Wall clock time and date at job start Fri Apr 10 2020 14:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.49168 * 2 1 4 4 C 1.54571 * 110.43872 * 122.49049 * 2 1 3 5 5 C 1.54494 * 102.14590 * 145.59049 * 4 2 1 6 6 H 1.08992 * 110.36539 * 225.81776 * 5 4 2 7 7 N 1.46496 * 110.36695 * 103.48881 * 5 4 2 8 8 S 1.65603 * 119.99974 * 145.98947 * 7 5 4 9 9 O 1.42095 * 106.40356 * 180.02562 * 8 7 5 10 10 O 1.42109 * 106.39955 * 312.93606 * 8 7 5 11 11 C 1.76201 * 107.21721 * 66.47417 * 8 7 5 12 12 C 1.37637 * 120.13040 * 244.63299 * 11 8 7 13 13 C 1.38605 * 120.24969 * 179.74584 * 12 11 8 14 14 C 1.38657 * 120.50067 * 0.51780 * 13 12 11 15 15 C 1.37594 * 120.24969 * 359.76149 * 14 13 12 16 16 C 1.40693 * 120.12432 * 64.91446 * 11 8 7 17 17 C 1.41398 * 120.24782 * 0.02562 * 16 11 8 18 18 H 1.08000 * 119.99614 * 331.27175 * 17 16 11 19 19 C 1.39946 * 120.00188 * 151.26635 * 17 16 11 20 20 N 1.30831 * 119.99629 * 348.69376 * 19 17 16 21 21 Si 1.86794 * 120.00104 * 168.69128 * 19 17 16 22 22 H 1.48502 * 109.46889 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47260 * 119.99959 * 21 19 17 24 24 H 1.48500 * 109.47096 * 240.00249 * 21 19 17 25 25 C 1.51328 * 104.82093 * 344.65365 * 5 4 2 26 26 O 1.20829 * 125.09138 * 177.72327 * 25 5 4 27 27 O 1.34054 * 109.81586 * 357.68629 * 25 5 4 28 28 H 1.09002 * 109.47280 * 297.51126 * 1 2 3 29 29 H 1.09010 * 109.46904 * 57.51097 * 1 2 3 30 30 H 1.08994 * 109.47432 * 177.51082 * 1 2 3 31 31 H 1.09002 * 110.86643 * 263.75145 * 4 2 1 32 32 H 1.08994 * 110.86738 * 27.21504 * 4 2 1 33 33 H 0.97005 * 120.00784 * 325.98533 * 7 5 4 34 34 H 1.08003 * 119.87223 * 0.02562 * 12 11 8 35 35 H 1.08009 * 119.75141 * 180.26189 * 13 12 11 36 36 H 1.08004 * 119.87446 * 179.74539 * 14 13 12 37 37 H 1.08001 * 120.13057 * 180.02562 * 15 14 13 38 38 H 0.96998 * 119.99545 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9116 1.0210 0.0000 4 6 2.0698 -0.7780 1.2217 5 6 3.3509 -1.4278 0.6531 6 1 3.4047 -2.4771 0.9429 7 7 4.5381 -0.7073 1.1194 8 16 5.9434 -1.5315 1.4164 9 8 6.8915 -0.5655 1.8488 10 8 5.5856 -2.6692 2.1892 11 6 6.5260 -2.1435 -0.1298 12 6 6.5932 -3.4996 -0.3551 13 6 7.0461 -3.9836 -1.5724 14 6 7.4462 -3.1101 -2.5721 15 6 7.3929 -1.7506 -2.3670 16 6 6.9297 -1.2477 -1.1368 17 6 6.8712 0.1474 -0.9144 18 1 6.1369 0.5557 -0.2358 19 6 7.7648 0.9992 -1.5736 20 7 8.7890 0.5011 -2.2175 21 14 7.4952 2.8472 -1.5340 22 1 6.2752 3.1526 -0.7445 23 1 8.6687 3.5053 -0.9054 24 1 7.3278 3.3527 -2.9203 25 6 3.2147 -1.3024 -0.8488 26 8 4.0414 -1.6616 -1.6536 27 8 2.0393 -0.7340 -1.1527 28 1 -0.3634 0.4747 0.9115 29 1 -0.3633 0.5521 -0.8669 30 1 -0.3634 -1.0266 -0.0446 31 1 2.3092 -0.0986 2.0398 32 1 1.3567 -1.5362 1.5451 33 1 4.5013 0.2527 1.2541 34 1 6.2876 -4.1891 0.4180 35 1 7.0915 -5.0493 -1.7420 36 1 7.8013 -3.4984 -3.5153 37 1 7.7047 -1.0720 -3.1472 38 1 9.4081 1.0914 -2.6747 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867268967.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:34 Heat of formation + Delta-G solvation = -132.298515 kcal Electronic energy + Delta-G solvation = -26940.450468 eV Core-core repulsion = 23067.968433 eV Total energy + Delta-G solvation = -3872.482035 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -40.86180 -37.49613 -37.17883 -36.32233 -35.15063 -34.91659 -33.78804 -32.34457 -30.13365 -29.45907 -29.03627 -25.45895 -24.72362 -21.99056 -21.57492 -21.06705 -20.89687 -19.01583 -17.63601 -17.47994 -17.05149 -16.39875 -16.07128 -15.60402 -15.33538 -15.20365 -14.39837 -14.22513 -14.19205 -13.61816 -13.23608 -13.12982 -12.96916 -12.71233 -12.62888 -12.35518 -11.81416 -11.78866 -11.48977 -11.44796 -11.25267 -11.18162 -11.11991 -11.05357 -10.98345 -10.71399 -10.64415 -10.45539 -10.43103 -9.80004 -9.37671 -9.34017 -8.81568 -7.87451 -7.44677 -6.94510 -4.66239 1.38261 2.38165 2.47973 2.82385 2.98644 3.03265 3.19510 3.34671 3.77206 3.81053 4.04047 4.19016 4.44176 4.50684 4.67339 4.75289 4.93387 5.19087 5.23180 5.35520 5.46648 5.59024 5.59995 5.68028 5.83946 6.00629 6.14680 6.34469 6.50562 6.84403 6.91634 7.03380 7.18694 7.28993 7.44050 7.60794 7.77154 7.86974 7.94118 7.99555 8.40116 8.59532 8.78826 9.98962 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.011023 B = 0.006846 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.512125 B = 4089.146998 C = 4828.357593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 H 0.094 0.906 4 C -0.157 4.157 5 C 0.099 3.901 6 H 0.132 0.868 7 N -1.103 6.103 8 S 2.692 3.308 9 O -0.957 6.957 10 O -0.995 6.995 11 C -0.761 4.761 12 C -0.003 4.003 13 C -0.242 4.242 14 C -0.076 4.076 15 C -0.146 4.146 16 C 0.207 3.793 17 C -0.449 4.449 18 H 0.080 0.920 19 C 0.081 3.919 20 N -0.780 5.780 21 Si 0.914 3.086 22 H -0.258 1.258 23 H -0.269 1.269 24 H -0.270 1.270 25 C 0.453 3.547 26 O -0.394 6.394 27 O -0.348 6.348 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.415 0.585 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.122 0.878 38 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.578 1.980 4.084 14.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 H 0.112 0.888 4 C -0.196 4.196 5 C -0.012 4.012 6 H 0.149 0.851 7 N -0.859 5.859 8 S 2.791 3.209 9 O -0.948 6.948 10 O -0.985 6.985 11 C -0.858 4.858 12 C -0.024 4.024 13 C -0.263 4.263 14 C -0.095 4.095 15 C -0.166 4.166 16 C 0.202 3.798 17 C -0.478 4.478 18 H 0.098 0.902 19 C -0.140 4.140 20 N -0.404 5.404 21 Si 0.738 3.262 22 H -0.181 1.181 23 H -0.194 1.194 24 H -0.195 1.195 25 C 0.286 3.714 26 O -0.271 6.271 27 O -0.266 6.266 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.249 0.751 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.140 0.860 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.693 1.580 4.199 13.462 hybrid contribution 0.041 1.093 -0.756 1.329 sum -12.652 2.672 3.443 13.382 Atomic orbital electron populations 1.21891 0.91985 1.03622 1.03161 1.23675 0.96012 0.95679 0.82541 0.88766 1.23326 0.96386 1.01444 0.98471 1.21874 0.87153 1.00046 0.92090 0.85061 1.55833 1.25986 1.20118 1.83999 1.01392 0.71865 0.72714 0.74901 1.93559 1.58250 1.61182 1.81789 1.93449 1.83717 1.51814 1.69565 1.29606 1.33142 1.01832 1.21222 1.20135 0.93608 0.92887 0.95721 1.20420 1.12811 0.97232 0.95789 1.20848 0.97349 0.94351 0.96951 1.21427 1.03620 0.93716 0.97858 1.16837 0.83077 0.91257 0.88620 1.19738 1.14691 0.91354 1.21990 0.90215 1.25904 0.93449 1.02190 0.92433 1.69791 1.08854 1.38282 1.23437 0.86151 0.79988 0.81070 0.78993 1.18113 1.19367 1.19518 1.23627 0.79834 0.76261 0.91646 1.90928 1.36921 1.42822 1.56394 1.87066 1.35942 1.63461 1.40102 0.90190 0.91280 0.91241 0.87702 0.88065 0.75129 0.87800 0.88990 0.89075 0.86024 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.56 37.16 0.36 -0.67 16 2 C 0.08 0.75 4.18 -25.91 -0.11 0.64 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 4 C -0.16 -1.45 6.41 -25.12 -0.16 -1.61 16 5 C 0.10 1.43 3.66 -67.99 -0.25 1.18 16 6 H 0.13 1.86 7.52 -51.93 -0.39 1.47 16 7 N -1.10 -18.35 4.63 -4.95 -0.02 -18.38 16 8 S 2.69 58.15 4.95 -107.50 -0.53 57.62 16 9 O -0.96 -23.41 16.58 -57.17 -0.95 -24.36 16 10 O -0.99 -21.88 16.29 -57.17 -0.93 -22.81 16 11 C -0.76 -18.65 4.87 -38.87 -0.19 -18.84 16 12 C 0.00 -0.08 9.53 -39.67 -0.38 -0.46 16 13 C -0.24 -5.58 10.05 -39.29 -0.39 -5.98 16 14 C -0.08 -1.82 10.02 -39.66 -0.40 -2.22 16 15 C -0.15 -3.83 8.66 -38.87 -0.34 -4.17 16 16 C 0.21 5.44 4.52 -106.82 -0.48 4.96 16 17 C -0.45 -11.57 7.64 -37.74 -0.29 -11.86 16 18 H 0.08 1.90 5.71 -52.49 -0.30 1.60 16 19 C 0.08 2.00 5.24 -17.34 -0.09 1.91 16 20 N -0.78 -19.83 10.87 55.55 0.60 -19.22 16 21 Si 0.91 18.52 29.57 -169.99 -5.03 13.50 16 22 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 25 C 0.45 7.88 8.21 36.31 0.30 8.17 16 26 O -0.39 -8.73 15.79 -18.41 -0.29 -9.02 16 27 O -0.35 -5.14 10.76 -38.45 -0.41 -5.55 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.78 7.99 -51.93 -0.41 0.36 16 32 H 0.10 0.71 7.93 -51.93 -0.41 0.30 16 33 H 0.41 5.90 8.51 -34.47 -0.29 5.61 16 34 H 0.10 2.23 7.33 -52.48 -0.38 1.85 16 35 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 36 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 37 H 0.12 3.23 6.24 -52.49 -0.33 2.91 16 38 H 0.29 6.52 8.30 -40.82 -0.34 6.18 16 LS Contribution 331.52 15.07 5.00 5.00 Total: -1.00 -33.80 331.52 -9.18 -42.98 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -4.19 Total: 9.19 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: -2.42 Total: -28.94 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.58 Total: -37.60 kcal Atomic # 8 Polarization: -59.15 SS G_CDS: -2.58 Total: -61.74 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.50 kcal Atomic # 16 Polarization: 58.15 SS G_CDS: -0.53 Total: 57.62 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.80 -9.18 -42.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867268967.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.319 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds