Wall clock time and date at job start Fri Apr 10 2020 14:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46153 * 2 1 4 4 C 1.53180 * 109.46545 * 119.97129 * 2 1 3 5 5 S 1.81665 * 108.94878 * 178.26912 * 4 2 1 6 6 O 1.42102 * 108.64978 * 58.79358 * 5 4 2 7 7 O 1.42101 * 108.64951 * 190.08783 * 5 4 2 8 8 C 1.81661 * 101.38784 * 304.44188 * 5 4 2 9 9 C 1.53175 * 108.94957 * 55.56232 * 8 5 4 10 10 N 1.46379 * 109.46653 * 240.01704 * 2 1 3 11 11 S 1.65605 * 119.70111 * 355.41632 * 10 2 1 12 12 O 1.42096 * 104.27444 * 39.50617 * 11 10 2 13 13 O 1.42095 * 104.27874 * 167.36803 * 11 10 2 14 14 C 1.81402 * 104.44702 * 283.43972 * 11 10 2 15 15 C 1.52995 * 109.47280 * 180.02562 * 14 11 10 16 16 C 1.52997 * 109.47421 * 179.97438 * 15 14 11 17 17 C 1.50701 * 109.47431 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99666 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00197 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99998 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99927 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47340 * 89.99789 * 21 19 17 23 23 H 1.48503 * 109.46882 * 210.00136 * 21 19 17 24 24 H 1.48502 * 109.47187 * 329.99680 * 21 19 17 25 25 H 1.09005 * 109.46700 * 169.71562 * 1 2 3 26 26 H 1.08999 * 109.46989 * 289.71714 * 1 2 3 27 27 H 1.09001 * 109.47148 * 49.71975 * 1 2 3 28 28 H 1.09004 * 109.56095 * 298.11756 * 4 2 1 29 29 H 1.09010 * 109.55447 * 58.32599 * 4 2 1 30 30 H 1.09005 * 109.55365 * 175.40694 * 8 5 4 31 31 H 1.09000 * 109.55615 * 295.61222 * 8 5 4 32 32 H 1.09002 * 109.46350 * 181.72945 * 9 8 5 33 33 H 1.08999 * 109.46731 * 61.75710 * 9 8 5 34 34 H 1.09001 * 109.47393 * 300.00125 * 14 11 10 35 35 H 1.09001 * 109.47098 * 59.99390 * 14 11 10 36 36 H 1.08997 * 109.47247 * 299.99919 * 15 14 11 37 37 H 1.08993 * 109.47241 * 59.99678 * 15 14 11 38 38 H 1.09001 * 109.47417 * 300.00222 * 16 15 14 39 39 H 1.09006 * 109.46885 * 59.99872 * 16 15 14 40 40 H 0.96999 * 120.00069 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0405 -0.7215 1.2511 5 16 3.8564 -0.7584 1.2112 6 8 4.3370 0.5778 1.1586 7 8 4.3160 -1.6239 2.2403 8 6 4.1638 -1.5502 -0.3946 9 6 3.4508 -0.7496 -1.4886 10 7 2.0179 -0.6897 -1.1954 11 16 0.9394 -1.4147 -2.2220 12 8 -0.1571 -0.5123 -2.2725 13 8 1.7032 -1.7054 -3.3844 14 6 0.4651 -2.9457 -1.3725 15 6 -0.5406 -3.7149 -2.2313 16 6 -0.9402 -5.0066 -1.5152 17 6 -1.9313 -5.7640 -2.3608 18 1 -2.2452 -5.3638 -3.3136 19 6 -2.4382 -6.9671 -1.9177 20 7 -3.3035 -7.6278 -2.6555 21 14 -1.8969 -7.6582 -0.2687 22 1 -2.8066 -7.1661 0.7969 23 1 -1.9445 -9.1418 -0.3141 24 1 -0.5093 -7.2161 0.0218 25 1 -0.3633 -1.0112 -0.1835 26 1 -0.3633 0.3467 0.9674 27 1 -0.3633 0.6644 -0.7840 28 1 1.7057 -0.1892 2.1415 29 1 1.6536 -1.7405 1.2681 30 1 5.2354 -1.5667 -0.5940 31 1 3.7801 -2.5703 -0.3778 32 1 3.6044 -1.2350 -2.4524 33 1 3.8572 0.2612 -1.5223 34 1 1.3503 -3.5611 -1.2113 35 1 0.0119 -2.7026 -0.4114 36 1 -1.4259 -3.0999 -2.3928 37 1 -0.0870 -3.9581 -3.1921 38 1 -0.0548 -5.6216 -1.3540 39 1 -1.3938 -4.7638 -0.5541 40 1 -3.6604 -8.4741 -2.3436 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352600716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:44 Heat of formation + Delta-G solvation = -128.968305 kcal Electronic energy + Delta-G solvation = -24967.926052 eV Core-core repulsion = 21231.032377 eV Total energy + Delta-G solvation = -3736.893675 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.81755 -37.51664 -37.25366 -36.42353 -36.03600 -34.99373 -33.53854 -32.31241 -30.25280 -28.61489 -27.99874 -24.14908 -23.82653 -22.36034 -20.47728 -19.52362 -18.96412 -17.78976 -17.28368 -16.99322 -16.96157 -16.55138 -16.26617 -15.92233 -15.45763 -15.33084 -14.53697 -14.27723 -13.89860 -13.73104 -13.54943 -13.07969 -13.00639 -12.87206 -12.67390 -12.53379 -12.45230 -12.40054 -12.37345 -12.12369 -12.02605 -11.71646 -11.58682 -11.46818 -11.09094 -11.00482 -10.75191 -10.56314 -10.19616 -10.08224 -9.93168 -9.52333 -9.34359 -8.66018 -6.15468 -4.15518 -0.42711 0.08579 2.20903 2.27407 3.20601 3.20866 3.28914 3.29772 3.45278 3.67338 3.83100 3.87039 4.03347 4.26021 4.33413 4.42218 4.49357 4.61364 4.70941 4.85672 4.86761 4.96567 5.13260 5.17890 5.24938 5.28342 5.37061 5.53627 5.66293 5.95262 6.05867 6.08422 6.17262 6.53732 7.01164 7.15290 7.62664 8.39479 8.88396 9.45265 10.97732 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016399 B = 0.003950 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.023091 B = 7086.519011 C = 7944.475823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.165 3.835 3 H 0.109 0.891 4 C -0.628 4.628 5 S 2.421 3.579 6 O -0.934 6.934 7 O -0.939 6.939 8 C -0.627 4.627 9 C 0.123 3.877 10 N -1.011 6.011 11 S 2.596 3.404 12 O -0.945 6.945 13 O -0.954 6.954 14 C -0.624 4.624 15 C -0.096 4.096 16 C -0.004 4.004 17 C -0.529 4.529 18 H 0.075 0.925 19 C 0.069 3.931 20 N -0.899 5.899 21 Si 0.879 3.121 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.266 1.266 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.150 0.850 29 H 0.141 0.859 30 H 0.149 0.851 31 H 0.139 0.861 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.020 0.980 39 H 0.016 0.984 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.268 16.434 7.575 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.058 3.942 3 H 0.127 0.873 4 C -0.759 4.759 5 S 2.603 3.397 6 O -0.931 6.931 7 O -0.936 6.936 8 C -0.758 4.758 9 C -0.004 4.004 10 N -0.847 5.847 11 S 2.693 3.307 12 O -0.935 6.935 13 O -0.944 6.944 14 C -0.755 4.755 15 C -0.136 4.136 16 C -0.043 4.043 17 C -0.567 4.567 18 H 0.093 0.907 19 C -0.133 4.133 20 N -0.537 5.537 21 Si 0.706 3.294 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.191 1.191 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.134 0.866 28 H 0.168 0.832 29 H 0.159 0.841 30 H 0.167 0.833 31 H 0.157 0.843 32 H 0.145 0.855 33 H 0.118 0.882 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.038 0.962 39 H 0.034 0.966 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.542 16.963 7.357 23.523 hybrid contribution -0.241 -1.503 1.077 1.865 sum 14.301 15.460 8.434 22.686 Atomic orbital electron populations 1.22852 0.91006 1.05111 1.05630 1.20626 0.97055 0.96319 0.80227 0.87350 1.30814 1.26295 1.11462 1.07339 1.07923 0.78351 0.76036 0.77426 1.93597 1.77983 1.34901 1.86636 1.93620 1.78733 1.67911 1.53367 1.30645 1.11250 1.13231 1.20701 1.21139 0.78369 1.01810 0.99048 1.58109 1.17802 1.69408 1.39347 1.05669 0.73865 0.76791 0.74340 1.93639 1.53569 1.60253 1.86041 1.93551 1.69992 1.85970 1.44890 1.30838 1.11045 1.19825 1.13827 1.21322 0.95685 0.98777 0.97797 1.19535 0.97008 0.91709 0.96039 1.21105 1.24334 1.05031 1.06254 0.90709 1.25017 0.94499 0.96621 0.97160 1.69902 1.30269 1.15650 1.37866 0.86794 0.79667 0.78348 0.84543 1.20180 1.21181 1.19095 0.91905 0.90132 0.86622 0.83224 0.84101 0.83284 0.84260 0.85479 0.88171 0.85208 0.85005 0.90823 0.90871 0.96154 0.96594 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.56 7.60 37.16 0.28 -1.28 16 2 C 0.16 1.20 3.30 -67.90 -0.22 0.97 16 3 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.63 -3.61 5.81 37.25 0.22 -3.40 16 5 S 2.42 17.89 5.29 -107.50 -0.57 17.32 16 6 O -0.93 -9.41 18.02 -57.81 -1.04 -10.45 16 7 O -0.94 -10.47 18.10 -57.81 -1.05 -11.52 16 8 C -0.63 -3.50 6.55 37.25 0.24 -3.26 16 9 C 0.12 0.86 6.23 -4.01 -0.02 0.84 16 10 N -1.01 -8.73 3.03 -107.27 -0.32 -9.05 16 11 S 2.60 31.74 4.80 -107.50 -0.52 31.22 16 12 O -0.94 -13.41 13.64 -57.54 -0.78 -14.19 16 13 O -0.95 -14.17 16.19 -57.54 -0.93 -15.10 16 14 C -0.62 -7.79 5.83 37.15 0.22 -7.57 16 15 C -0.10 -1.72 5.16 -26.74 -0.14 -1.86 16 16 C 0.00 -0.09 4.04 -27.88 -0.11 -0.21 16 17 C -0.53 -14.54 9.66 -34.44 -0.33 -14.87 16 18 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 20 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 21 Si 0.88 20.82 27.47 -169.99 -4.67 16.15 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 25 H 0.06 0.56 4.34 -51.93 -0.23 0.33 16 26 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 27 H 0.12 1.14 6.28 -51.93 -0.33 0.82 16 28 H 0.15 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.14 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.15 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.14 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.13 0.93 6.47 -51.93 -0.34 0.60 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.13 1.32 8.14 -51.92 -0.42 0.90 16 35 H 0.13 1.34 6.28 -51.92 -0.33 1.01 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 39 H 0.02 0.34 7.57 -51.93 -0.39 -0.06 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -38.43 336.73 -9.80 -48.23 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -5.79 Total: -2.63 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 0.03 Total: -28.78 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.45 Total: -35.33 kcal Atomic # 8 Polarization: -47.46 SS G_CDS: -3.80 Total: -51.26 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Atomic # 16 Polarization: 49.63 SS G_CDS: -1.09 Total: 48.54 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -38.43 -9.80 -48.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352600716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.736 kcal (2) G-P(sol) polarization free energy of solvation -38.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds