Wall clock time and date at job start Fri Apr 10 2020 14:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.49168 * 2 1 4 4 C 1.54571 * 110.43872 * 122.49049 * 2 1 3 5 5 C 1.54494 * 102.14590 * 145.59049 * 4 2 1 6 6 H 1.08992 * 110.36539 * 225.81776 * 5 4 2 7 7 N 1.46496 * 110.36695 * 103.48881 * 5 4 2 8 8 S 1.65603 * 119.99974 * 145.98947 * 7 5 4 9 9 O 1.42095 * 106.40356 * 180.02562 * 8 7 5 10 10 O 1.42109 * 106.39955 * 312.93606 * 8 7 5 11 11 C 1.76201 * 107.21721 * 66.47417 * 8 7 5 12 12 C 1.37637 * 120.13040 * 244.63299 * 11 8 7 13 13 C 1.38605 * 120.24969 * 179.74584 * 12 11 8 14 14 C 1.38657 * 120.50067 * 0.51780 * 13 12 11 15 15 C 1.37594 * 120.24969 * 359.76149 * 14 13 12 16 16 C 1.40693 * 120.12432 * 64.91446 * 11 8 7 17 17 C 1.41398 * 120.24782 * 0.02562 * 16 11 8 18 18 H 1.08000 * 119.99614 * 331.27175 * 17 16 11 19 19 C 1.39946 * 120.00188 * 151.26635 * 17 16 11 20 20 N 1.30831 * 119.99629 * 348.69376 * 19 17 16 21 21 Si 1.86794 * 120.00104 * 168.69128 * 19 17 16 22 22 H 1.48502 * 109.46889 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47260 * 119.99959 * 21 19 17 24 24 H 1.48500 * 109.47096 * 240.00249 * 21 19 17 25 25 C 1.51328 * 104.82093 * 344.65365 * 5 4 2 26 26 O 1.20829 * 125.09138 * 177.72327 * 25 5 4 27 27 O 1.34054 * 109.81586 * 357.68629 * 25 5 4 28 28 H 1.09002 * 109.47280 * 297.51126 * 1 2 3 29 29 H 1.09010 * 109.46904 * 57.51097 * 1 2 3 30 30 H 1.08994 * 109.47432 * 177.51082 * 1 2 3 31 31 H 1.09002 * 110.86643 * 263.75145 * 4 2 1 32 32 H 1.08994 * 110.86738 * 27.21504 * 4 2 1 33 33 H 0.97005 * 120.00784 * 325.98533 * 7 5 4 34 34 H 1.08003 * 119.87223 * 0.02562 * 12 11 8 35 35 H 1.08009 * 119.75141 * 180.26189 * 13 12 11 36 36 H 1.08004 * 119.87446 * 179.74539 * 14 13 12 37 37 H 1.08001 * 120.13057 * 180.02562 * 15 14 13 38 38 H 0.96998 * 119.99545 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9116 1.0210 0.0000 4 6 2.0698 -0.7780 1.2217 5 6 3.3509 -1.4278 0.6531 6 1 3.4047 -2.4771 0.9429 7 7 4.5381 -0.7073 1.1194 8 16 5.9434 -1.5315 1.4164 9 8 6.8915 -0.5655 1.8488 10 8 5.5856 -2.6692 2.1892 11 6 6.5260 -2.1435 -0.1298 12 6 6.5932 -3.4996 -0.3551 13 6 7.0461 -3.9836 -1.5724 14 6 7.4462 -3.1101 -2.5721 15 6 7.3929 -1.7506 -2.3670 16 6 6.9297 -1.2477 -1.1368 17 6 6.8712 0.1474 -0.9144 18 1 6.1369 0.5557 -0.2358 19 6 7.7648 0.9992 -1.5736 20 7 8.7890 0.5011 -2.2175 21 14 7.4952 2.8472 -1.5340 22 1 6.2752 3.1526 -0.7445 23 1 8.6687 3.5053 -0.9054 24 1 7.3278 3.3527 -2.9203 25 6 3.2147 -1.3024 -0.8488 26 8 4.0414 -1.6616 -1.6536 27 8 2.0393 -0.7340 -1.1527 28 1 -0.3634 0.4747 0.9115 29 1 -0.3633 0.5521 -0.8669 30 1 -0.3634 -1.0266 -0.0446 31 1 2.3092 -0.0986 2.0398 32 1 1.3567 -1.5362 1.5451 33 1 4.5013 0.2527 1.2541 34 1 6.2876 -4.1891 0.4180 35 1 7.0915 -5.0493 -1.7420 36 1 7.8013 -3.4984 -3.5153 37 1 7.7047 -1.0720 -3.1472 38 1 9.4081 1.0914 -2.6747 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867268967.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:33 Heat of formation + Delta-G solvation = -156.375054 kcal Electronic energy + Delta-G solvation = -26941.494505 eV Core-core repulsion = 23067.968433 eV Total energy + Delta-G solvation = -3873.526072 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -41.99975 -39.31711 -38.53590 -38.10181 -36.73529 -36.41619 -35.61736 -33.21764 -31.98732 -31.31295 -30.08286 -27.32474 -25.66453 -23.42830 -22.97293 -22.83346 -22.06098 -20.59583 -19.49096 -18.77739 -18.57893 -17.84298 -17.61916 -17.13379 -16.73812 -16.58003 -16.03981 -15.83546 -15.34693 -15.08715 -14.92470 -14.60120 -14.46895 -13.93659 -13.64771 -13.51918 -13.27255 -13.04112 -13.01066 -12.93216 -12.84645 -12.82343 -12.77724 -12.65766 -12.49429 -12.18247 -12.10803 -11.93863 -11.62205 -11.37220 -11.18312 -11.05544 -10.27608 -9.74009 -9.34202 -8.76297 -6.57294 -0.28173 0.60748 1.02784 1.08843 1.32471 1.47938 1.50242 2.13755 2.23707 2.33277 2.66239 2.85379 3.02777 3.25974 3.51345 3.66277 3.82028 4.00519 4.12065 4.31206 4.34128 4.40934 4.50885 4.73174 4.86022 4.90793 4.97857 5.01337 5.09210 5.15636 5.34481 5.36326 5.58122 5.73638 5.81118 5.87152 6.04111 6.04869 6.12346 6.51947 6.58090 6.71120 6.91619 8.20569 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.011023 B = 0.006846 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.512125 B = 4089.146998 C = 4828.357593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 H 0.105 0.895 4 C -0.142 4.142 5 C 0.092 3.908 6 H 0.135 0.865 7 N -1.090 6.090 8 S 2.718 3.282 9 O -0.989 6.989 10 O -0.998 6.998 11 C -0.780 4.780 12 C -0.015 4.015 13 C -0.249 4.249 14 C -0.080 4.080 15 C -0.180 4.180 16 C 0.187 3.813 17 C -0.479 4.479 18 H 0.089 0.911 19 C 0.034 3.966 20 N -0.815 5.815 21 Si 0.975 3.025 22 H -0.243 1.243 23 H -0.265 1.265 24 H -0.261 1.261 25 C 0.451 3.549 26 O -0.455 6.455 27 O -0.362 6.362 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.428 0.572 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.029 2.810 5.808 17.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.011 3.989 3 H 0.122 0.878 4 C -0.180 4.180 5 C -0.018 4.018 6 H 0.152 0.848 7 N -0.850 5.850 8 S 2.814 3.186 9 O -0.980 6.980 10 O -0.988 6.988 11 C -0.874 4.874 12 C -0.035 4.035 13 C -0.269 4.269 14 C -0.099 4.099 15 C -0.200 4.200 16 C 0.183 3.817 17 C -0.507 4.507 18 H 0.107 0.893 19 C -0.183 4.183 20 N -0.440 5.440 21 Si 0.795 3.205 22 H -0.165 1.165 23 H -0.189 1.189 24 H -0.186 1.186 25 C 0.287 3.713 26 O -0.336 6.336 27 O -0.280 6.280 28 H 0.130 0.870 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.264 0.736 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.163 2.404 5.917 16.453 hybrid contribution 0.676 0.746 -1.270 1.621 sum -14.488 3.150 4.647 15.537 Atomic orbital electron populations 1.21940 0.89407 1.04165 1.04647 1.24182 0.97973 0.95643 0.81088 0.87752 1.23462 0.93645 1.02330 0.98575 1.22178 0.88408 1.00739 0.90446 0.84775 1.55337 1.25276 1.20822 1.83609 1.00532 0.72145 0.72295 0.73585 1.93511 1.60482 1.61953 1.82014 1.93437 1.83951 1.52302 1.69134 1.30091 1.32897 1.02264 1.22130 1.20503 0.93308 0.93134 0.96530 1.20802 1.11934 0.98742 0.95430 1.21166 0.96666 0.93831 0.98258 1.21472 1.05838 0.94603 0.98102 1.17096 0.83481 0.92120 0.89032 1.20052 1.15637 0.91739 1.23306 0.89258 1.26853 0.92872 1.06808 0.91759 1.69850 1.09733 1.40079 1.24310 0.85252 0.80467 0.75222 0.79607 1.16546 1.18943 1.18557 1.24135 0.79661 0.74995 0.92485 1.90899 1.39220 1.45368 1.58144 1.87046 1.34721 1.63309 1.42903 0.87024 0.91622 0.91024 0.84932 0.84931 0.73555 0.85926 0.85932 0.86818 0.87670 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.56 71.98 0.69 -0.74 16 2 C 0.07 1.07 4.18 31.13 0.13 1.20 16 3 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 4 C -0.14 -2.02 6.41 31.64 0.20 -1.82 16 5 C 0.09 2.48 3.66 44.95 0.16 2.64 16 6 H 0.13 3.55 7.52 -2.39 -0.02 3.53 16 7 N -1.09 -34.60 4.63 -169.57 -0.78 -35.38 16 8 S 2.72 116.01 4.95 -56.49 -0.28 115.73 16 9 O -0.99 -48.36 16.58 -128.00 -2.12 -50.49 16 10 O -1.00 -42.55 16.29 -128.00 -2.08 -44.63 16 11 C -0.78 -38.76 4.87 22.73 0.11 -38.65 16 12 C -0.02 -0.71 9.53 22.22 0.21 -0.50 16 13 C -0.25 -11.47 10.05 22.46 0.23 -11.25 16 14 C -0.08 -3.94 10.02 22.22 0.22 -3.71 16 15 C -0.18 -9.85 8.66 22.73 0.20 -9.65 16 16 C 0.19 10.16 4.52 -21.29 -0.10 10.06 16 17 C -0.48 -25.30 7.64 23.46 0.18 -25.12 16 18 H 0.09 4.32 5.71 -2.91 -0.02 4.30 16 19 C 0.03 1.71 5.24 85.26 0.45 2.16 16 20 N -0.81 -43.00 10.87 21.83 0.24 -42.76 16 21 Si 0.98 37.90 29.57 68.60 2.03 39.93 16 22 H -0.24 -8.71 7.11 99.48 0.71 -8.01 16 23 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 24 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 25 C 0.45 15.57 8.21 71.44 0.59 16.15 16 26 O -0.46 -20.83 15.79 21.63 0.34 -20.49 16 27 O -0.36 -10.29 10.76 -50.07 -0.54 -10.83 16 28 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.13 1.25 7.99 -2.39 -0.02 1.23 16 32 H 0.13 1.16 7.93 -2.39 -0.02 1.14 16 33 H 0.43 11.32 8.51 -96.74 -0.82 10.50 16 34 H 0.12 5.18 7.33 -2.91 -0.02 5.16 16 35 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 36 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 37 H 0.11 5.95 6.24 -2.91 -0.02 5.93 16 38 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 Total: -1.00 -77.04 331.52 0.36 -76.68 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.29 Total: 31.47 kcal Atomic # 6 Polarization: -62.49 SS G_CDS: 3.27 Total: -59.22 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -0.55 Total: -78.15 kcal Atomic # 8 Polarization: -122.03 SS G_CDS: -4.40 Total: -126.44 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Atomic # 16 Polarization: 116.01 SS G_CDS: -0.28 Total: 115.73 kcal Total: -77.04 0.36 -76.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867268967.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.693 kcal (2) G-P(sol) polarization free energy of solvation -77.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds