357 -0.33367 1.75802 1.81828 1.97319 2.19875 2.26258 3.23322 3.26544 3.31269 3.42854 3.79837 4.00755 4.18687 4.24843 4.43558 4.53349 4.58268 4.76296 4.79875 4.95753 5.08316 5.13497 5.20773 5.37661 5.42358 5.61972 5.75430 6.04129 6.07127 6.12051 6.19863 6.29324 6.48384 6.73548 7.02371 7.13918 7.27234 7.32613 7.56307 7.78874 8.03096 8.93878 9.55899 10.66155 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.002909 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.678089 B = 9622.120118 C = 9950.628074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.176 4.176 3 C -0.585 4.585 4 S 2.591 3.409 5 O -0.949 6.949 6 O -0.921 6.921 7 N -1.059 6.059 8 C 0.532 3.468 9 O -0.474 6.474 10 C -0.093 4.093 11 C -0.046 4.046 12 C -0.190 4.190 13 C -0.075 4.075 14 C -0.215 4.215 15 C 0.161 3.839 16 O -0.217 6.217 17 C -0.390 4.390 18 H 0.107 0.893 19 C 0.064 3.936 20 N -0.880 5.880 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.173 4.173 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.128 0.872 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.433 0.567 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.133 0.867 37 H 0.279 0.721 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.941 -19.261 -11.555 24.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.196 4.196 3 C -0.715 4.715 4 S 2.687 3.313 5 O -0.939 6.939 6 O -0.911 6.911 7 N -0.824 5.824 8 C 0.319 3.681 9 O -0.343 6.343 10 C -0.135 4.135 11 C -0.047 4.047 12 C -0.209 4.209 13 C -0.094 4.094 14 C -0.234 4.234 15 C 0.108 3.892 16 O -0.122 6.122 17 C -0.465 4.465 18 H 0.124 0.876 19 C -0.139 4.139 20 N -0.518 5.518 21 Si 0.730 3.270 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.192 4.192 26 H 0.127 0.873 27 H 0.131 0.869 28 H 0.146 0.854 29 H 0.165 0.835 30 H 0.159 0.841 31 H 0.269 0.731 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.151 0.849 37 H 0.090 0.910 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.024 -19.686 -10.395 24.415 hybrid contribution 0.450 0.287 -0.061 0.538 sum 10.474 -19.399 -10.456 24.400 Atomic orbital electron populations 1.24226 0.95665 1.03365 0.94794 1.22180 0.96428 0.95205 1.05775 1.29602 1.14575 1.05437 1.21842 1.05909 0.75109 0.72785 0.77485 1.93630 1.54339 1.58917 1.87030 1.93680 1.66498 1.83651 1.47312 1.55240 1.21256 1.24215 1.81713 1.20939 0.87894 0.86060 0.73230 1.90920 1.13148 1.86659 1.43581 1.20713 0.98143 0.88996 1.05636 1.18631 0.97218 0.95440 0.93364 1.20407 1.02782 1.01716 0.95967 1.20738 0.96048 0.95384 0.97199 1.21325 1.05138 1.04930 0.92006 1.19009 0.91943 0.92102 0.86099 1.83573 1.58662 1.42850 1.27088 1.20763 1.23755 1.04362 0.97626 0.87614 1.24459 0.95718 0.94506 0.99263 1.69644 1.32950 1.17932 1.31235 0.86192 0.78641 0.80432 0.81739 1.19874 1.20751 1.18265 1.19979 1.01558 1.00088 0.97565 0.87344 0.86927 0.85400 0.83468 0.84093 0.73083 0.87093 0.87059 0.87604 0.87089 0.84909 0.91039 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 14.32 29.02 0.42 -0.68 16 2 C -0.18 -1.40 9.52 -36.02 -0.34 -1.74 16 3 C -0.59 -4.61 6.33 36.01 0.23 -4.38 16 4 S 2.59 26.72 5.09 -107.50 -0.55 26.18 16 5 O -0.95 -10.88 18.08 -57.54 -1.04 -11.92 16 6 O -0.92 -14.19 17.04 -64.79 -1.10 -15.29 16 7 N -1.06 -8.71 5.60 31.22 0.17 -8.53 16 8 C 0.53 6.18 7.56 -10.98 -0.08 6.09 16 9 O -0.47 -7.59 14.13 -11.59 -0.16 -7.76 16 10 C -0.09 -0.96 5.83 -29.04 -0.17 -1.13 16 11 C -0.05 -0.72 4.37 -104.65 -0.46 -1.18 16 12 C -0.19 -2.96 9.70 -39.53 -0.38 -3.35 16 13 C -0.08 -1.33 10.04 -39.61 -0.40 -1.72 16 14 C -0.21 -4.60 9.17 -39.39 -0.36 -4.96 16 15 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 16 O -0.22 -5.77 8.59 0.05 0.00 -5.77 16 17 C -0.39 -11.03 9.95 30.89 0.31 -10.72 16 18 H 0.11 3.04 5.44 -52.49 -0.29 2.76 16 19 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 20 N -0.88 -25.51 13.96 55.48 0.77 -24.74 16 21 Si 0.90 21.90 28.62 -169.99 -4.86 17.03 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.17 -3.38 9.64 -39.40 -0.38 -3.76 16 26 H 0.11 0.87 7.84 -52.49 -0.41 0.46 16 27 H 0.11 0.63 8.06 -52.49 -0.42 0.20 16 28 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 29 H 0.15 1.29 6.84 -51.92 -0.36 0.93 16 30 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.43 1.79 8.79 -34.47 -0.30 1.49 16 32 H 0.11 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.11 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.13 2.99 5.64 -52.49 -0.30 2.69 16 37 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 348.46 15.07 5.25 5.25 Total: -1.00 -37.56 348.46 -7.66 -45.22 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.16 Total: 2.70 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -1.98 Total: -22.37 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.95 Total: -33.27 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -2.31 Total: -40.73 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.86 Total: 17.03 kcal Atomic # 16 Polarization: 26.72 SS G_CDS: -0.55 Total: 26.18 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.56 -7.66 -45.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788202981.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.634 kcal (2) G-P(sol) polarization free energy of solvation -37.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds