Wall clock time and date at job start Fri Apr 10 2020 14:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.19145 * 2 1 4 4 C 1.54486 * 110.29001 * 238.09721 * 2 1 3 5 5 C 1.54839 * 101.54941 * 215.41248 * 4 2 1 6 6 H 1.08991 * 110.47276 * 143.36869 * 5 4 2 7 7 N 1.46508 * 110.66370 * 266.18817 * 5 4 2 8 8 S 1.65603 * 119.99605 * 212.79654 * 7 5 4 9 9 O 1.42098 * 106.40044 * 176.79832 * 8 7 5 10 10 O 1.42103 * 106.40366 * 309.71593 * 8 7 5 11 11 C 1.76200 * 107.21763 * 63.25798 * 8 7 5 12 12 C 1.37635 * 120.12720 * 246.90716 * 11 8 7 13 13 C 1.38614 * 120.24906 * 179.97438 * 12 11 8 14 14 C 1.38660 * 120.49961 * 0.03133 * 13 12 11 15 15 C 1.37599 * 120.25001 * 0.02562 * 14 13 12 16 16 C 1.40701 * 120.12412 * 66.64168 * 11 8 7 17 17 C 1.41388 * 120.24551 * 359.97438 * 16 11 8 18 18 H 1.08006 * 120.00143 * 333.17015 * 17 16 11 19 19 C 1.39949 * 120.00054 * 153.17336 * 17 16 11 20 20 N 1.30820 * 119.99741 * 343.42600 * 19 17 16 21 21 Si 1.86802 * 120.00289 * 163.42962 * 19 17 16 22 22 H 1.48501 * 109.47185 * 89.99704 * 21 19 17 23 23 H 1.48494 * 109.46861 * 209.99755 * 21 19 17 24 24 H 1.48507 * 109.46790 * 329.99848 * 21 19 17 25 25 C 1.51321 * 103.86123 * 24.82469 * 5 4 2 26 26 O 1.20832 * 124.94864 * 163.85714 * 25 5 4 27 27 O 1.33825 * 110.10222 * 343.58411 * 25 5 4 28 28 H 1.09008 * 109.47074 * 299.58395 * 1 2 3 29 29 H 1.09002 * 109.47457 * 59.58084 * 1 2 3 30 30 H 1.08993 * 109.47103 * 179.58458 * 1 2 3 31 31 H 1.08998 * 110.99474 * 333.70117 * 4 2 1 32 32 H 1.08997 * 111.00157 * 97.49093 * 4 2 1 33 33 H 0.96999 * 120.00293 * 32.80345 * 7 5 4 34 34 H 1.07995 * 119.87683 * 0.02562 * 12 11 8 35 35 H 1.07999 * 119.75104 * 180.02562 * 13 12 11 36 36 H 1.08002 * 119.87947 * 180.02562 * 14 13 12 37 37 H 1.07997 * 120.12932 * 179.97438 * 15 14 13 38 38 H 0.97003 * 119.99968 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9062 1.0230 0.0000 4 6 2.0657 -0.7658 -1.2301 5 6 3.3328 -1.4391 -0.6484 6 1 3.4667 -2.4329 -1.0756 7 7 4.5164 -0.6103 -0.8911 8 16 5.9890 -1.3241 -1.1448 9 8 6.9027 -0.2714 -1.4210 10 8 6.1719 -2.2542 -0.0863 11 6 5.8608 -2.2726 -2.6242 12 6 5.9356 -3.6460 -2.5728 13 6 5.8345 -4.3947 -3.7350 14 6 5.6580 -3.7711 -4.9608 15 6 5.5817 -2.3993 -5.0360 16 6 5.6761 -1.6293 -3.8618 17 6 5.5917 -0.2194 -3.9259 18 1 5.2388 0.3399 -3.0720 19 6 5.9655 0.4515 -5.0959 20 7 6.6853 -0.1617 -5.9999 21 14 5.4365 2.2224 -5.3667 22 1 6.4653 3.1371 -4.8097 23 1 5.2840 2.4764 -6.8218 24 1 4.1396 2.4616 -4.6839 25 6 3.0453 -1.5329 0.8343 26 8 3.6461 -2.2351 1.6128 27 8 2.0326 -0.7205 1.1587 28 1 -0.3634 0.5074 0.8938 29 1 -0.3634 0.5203 -0.8862 30 1 -0.3633 -1.0276 -0.0075 31 1 1.3454 -1.5093 -1.5714 32 1 2.3256 -0.0786 -2.0353 33 1 4.4374 0.3563 -0.9029 34 1 6.0726 -4.1422 -1.6235 35 1 5.8938 -5.4719 -3.6853 36 1 5.5801 -4.3643 -5.8600 37 1 5.4446 -1.9156 -5.9919 38 1 6.9447 0.3034 -6.8107 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867268966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:29 Heat of formation + Delta-G solvation = -161.911569 kcal Electronic energy + Delta-G solvation = -26454.802859 eV Core-core repulsion = 22581.036705 eV Total energy + Delta-G solvation = -3873.766154 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.14932 -39.38096 -38.74373 -38.07831 -36.71347 -36.43499 -35.67051 -33.31781 -32.03908 -31.36988 -30.14171 -27.35016 -25.75374 -23.47332 -23.17348 -22.91822 -21.99079 -20.59607 -19.50318 -18.84953 -18.64826 -17.84504 -17.74894 -17.16341 -16.81811 -16.64003 -16.01719 -15.87405 -15.23496 -15.12553 -14.92549 -14.83834 -14.44314 -13.96533 -13.69694 -13.67180 -13.31760 -13.02991 -12.99609 -12.94667 -12.86535 -12.82693 -12.80926 -12.74901 -12.45501 -12.24913 -12.11606 -11.95024 -11.63716 -11.42281 -11.14070 -11.09145 -10.35847 -9.84662 -9.46034 -8.81742 -6.59730 -0.32289 0.53043 0.97274 0.98484 1.41190 1.52744 1.57439 2.05072 2.18092 2.28431 2.62749 2.77904 2.98155 3.19867 3.47436 3.61071 3.78765 3.97867 4.06887 4.30091 4.33972 4.40625 4.51173 4.73275 4.83891 4.87898 4.97211 5.00956 5.07621 5.15183 5.29754 5.33755 5.51455 5.72123 5.76401 5.81289 6.00685 6.02122 6.08554 6.37701 6.47513 6.66842 6.83655 8.15286 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.006049 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.668488 B = 4627.637569 C = 5641.301046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.068 3.932 3 H 0.120 0.880 4 C -0.148 4.148 5 C 0.096 3.904 6 H 0.124 0.876 7 N -1.090 6.090 8 S 2.708 3.292 9 O -0.991 6.991 10 O -1.002 7.002 11 C -0.792 4.792 12 C -0.017 4.017 13 C -0.252 4.252 14 C -0.073 4.073 15 C -0.183 4.183 16 C 0.165 3.835 17 C -0.467 4.467 18 H 0.099 0.901 19 C 0.040 3.960 20 N -0.802 5.802 21 Si 0.975 3.025 22 H -0.271 1.271 23 H -0.263 1.263 24 H -0.230 1.230 25 C 0.468 3.532 26 O -0.484 6.484 27 O -0.350 6.350 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.067 0.933 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.428 0.572 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.042 4.319 1.104 14.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.014 3.986 3 H 0.138 0.862 4 C -0.187 4.187 5 C -0.014 4.014 6 H 0.141 0.859 7 N -0.851 5.851 8 S 2.805 3.195 9 O -0.981 6.981 10 O -0.992 6.992 11 C -0.887 4.887 12 C -0.037 4.037 13 C -0.272 4.272 14 C -0.092 4.092 15 C -0.203 4.203 16 C 0.160 3.840 17 C -0.495 4.495 18 H 0.116 0.884 19 C -0.179 4.179 20 N -0.425 5.425 21 Si 0.793 3.207 22 H -0.196 1.196 23 H -0.187 1.187 24 H -0.152 1.152 25 C 0.306 3.694 26 O -0.368 6.368 27 O -0.266 6.266 28 H 0.090 0.910 29 H 0.127 0.873 30 H 0.086 0.914 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.265 0.735 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.996 3.976 2.055 13.745 hybrid contribution 0.281 0.412 -0.838 0.975 sum -12.715 4.389 1.217 13.506 Atomic orbital electron populations 1.22033 0.89865 1.04095 1.04751 1.24141 0.97663 0.96280 0.80499 0.86194 1.23582 0.94063 1.02276 0.98732 1.22088 0.88867 0.98478 0.91989 0.85855 1.55314 1.23678 1.17774 1.88299 1.00797 0.72356 0.72835 0.73466 1.93508 1.61081 1.57146 1.86412 1.93508 1.85139 1.65081 1.55508 1.29900 1.36074 1.06313 1.16446 1.20545 0.92580 0.92131 0.98394 1.20845 1.14692 0.99091 0.92546 1.21228 0.95899 0.94717 0.97336 1.21517 1.06825 0.93289 0.98679 1.17273 0.83462 0.93315 0.89952 1.20167 1.37246 0.91498 1.00578 0.88354 1.26885 0.91531 1.05605 0.93914 1.69842 1.23258 1.41076 1.08354 0.85301 0.80956 0.75296 0.79104 1.19645 1.18744 1.15247 1.23900 0.77309 0.76715 0.91486 1.90754 1.48737 1.38160 1.59130 1.86754 1.46848 1.52904 1.40078 0.91017 0.87325 0.91411 0.85478 0.85120 0.73460 0.86670 0.85821 0.85960 0.86734 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.54 71.98 0.69 -0.84 16 2 C 0.07 1.08 4.25 31.10 0.13 1.21 16 3 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 4 C -0.15 -2.52 6.36 31.73 0.20 -2.32 16 5 C 0.10 2.70 3.48 45.07 0.16 2.86 16 6 H 0.12 3.64 7.86 -2.39 -0.02 3.62 16 7 N -1.09 -35.35 4.75 -169.05 -0.80 -36.15 16 8 S 2.71 118.40 4.90 -56.49 -0.28 118.12 16 9 O -0.99 -49.09 16.39 -128.00 -2.10 -51.19 16 10 O -1.00 -48.36 16.76 -128.00 -2.15 -50.51 16 11 C -0.79 -36.66 5.74 22.73 0.13 -36.52 16 12 C -0.02 -0.74 9.53 22.22 0.21 -0.53 16 13 C -0.25 -10.33 10.05 22.46 0.23 -10.10 16 14 C -0.07 -3.06 10.02 22.22 0.22 -2.83 16 15 C -0.18 -8.58 8.68 22.73 0.20 -8.39 16 16 C 0.16 7.95 5.55 -21.29 -0.12 7.83 16 17 C -0.47 -21.73 7.65 23.46 0.18 -21.55 16 18 H 0.10 4.13 5.82 -2.91 -0.02 4.12 16 19 C 0.04 1.78 5.15 85.26 0.44 2.22 16 20 N -0.80 -37.77 11.02 21.83 0.24 -37.53 16 21 Si 0.97 32.63 29.59 68.60 2.03 34.66 16 22 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 23 H -0.26 -8.33 7.11 99.48 0.71 -7.63 16 24 H -0.23 -6.71 7.11 99.48 0.71 -6.00 16 25 C 0.47 15.34 8.29 71.43 0.59 15.93 16 26 O -0.48 -20.59 18.00 21.64 0.39 -20.20 16 27 O -0.35 -9.13 10.63 -47.90 -0.51 -9.64 16 28 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.13 1.60 7.91 -2.39 -0.02 1.58 16 32 H 0.13 1.93 8.09 -2.39 -0.02 1.91 16 33 H 0.43 11.26 8.72 -96.74 -0.84 10.42 16 34 H 0.12 4.86 7.32 -2.91 -0.02 4.84 16 35 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 36 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 37 H 0.11 5.44 6.27 -2.91 -0.02 5.42 16 38 H 0.30 12.48 8.30 -92.71 -0.77 11.71 16 Total: -1.00 -72.63 336.63 0.35 -72.28 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 0.27 Total: 33.20 kcal Atomic # 6 Polarization: -56.30 SS G_CDS: 3.26 Total: -53.04 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -0.56 Total: -73.68 kcal Atomic # 8 Polarization: -127.17 SS G_CDS: -4.36 Total: -131.54 kcal Atomic # 14 Polarization: 32.63 SS G_CDS: 2.03 Total: 34.66 kcal Atomic # 16 Polarization: 118.40 SS G_CDS: -0.28 Total: 118.12 kcal Total: -72.63 0.35 -72.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867268966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.634 kcal (2) G-P(sol) polarization free energy of solvation -72.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds