Wall clock time and date at job start Fri Apr 10 2020 14:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 119.99840 * 2 1 4 4 S 1.81408 * 109.47033 * 115.00138 * 3 2 1 5 5 O 1.42097 * 110.54136 * 68.37566 * 4 3 2 6 6 O 1.42099 * 110.54055 * 291.62250 * 4 3 2 7 7 N 1.65599 * 104.44950 * 180.02562 * 4 3 2 8 8 C 1.34783 * 120.00040 * 64.99899 * 7 4 3 9 9 O 1.21281 * 119.99796 * 359.97438 * 8 7 4 10 10 C 1.50697 * 119.99878 * 180.02562 * 8 7 4 11 11 C 1.50699 * 109.46970 * 180.02562 * 10 8 7 12 12 C 1.38328 * 119.96224 * 270.02075 * 11 10 8 13 13 C 1.38280 * 120.13484 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.07150 * 359.67534 * 13 12 11 15 15 C 1.38861 * 119.92830 * 0.59673 * 14 13 12 16 16 O 1.35751 * 120.06597 * 179.69892 * 15 14 13 17 17 C 1.34829 * 117.00376 * 354.17384 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38657 * 120.00083 * 185.03464 * 17 16 15 20 20 N 1.31555 * 119.99797 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47410 * 90.00109 * 21 19 17 23 23 H 1.48504 * 109.46801 * 209.99865 * 21 19 17 24 24 H 1.48497 * 109.47495 * 329.99577 * 21 19 17 25 25 C 1.38073 * 119.96952 * 89.99515 * 11 10 8 26 26 H 1.08000 * 120.00030 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99820 * 180.02562 * 1 2 3 28 28 H 1.07993 * 120.00525 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46992 * 355.00297 * 3 2 1 30 30 H 1.08997 * 109.47314 * 234.99688 * 3 2 1 31 31 H 0.97001 * 120.00149 * 245.00379 * 7 4 3 32 32 H 1.08996 * 109.47386 * 59.99804 * 10 8 7 33 33 H 1.08997 * 109.47038 * 299.99640 * 10 8 7 34 34 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 35 35 H 1.08007 * 119.96121 * 179.97438 * 13 12 11 36 36 H 1.08001 * 120.03709 * 180.32387 * 14 13 12 37 37 H 0.96998 * 119.99749 * 179.97438 * 20 19 17 38 38 H 1.08001 * 120.03594 * 0.04940 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 16 2.9918 1.4674 1.5501 5 8 4.0465 0.5166 1.6014 6 8 2.1047 1.6376 2.6470 7 7 3.7630 2.9270 1.4190 8 6 3.0448 4.0664 1.3676 9 8 1.8338 4.0226 1.4168 10 6 3.7466 5.3946 1.2478 11 6 2.7244 6.5013 1.2111 12 6 2.2085 6.9254 -0.0003 13 6 1.2708 7.9410 -0.0382 14 6 0.8414 8.5306 1.1347 15 6 1.3616 8.1109 2.3519 16 8 0.9460 8.6927 3.5059 17 6 0.1187 9.7514 3.3944 18 1 -0.2487 10.0498 2.4237 19 6 -0.2605 10.4572 4.5261 20 7 -1.0673 11.4906 4.4172 21 14 0.3755 9.9415 6.2051 22 1 1.6478 10.6514 6.4920 23 1 -0.6292 10.2875 7.2425 24 1 0.6132 8.4757 6.2156 25 6 2.3033 7.0906 2.3866 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.3585 2.1317 -0.0895 30 1 2.7556 1.3251 -0.8417 31 1 4.7315 2.9620 1.3792 32 1 4.3356 5.4130 0.3308 33 1 4.4045 5.5366 2.1051 34 1 2.5394 6.4629 -0.9185 35 1 0.8702 8.2702 -0.9857 36 1 0.1051 9.3201 1.1049 37 1 -1.3329 11.9840 5.2089 38 1 2.7067 6.7593 3.3321 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788202981.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:14 Heat of formation + Delta-G solvation = -114.958976 kcal Electronic energy + Delta-G solvation = -24602.004477 eV Core-core repulsion = 20730.274341 eV Total energy + Delta-G solvation = -3871.730137 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.45853 -40.63611 -38.43731 -38.23276 -37.25343 -35.99781 -35.54125 -34.48472 -33.50638 -31.08256 -28.97475 -28.62910 -27.19050 -23.81354 -23.15751 -21.94117 -21.55139 -20.52075 -19.69037 -19.25438 -18.67618 -18.57105 -17.86394 -16.87618 -16.82107 -16.65907 -16.25083 -15.93886 -15.81380 -15.62125 -15.50932 -14.99121 -14.75116 -14.40836 -14.14946 -14.09103 -13.71081 -13.59128 -13.35492 -13.24994 -13.06168 -12.92297 -12.63232 -12.53590 -12.45710 -12.34459 -12.32513 -11.93454 -11.87957 -11.41375 -11.29541 -10.91155 -10.40672 -9.68090 -9.05761 -8.50946 -6.23266 -1.11122 0.47113 0.71511 1.04596 1.17850 1.29455 1.33163 1.39739 1.50575 2.27153 2.55967 2.74347 3.00209 3.06059 3.12284 3.40599 3.55489 3.71741 3.86485 4.09151 4.11253 4.27004 4.31309 4.43739 4.55027 4.56358 4.67689 4.73144 4.84444 4.97974 5.25084 5.39804 5.46596 5.55371 5.64773 5.70314 5.73414 5.78124 5.92879 6.26932 6.49457 6.83882 7.59724 8.60956 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.002909 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.678089 B = 9622.120118 C = 9950.628074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.192 4.192 3 C -0.569 4.569 4 S 2.596 3.404 5 O -0.963 6.963 6 O -0.981 6.981 7 N -1.038 6.038 8 C 0.537 3.463 9 O -0.525 6.525 10 C -0.092 4.092 11 C -0.037 4.037 12 C -0.164 4.164 13 C -0.079 4.079 14 C -0.239 4.239 15 C 0.115 3.885 16 O -0.249 6.249 17 C -0.398 4.398 18 H 0.081 0.919 19 C 0.010 3.990 20 N -0.924 5.924 21 Si 0.969 3.031 22 H -0.261 1.261 23 H -0.267 1.267 24 H -0.268 1.268 25 C -0.183 4.183 26 H 0.099 0.901 27 H 0.132 0.868 28 H 0.147 0.853 29 H 0.141 0.859 30 H 0.181 0.819 31 H 0.453 0.547 32 H 0.169 0.831 33 H 0.138 0.862 34 H 0.160 0.840 35 H 0.142 0.858 36 H 0.105 0.895 37 H 0.285 0.715 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.027 -21.887 -13.830 29.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.212 4.212 3 C -0.701 4.701 4 S 2.696 3.304 5 O -0.954 6.954 6 O -0.971 6.971 7 N -0.806 5.806 8 C 0.326 3.674 9 O -0.398 6.398 10 C -0.133 4.133 11 C -0.038 4.038 12 C -0.183 4.183 13 C -0.097 4.097 14 C -0.258 4.258 15 C 0.067 3.933 16 O -0.157 6.157 17 C -0.475 4.475 18 H 0.099 0.901 19 C -0.188 4.188 20 N -0.565 5.565 21 Si 0.791 3.209 22 H -0.186 1.186 23 H -0.192 1.192 24 H -0.193 1.193 25 C -0.202 4.202 26 H 0.117 0.883 27 H 0.150 0.850 28 H 0.165 0.835 29 H 0.159 0.841 30 H 0.198 0.802 31 H 0.294 0.706 32 H 0.186 0.814 33 H 0.156 0.844 34 H 0.178 0.822 35 H 0.159 0.841 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.201 -22.340 -12.679 28.881 hybrid contribution -0.376 0.865 0.276 0.983 sum 12.825 -21.475 -12.402 27.919 Atomic orbital electron populations 1.24458 0.96018 1.04017 0.94393 1.22502 0.96748 0.95990 1.05944 1.29482 1.14708 1.05337 1.20591 1.05563 0.74476 0.72626 0.77768 1.93607 1.54763 1.59365 1.87627 1.93616 1.67860 1.84500 1.51148 1.54814 1.22390 1.22653 1.80716 1.21135 0.87249 0.86995 0.72063 1.90932 1.15419 1.87321 1.46120 1.20923 0.96849 0.85577 1.09905 1.19237 0.97043 0.95665 0.91878 1.21094 0.99861 0.99281 0.98024 1.21148 0.96232 0.95468 0.96804 1.21352 1.05587 1.05417 0.93462 1.19640 0.94031 0.93782 0.85879 1.83512 1.59989 1.43288 1.28932 1.20711 1.24377 1.05384 0.96997 0.90146 1.25254 0.96141 0.94626 1.02784 1.69725 1.34919 1.19466 1.32410 0.85245 0.78779 0.79271 0.77584 1.18582 1.19166 1.19300 1.20356 1.00858 0.99279 0.99706 0.88255 0.84991 0.83538 0.84062 0.80162 0.70617 0.81403 0.84392 0.82249 0.84066 0.87738 0.90578 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 14.32 67.78 0.97 -1.09 16 2 C -0.19 -2.58 9.52 25.65 0.24 -2.34 16 3 C -0.57 -7.22 6.33 71.24 0.45 -6.77 16 4 S 2.60 48.03 5.09 -56.49 -0.29 47.74 16 5 O -0.96 -19.81 18.08 -127.65 -2.31 -22.12 16 6 O -0.98 -29.99 17.04 -120.71 -2.06 -32.05 16 7 N -1.04 -13.12 5.60 -173.53 -0.97 -14.10 16 8 C 0.54 10.36 7.56 87.66 0.66 11.03 16 9 O -0.53 -15.70 14.13 13.37 0.19 -15.51 16 10 C -0.09 -1.36 5.83 29.10 0.17 -1.19 16 11 C -0.04 -1.04 4.37 -19.88 -0.09 -1.13 16 12 C -0.16 -4.36 9.70 22.30 0.22 -4.14 16 13 C -0.08 -2.61 10.04 22.25 0.22 -2.39 16 14 C -0.24 -10.65 9.17 22.39 0.21 -10.44 16 15 C 0.12 5.54 6.65 22.58 0.15 5.69 16 16 O -0.25 -14.06 8.59 -22.74 -0.20 -14.25 16 17 C -0.40 -24.17 9.95 67.92 0.68 -23.50 16 18 H 0.08 5.09 5.44 -2.91 -0.02 5.08 16 19 C 0.01 0.60 5.49 84.83 0.47 1.07 16 20 N -0.92 -56.37 13.96 21.61 0.30 -56.07 16 21 Si 0.97 46.91 28.62 68.60 1.96 48.87 16 22 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 25 C -0.18 -7.03 9.64 22.39 0.22 -6.81 16 26 H 0.10 1.52 7.84 -2.91 -0.02 1.50 16 27 H 0.13 1.22 8.06 -2.91 -0.02 1.20 16 28 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.14 2.12 6.84 -2.39 -0.02 2.10 16 30 H 0.18 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.45 1.58 8.79 -96.74 -0.85 0.73 16 32 H 0.17 0.68 8.09 -2.39 -0.02 0.66 16 33 H 0.14 1.46 8.08 -2.39 -0.02 1.44 16 34 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 35 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 36 H 0.10 5.16 5.64 -2.91 -0.02 5.14 16 37 H 0.28 15.90 8.31 -92.71 -0.77 15.13 16 38 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -90.24 348.46 1.45 -88.79 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.25 Total: 10.70 kcal Atomic # 6 Polarization: -46.58 SS G_CDS: 4.56 Total: -42.01 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -0.67 Total: -70.16 kcal Atomic # 8 Polarization: -79.55 SS G_CDS: -4.37 Total: -83.92 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.96 Total: 48.87 kcal Atomic # 16 Polarization: 48.03 SS G_CDS: -0.29 Total: 47.74 kcal Total: -90.24 1.45 -88.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788202981.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.168 kcal (2) G-P(sol) polarization free energy of solvation -90.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds