Wall clock time and date at job start Fri Apr 10 2020 14:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.28625 * 2 1 4 4 C 1.54374 * 110.32023 * 122.11992 * 2 1 3 5 5 C 1.54463 * 103.04334 * 136.71921 * 4 2 1 6 6 H 1.09001 * 110.40746 * 119.28129 * 5 4 2 7 7 N 1.46502 * 110.40687 * 241.58413 * 5 4 2 8 8 S 1.65597 * 120.00371 * 216.49948 * 7 5 4 9 9 O 1.42102 * 106.40195 * 310.12981 * 8 7 5 10 10 O 1.42097 * 106.40466 * 177.20957 * 8 7 5 11 11 C 1.76196 * 107.21851 * 63.67062 * 8 7 5 12 12 C 1.37645 * 120.12722 * 244.69274 * 11 8 7 13 13 C 1.38609 * 120.24922 * 180.31679 * 12 11 8 14 14 C 1.38658 * 120.50413 * 359.67643 * 13 12 11 15 15 C 1.37600 * 120.24357 * 359.97438 * 14 13 12 16 16 C 1.40695 * 120.13435 * 64.38774 * 11 8 7 17 17 C 1.41398 * 120.23920 * 359.97438 * 16 11 8 18 18 H 1.08004 * 119.99931 * 331.40975 * 17 16 11 19 19 C 1.39940 * 120.00028 * 151.40867 * 17 16 11 20 20 N 1.30820 * 120.00164 * 347.93022 * 19 17 16 21 21 Si 1.86804 * 120.00186 * 167.93423 * 19 17 16 22 22 H 1.48499 * 109.47367 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.46650 * 299.99668 * 21 19 17 24 24 H 1.48501 * 109.47130 * 59.99533 * 21 19 17 25 25 C 1.51509 * 104.73583 * 0.42968 * 5 4 2 26 26 O 1.20824 * 125.94552 * 159.51256 * 25 5 4 27 27 O 1.34853 * 107.95263 * 339.57846 * 25 5 4 28 28 H 1.08998 * 109.47106 * 297.87923 * 1 2 3 29 29 H 1.08999 * 109.47119 * 57.88143 * 1 2 3 30 30 H 1.09002 * 109.47030 * 177.87973 * 1 2 3 31 31 H 1.09001 * 110.69819 * 18.32701 * 4 2 1 32 32 H 1.09001 * 110.84818 * 255.17923 * 4 2 1 33 33 H 0.97003 * 119.99785 * 36.49538 * 7 5 4 34 34 H 1.08001 * 119.87839 * 0.02562 * 12 11 8 35 35 H 1.08004 * 119.75361 * 179.68954 * 13 12 11 36 36 H 1.07996 * 119.88295 * 180.02562 * 14 13 12 37 37 H 1.08003 * 120.12923 * 180.02562 * 15 14 13 38 38 H 0.97003 * 120.00854 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0661 -0.7697 1.2261 5 6 3.2145 -1.6150 0.6322 6 1 4.1620 -1.3532 1.1032 7 7 2.9383 -3.0436 0.8028 8 16 4.1766 -4.0932 1.1301 9 8 5.1906 -3.8293 0.1701 10 8 3.5832 -5.3728 1.3021 11 6 4.8443 -3.6398 2.6964 12 6 6.1369 -3.1757 2.7882 13 6 6.6668 -2.8246 4.0199 14 6 5.9014 -2.9298 5.1713 15 6 4.6046 -3.3845 5.1023 16 6 4.0563 -3.7447 3.8573 17 6 2.7249 -4.2135 3.7742 18 1 2.1540 -4.0609 2.8701 19 6 2.1469 -4.8753 4.8633 20 7 2.8952 -5.2701 5.8611 21 14 0.3066 -5.1951 4.8925 22 1 -0.0524 -5.9066 6.1456 23 1 -0.4214 -3.9023 4.8307 24 1 -0.0691 -6.0312 3.7242 25 6 3.2381 -1.2536 -0.8389 26 8 4.1704 -1.4069 -1.5920 27 8 2.0370 -0.7300 -1.1577 28 1 -0.3633 0.4805 0.9084 29 1 -0.3633 0.5464 -0.8704 30 1 -0.3633 -1.0270 -0.0380 31 1 1.2922 -1.4121 1.6463 32 1 2.4452 -0.0810 1.9811 33 1 2.0299 -3.3747 0.7240 34 1 6.7420 -3.0893 1.8979 35 1 7.6837 -2.4661 4.0834 36 1 6.3243 -2.6530 6.1257 37 1 4.0099 -3.4653 6.0002 38 1 2.4947 -5.7291 6.6160 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867268964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:23 Heat of formation + Delta-G solvation = -158.233796 kcal Electronic energy + Delta-G solvation = -26484.349813 eV Core-core repulsion = 22610.743139 eV Total energy + Delta-G solvation = -3873.606674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07824 -39.38732 -38.77494 -38.09944 -36.73679 -36.39561 -35.65182 -33.33280 -32.03411 -31.36434 -30.14235 -27.34974 -25.68365 -23.47063 -23.00126 -22.84138 -22.19301 -20.51115 -19.49565 -18.86827 -18.41839 -17.90354 -17.83825 -17.52559 -17.09159 -16.37613 -16.04820 -15.88874 -15.15328 -14.98988 -14.94014 -14.66209 -14.44167 -14.08470 -13.69516 -13.56186 -13.29481 -13.11740 -13.02790 -12.96770 -12.94205 -12.86735 -12.75613 -12.66560 -12.48695 -12.31564 -12.14893 -11.90758 -11.65746 -11.44068 -11.14856 -11.09913 -10.34822 -9.84792 -9.43347 -8.78046 -6.60888 -0.33914 0.52068 0.74831 0.98961 1.40852 1.52320 1.56024 2.07977 2.18374 2.33153 2.64378 2.85640 2.98888 3.26748 3.45965 3.66958 3.80776 3.91562 4.02569 4.29780 4.33590 4.42169 4.52036 4.73008 4.84688 4.85735 4.98286 4.99457 5.12183 5.16008 5.29547 5.32953 5.51532 5.68568 5.71907 5.81549 5.97831 6.01999 6.08491 6.28440 6.47887 6.68167 6.83626 8.17602 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.006283 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.923738 B = 4455.161424 C = 5571.420939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.074 3.926 3 H 0.122 0.878 4 C -0.151 4.151 5 C 0.098 3.902 6 H 0.123 0.877 7 N -1.090 6.090 8 S 2.707 3.293 9 O -1.004 7.004 10 O -0.992 6.992 11 C -0.788 4.788 12 C -0.019 4.019 13 C -0.248 4.248 14 C -0.074 4.074 15 C -0.180 4.180 16 C 0.166 3.834 17 C -0.470 4.470 18 H 0.097 0.903 19 C 0.040 3.960 20 N -0.807 5.807 21 Si 0.974 3.026 22 H -0.269 1.269 23 H -0.234 1.234 24 H -0.264 1.264 25 C 0.473 3.527 26 O -0.472 6.472 27 O -0.360 6.360 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.428 0.572 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.514 11.488 -1.370 14.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.019 3.981 3 H 0.139 0.861 4 C -0.189 4.189 5 C -0.012 4.012 6 H 0.141 0.859 7 N -0.850 5.850 8 S 2.805 3.195 9 O -0.994 6.994 10 O -0.983 6.983 11 C -0.884 4.884 12 C -0.039 4.039 13 C -0.268 4.268 14 C -0.093 4.093 15 C -0.200 4.200 16 C 0.161 3.839 17 C -0.498 4.498 18 H 0.115 0.885 19 C -0.179 4.179 20 N -0.431 5.431 21 Si 0.793 3.207 22 H -0.193 1.193 23 H -0.157 1.157 24 H -0.189 1.189 25 C 0.310 3.690 26 O -0.354 6.354 27 O -0.278 6.278 28 H 0.127 0.873 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.149 0.851 33 H 0.265 0.735 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.749 10.652 -2.293 13.370 hybrid contribution -0.389 -0.483 0.714 0.946 sum -8.138 10.169 -1.579 13.120 Atomic orbital electron populations 1.21985 0.89830 1.03978 1.04807 1.24110 0.97919 0.95685 0.80338 0.86059 1.23470 0.97101 0.99842 0.98506 1.22074 1.04060 0.82430 0.92663 0.85928 1.55368 1.24930 1.16827 1.87921 1.00795 0.72388 0.72506 0.73787 1.93496 1.59016 1.85760 1.61143 1.93504 1.77659 1.39476 1.87638 1.29925 1.05806 1.34218 1.18433 1.20554 0.92763 0.92470 0.98078 1.20868 1.00825 1.12624 0.92462 1.21252 0.94098 0.95979 0.97928 1.21580 0.96290 1.03862 0.98280 1.17282 0.91797 0.84395 0.90420 1.20131 0.97547 1.30694 1.01396 0.88492 1.26829 1.05414 0.92297 0.93327 1.69812 1.39754 1.25938 1.07549 0.85354 0.75647 0.80729 0.78982 1.19283 1.15689 1.18893 1.24118 0.80542 0.73476 0.90856 1.90716 1.34428 1.50429 1.59804 1.87354 1.31857 1.65771 1.42848 0.87334 0.90824 0.91676 0.86478 0.85069 0.73529 0.86555 0.85693 0.85897 0.86470 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.49 71.98 0.68 -0.97 16 2 C 0.07 1.16 4.13 31.06 0.13 1.29 16 3 H 0.12 1.31 8.14 -2.39 -0.02 1.30 16 4 C -0.15 -2.69 6.51 31.56 0.21 -2.48 16 5 C 0.10 2.79 3.58 45.00 0.16 2.95 16 6 H 0.12 3.58 7.87 -2.39 -0.02 3.56 16 7 N -1.09 -36.45 4.54 -169.35 -0.77 -37.22 16 8 S 2.71 119.13 4.86 -56.49 -0.27 118.85 16 9 O -1.00 -48.21 16.76 -128.00 -2.14 -50.35 16 10 O -0.99 -49.73 16.63 -128.00 -2.13 -51.86 16 11 C -0.79 -36.39 5.79 22.73 0.13 -36.26 16 12 C -0.02 -0.82 9.53 22.22 0.21 -0.61 16 13 C -0.25 -10.04 10.05 22.46 0.23 -9.81 16 14 C -0.07 -3.06 10.02 22.22 0.22 -2.84 16 15 C -0.18 -8.40 8.66 22.73 0.20 -8.21 16 16 C 0.17 7.98 5.55 -21.29 -0.12 7.87 16 17 C -0.47 -21.92 7.66 23.46 0.18 -21.74 16 18 H 0.10 4.10 5.74 -2.91 -0.02 4.08 16 19 C 0.04 1.79 5.23 85.26 0.45 2.23 16 20 N -0.81 -38.08 10.88 21.82 0.24 -37.85 16 21 Si 0.97 33.27 29.58 68.60 2.03 35.30 16 22 H -0.27 -8.84 7.11 99.48 0.71 -8.13 16 23 H -0.23 -7.01 7.11 99.48 0.71 -6.30 16 24 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 25 C 0.47 15.35 8.16 71.49 0.58 15.93 16 26 O -0.47 -19.57 18.00 21.53 0.39 -19.18 16 27 O -0.36 -9.41 10.88 -58.03 -0.63 -10.05 16 28 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.12 1.92 7.53 -2.39 -0.02 1.90 16 32 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.43 12.11 8.52 -96.74 -0.82 11.29 16 34 H 0.12 4.83 7.33 -2.91 -0.02 4.81 16 35 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 36 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 37 H 0.12 5.56 6.24 -2.91 -0.02 5.54 16 38 H 0.30 12.55 8.30 -92.71 -0.77 11.79 16 Total: -1.00 -71.61 336.14 0.25 -71.35 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: 0.29 Total: 33.64 kcal Atomic # 6 Polarization: -55.89 SS G_CDS: 3.26 Total: -52.64 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -0.53 Total: -75.07 kcal Atomic # 8 Polarization: -126.92 SS G_CDS: -4.52 Total: -131.44 kcal Atomic # 14 Polarization: 33.27 SS G_CDS: 2.03 Total: 35.30 kcal Atomic # 16 Polarization: 119.13 SS G_CDS: -0.27 Total: 118.85 kcal Total: -71.61 0.25 -71.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867268964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.879 kcal (2) G-P(sol) polarization free energy of solvation -71.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds