Wall clock time and date at job start Fri Apr 10 2020 14:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.19145 * 2 1 4 4 C 1.54486 * 110.29001 * 238.09721 * 2 1 3 5 5 C 1.54839 * 101.54941 * 215.41248 * 4 2 1 6 6 H 1.08991 * 110.47276 * 143.36869 * 5 4 2 7 7 N 1.46508 * 110.66370 * 266.18817 * 5 4 2 8 8 S 1.65603 * 119.99605 * 212.79654 * 7 5 4 9 9 O 1.42098 * 106.40044 * 176.79832 * 8 7 5 10 10 O 1.42103 * 106.40366 * 309.71593 * 8 7 5 11 11 C 1.76200 * 107.21763 * 63.25798 * 8 7 5 12 12 C 1.37635 * 120.12720 * 246.90716 * 11 8 7 13 13 C 1.38614 * 120.24906 * 179.97438 * 12 11 8 14 14 C 1.38660 * 120.49961 * 0.03133 * 13 12 11 15 15 C 1.37599 * 120.25001 * 0.02562 * 14 13 12 16 16 C 1.40701 * 120.12412 * 66.64168 * 11 8 7 17 17 C 1.41388 * 120.24551 * 359.97438 * 16 11 8 18 18 H 1.08006 * 120.00143 * 333.17015 * 17 16 11 19 19 C 1.39949 * 120.00054 * 153.17336 * 17 16 11 20 20 N 1.30820 * 119.99741 * 343.42600 * 19 17 16 21 21 Si 1.86802 * 120.00289 * 163.42962 * 19 17 16 22 22 H 1.48501 * 109.47185 * 89.99704 * 21 19 17 23 23 H 1.48494 * 109.46861 * 209.99755 * 21 19 17 24 24 H 1.48507 * 109.46790 * 329.99848 * 21 19 17 25 25 C 1.51321 * 103.86123 * 24.82469 * 5 4 2 26 26 O 1.20832 * 124.94864 * 163.85714 * 25 5 4 27 27 O 1.33825 * 110.10222 * 343.58411 * 25 5 4 28 28 H 1.09008 * 109.47074 * 299.58395 * 1 2 3 29 29 H 1.09002 * 109.47457 * 59.58084 * 1 2 3 30 30 H 1.08993 * 109.47103 * 179.58458 * 1 2 3 31 31 H 1.08998 * 110.99474 * 333.70117 * 4 2 1 32 32 H 1.08997 * 111.00157 * 97.49093 * 4 2 1 33 33 H 0.96999 * 120.00293 * 32.80345 * 7 5 4 34 34 H 1.07995 * 119.87683 * 0.02562 * 12 11 8 35 35 H 1.07999 * 119.75104 * 180.02562 * 13 12 11 36 36 H 1.08002 * 119.87947 * 180.02562 * 14 13 12 37 37 H 1.07997 * 120.12932 * 179.97438 * 15 14 13 38 38 H 0.97003 * 119.99968 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9062 1.0230 0.0000 4 6 2.0657 -0.7658 -1.2301 5 6 3.3328 -1.4391 -0.6484 6 1 3.4667 -2.4329 -1.0756 7 7 4.5164 -0.6103 -0.8911 8 16 5.9890 -1.3241 -1.1448 9 8 6.9027 -0.2714 -1.4210 10 8 6.1719 -2.2542 -0.0863 11 6 5.8608 -2.2726 -2.6242 12 6 5.9356 -3.6460 -2.5728 13 6 5.8345 -4.3947 -3.7350 14 6 5.6580 -3.7711 -4.9608 15 6 5.5817 -2.3993 -5.0360 16 6 5.6761 -1.6293 -3.8618 17 6 5.5917 -0.2194 -3.9259 18 1 5.2388 0.3399 -3.0720 19 6 5.9655 0.4515 -5.0959 20 7 6.6853 -0.1617 -5.9999 21 14 5.4365 2.2224 -5.3667 22 1 6.4653 3.1371 -4.8097 23 1 5.2840 2.4764 -6.8218 24 1 4.1396 2.4616 -4.6839 25 6 3.0453 -1.5329 0.8343 26 8 3.6461 -2.2351 1.6128 27 8 2.0326 -0.7205 1.1587 28 1 -0.3634 0.5074 0.8938 29 1 -0.3634 0.5203 -0.8862 30 1 -0.3633 -1.0276 -0.0075 31 1 1.3454 -1.5093 -1.5714 32 1 2.3256 -0.0786 -2.0353 33 1 4.4374 0.3563 -0.9029 34 1 6.0726 -4.1422 -1.6235 35 1 5.8938 -5.4719 -3.6853 36 1 5.5801 -4.3643 -5.8600 37 1 5.4446 -1.9156 -5.9919 38 1 6.9447 0.3034 -6.8107 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867268966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:30 Heat of formation + Delta-G solvation = -139.448619 kcal Electronic energy + Delta-G solvation = -26453.828792 eV Core-core repulsion = 22581.036705 eV Total energy + Delta-G solvation = -3872.792087 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.02355 -37.67231 -37.44578 -36.27024 -35.16686 -34.88172 -33.98844 -32.44267 -30.32585 -29.65704 -29.08431 -25.63796 -24.80981 -22.17248 -21.75751 -21.24696 -20.88451 -19.03058 -17.80942 -17.58774 -17.10892 -16.52538 -16.18032 -15.62984 -15.51826 -15.30420 -14.46309 -14.31262 -14.11843 -13.84029 -13.35288 -13.24125 -13.06163 -12.84382 -12.68411 -12.35327 -12.03958 -11.86622 -11.61054 -11.51225 -11.35691 -11.24980 -11.13158 -11.07421 -10.99565 -10.82427 -10.73978 -10.61851 -10.53650 -9.97311 -9.49983 -9.47071 -8.93420 -8.11847 -7.71243 -7.15939 -4.84778 1.33473 2.25371 2.30082 2.65290 2.88261 2.90194 3.03862 3.07222 3.66930 3.78246 3.96318 4.11723 4.30105 4.41487 4.66101 4.73698 4.90965 5.16888 5.22982 5.32931 5.41792 5.51304 5.64312 5.72696 5.82954 5.97745 6.03787 6.17997 6.35657 6.67425 6.82487 6.86731 6.99326 7.18816 7.25642 7.42870 7.56066 7.63917 7.74195 7.80183 8.19190 8.38949 8.56213 9.78038 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.006049 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.668488 B = 4627.637569 C = 5641.301046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.076 3.924 3 H 0.100 0.900 4 C -0.160 4.160 5 C 0.104 3.896 6 H 0.130 0.870 7 N -1.102 6.102 8 S 2.689 3.311 9 O -0.957 6.957 10 O -0.977 6.977 11 C -0.778 4.778 12 C -0.002 4.002 13 C -0.250 4.250 14 C -0.074 4.074 15 C -0.161 4.161 16 C 0.186 3.814 17 C -0.444 4.444 18 H 0.087 0.913 19 C 0.082 3.918 20 N -0.768 5.768 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.272 1.272 24 H -0.256 1.256 25 C 0.465 3.535 26 O -0.429 6.429 27 O -0.345 6.345 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.415 0.585 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.802 3.099 2.005 12.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.020 3.980 3 H 0.118 0.882 4 C -0.199 4.199 5 C -0.007 4.007 6 H 0.147 0.853 7 N -0.858 5.858 8 S 2.787 3.213 9 O -0.948 6.948 10 O -0.967 6.967 11 C -0.874 4.874 12 C -0.022 4.022 13 C -0.271 4.271 14 C -0.093 4.093 15 C -0.180 4.180 16 C 0.182 3.818 17 C -0.472 4.472 18 H 0.105 0.895 19 C -0.141 4.141 20 N -0.390 5.390 21 Si 0.736 3.264 22 H -0.186 1.186 23 H -0.197 1.197 24 H -0.179 1.179 25 C 0.301 3.699 26 O -0.309 6.309 27 O -0.261 6.261 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.248 0.752 34 H 0.128 0.872 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.140 0.860 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.724 2.746 2.972 11.462 hybrid contribution -0.379 0.837 -1.131 1.457 sum -11.103 3.583 1.841 11.811 Atomic orbital electron populations 1.21987 0.92223 1.03594 1.03322 1.23663 0.95882 0.96037 0.82377 0.88240 1.23479 0.96343 1.01717 0.98369 1.21856 0.87832 0.98273 0.92706 0.85251 1.55861 1.24330 1.16908 1.88723 1.01618 0.71853 0.73629 0.74211 1.93563 1.58826 1.56288 1.86097 1.93540 1.84212 1.64186 1.54788 1.29764 1.35763 1.05739 1.16166 1.20302 0.92266 0.92055 0.97544 1.20495 1.15899 0.97598 0.93104 1.20902 0.97261 0.95094 0.96035 1.21437 1.05309 0.92301 0.98983 1.16978 0.82887 0.92488 0.89490 1.19819 1.36580 0.91353 0.99445 0.89536 1.25969 0.92069 1.01490 0.94565 1.69799 1.22435 1.39134 1.07645 0.86210 0.80635 0.80987 0.78586 1.18644 1.19712 1.17909 1.23642 0.77564 0.77443 0.91261 1.90791 1.46619 1.35751 1.57744 1.86760 1.48014 1.53552 1.37782 0.91294 0.89961 0.91372 0.87878 0.86602 0.75175 0.87224 0.88654 0.88781 0.86008 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.54 37.16 0.35 -0.71 16 2 C 0.08 0.72 4.25 -25.95 -0.11 0.61 16 3 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.16 -1.61 6.36 -24.98 -0.16 -1.77 16 5 C 0.10 1.52 3.48 -67.80 -0.24 1.28 16 6 H 0.13 1.92 7.86 -51.93 -0.41 1.51 16 7 N -1.10 -18.24 4.75 -4.78 -0.02 -18.26 16 8 S 2.69 58.07 4.90 -107.50 -0.53 57.55 16 9 O -0.96 -23.35 16.39 -57.17 -0.94 -24.29 16 10 O -0.98 -23.02 16.76 -57.17 -0.96 -23.98 16 11 C -0.78 -17.88 5.74 -38.87 -0.22 -18.10 16 12 C 0.00 -0.04 9.53 -39.66 -0.38 -0.42 16 13 C -0.25 -5.29 10.05 -39.29 -0.39 -5.69 16 14 C -0.07 -1.59 10.02 -39.66 -0.40 -1.98 16 15 C -0.16 -3.76 8.68 -38.87 -0.34 -4.10 16 16 C 0.19 4.48 5.55 -106.82 -0.59 3.89 16 17 C -0.44 -10.39 7.65 -37.74 -0.29 -10.68 16 18 H 0.09 1.85 5.82 -52.48 -0.31 1.55 16 19 C 0.08 1.84 5.15 -17.34 -0.09 1.75 16 20 N -0.77 -18.01 11.02 55.55 0.61 -17.40 16 21 Si 0.91 16.61 29.59 -169.99 -5.03 11.58 16 22 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 23 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 24 H -0.26 -4.33 7.11 56.52 0.40 -3.93 16 25 C 0.47 7.68 8.29 36.31 0.30 7.98 16 26 O -0.43 -8.88 18.00 -18.44 -0.33 -9.22 16 27 O -0.34 -4.74 10.63 -37.88 -0.40 -5.14 16 28 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.84 7.91 -51.93 -0.41 0.43 16 32 H 0.12 1.08 8.09 -51.93 -0.42 0.66 16 33 H 0.41 5.73 8.72 -34.47 -0.30 5.43 16 34 H 0.11 2.29 7.32 -52.49 -0.38 1.91 16 35 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.12 2.86 6.27 -52.49 -0.33 2.54 16 38 H 0.29 6.08 8.30 -40.82 -0.34 5.74 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -32.66 336.63 -9.31 -41.97 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -4.23 Total: 10.07 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: -2.55 Total: -27.94 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.59 Total: -35.66 kcal Atomic # 8 Polarization: -59.99 SS G_CDS: -2.63 Total: -62.62 kcal Atomic # 14 Polarization: 16.61 SS G_CDS: -5.03 Total: 11.58 kcal Atomic # 16 Polarization: 58.07 SS G_CDS: -0.53 Total: 57.55 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.66 -9.31 -41.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867268966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.479 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds