Wall clock time and date at job start Fri Apr 10 2020 14:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46153 * 2 1 4 4 C 1.53180 * 109.46545 * 119.97129 * 2 1 3 5 5 S 1.81665 * 108.94878 * 178.26912 * 4 2 1 6 6 O 1.42102 * 108.64978 * 58.79358 * 5 4 2 7 7 O 1.42101 * 108.64951 * 190.08783 * 5 4 2 8 8 C 1.81661 * 101.38784 * 304.44188 * 5 4 2 9 9 C 1.53175 * 108.94957 * 55.56232 * 8 5 4 10 10 N 1.46379 * 109.46653 * 240.01704 * 2 1 3 11 11 S 1.65605 * 119.70111 * 355.41632 * 10 2 1 12 12 O 1.42096 * 104.27444 * 39.50617 * 11 10 2 13 13 O 1.42095 * 104.27874 * 167.36803 * 11 10 2 14 14 C 1.81402 * 104.44702 * 283.43972 * 11 10 2 15 15 C 1.52995 * 109.47280 * 180.02562 * 14 11 10 16 16 C 1.52997 * 109.47421 * 179.97438 * 15 14 11 17 17 C 1.50701 * 109.47431 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99666 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00197 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99998 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99927 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47340 * 89.99789 * 21 19 17 23 23 H 1.48503 * 109.46882 * 210.00136 * 21 19 17 24 24 H 1.48502 * 109.47187 * 329.99680 * 21 19 17 25 25 H 1.09005 * 109.46700 * 169.71562 * 1 2 3 26 26 H 1.08999 * 109.46989 * 289.71714 * 1 2 3 27 27 H 1.09001 * 109.47148 * 49.71975 * 1 2 3 28 28 H 1.09004 * 109.56095 * 298.11756 * 4 2 1 29 29 H 1.09010 * 109.55447 * 58.32599 * 4 2 1 30 30 H 1.09005 * 109.55365 * 175.40694 * 8 5 4 31 31 H 1.09000 * 109.55615 * 295.61222 * 8 5 4 32 32 H 1.09002 * 109.46350 * 181.72945 * 9 8 5 33 33 H 1.08999 * 109.46731 * 61.75710 * 9 8 5 34 34 H 1.09001 * 109.47393 * 300.00125 * 14 11 10 35 35 H 1.09001 * 109.47098 * 59.99390 * 14 11 10 36 36 H 1.08997 * 109.47247 * 299.99919 * 15 14 11 37 37 H 1.08993 * 109.47241 * 59.99678 * 15 14 11 38 38 H 1.09001 * 109.47417 * 300.00222 * 16 15 14 39 39 H 1.09006 * 109.46885 * 59.99872 * 16 15 14 40 40 H 0.96999 * 120.00069 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0405 -0.7215 1.2511 5 16 3.8564 -0.7584 1.2112 6 8 4.3370 0.5778 1.1586 7 8 4.3160 -1.6239 2.2403 8 6 4.1638 -1.5502 -0.3946 9 6 3.4508 -0.7496 -1.4886 10 7 2.0179 -0.6897 -1.1954 11 16 0.9394 -1.4147 -2.2220 12 8 -0.1571 -0.5123 -2.2725 13 8 1.7032 -1.7054 -3.3844 14 6 0.4651 -2.9457 -1.3725 15 6 -0.5406 -3.7149 -2.2313 16 6 -0.9402 -5.0066 -1.5152 17 6 -1.9313 -5.7640 -2.3608 18 1 -2.2452 -5.3638 -3.3136 19 6 -2.4382 -6.9671 -1.9177 20 7 -3.3035 -7.6278 -2.6555 21 14 -1.8969 -7.6582 -0.2687 22 1 -2.8066 -7.1661 0.7969 23 1 -1.9445 -9.1418 -0.3141 24 1 -0.5093 -7.2161 0.0218 25 1 -0.3633 -1.0112 -0.1835 26 1 -0.3633 0.3467 0.9674 27 1 -0.3633 0.6644 -0.7840 28 1 1.7057 -0.1892 2.1415 29 1 1.6536 -1.7405 1.2681 30 1 5.2354 -1.5667 -0.5940 31 1 3.7801 -2.5703 -0.3778 32 1 3.6044 -1.2350 -2.4524 33 1 3.8572 0.2612 -1.5223 34 1 1.3503 -3.5611 -1.2113 35 1 0.0119 -2.7026 -0.4114 36 1 -1.4259 -3.0999 -2.3928 37 1 -0.0870 -3.9581 -3.1921 38 1 -0.0548 -5.6216 -1.3540 39 1 -1.3938 -4.7638 -0.5541 40 1 -3.6604 -8.4741 -2.3436 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352600716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:43 Heat of formation + Delta-G solvation = -160.883450 kcal Electronic energy + Delta-G solvation = -24969.309997 eV Core-core repulsion = 21231.032377 eV Total energy + Delta-G solvation = -3738.277620 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.44461 -38.47055 -37.93501 -37.08370 -37.06107 -36.53559 -34.33352 -34.02377 -30.81680 -30.21515 -28.58822 -25.53279 -24.55202 -23.21437 -21.97028 -20.24507 -19.67851 -19.02975 -18.51291 -17.96877 -17.52684 -17.44121 -17.02854 -16.63920 -16.37017 -16.25038 -15.87576 -15.66789 -14.88644 -14.55618 -14.26461 -14.23051 -14.09055 -13.70908 -13.53861 -13.45111 -13.31236 -13.25146 -13.23576 -13.11721 -13.08087 -12.79913 -12.67141 -12.57919 -12.20929 -12.10217 -11.82504 -11.62689 -11.42841 -11.41021 -11.28717 -11.13628 -10.77729 -10.35858 -8.30091 -6.36067 -0.95821 -0.85028 1.36773 1.39202 1.48776 1.50286 1.72435 2.35766 2.66590 2.73606 2.97312 3.05512 3.11275 3.24929 3.36970 3.67755 3.81060 3.89221 3.96166 4.00986 4.17521 4.28418 4.35501 4.46324 4.57394 4.69211 4.75290 4.78166 4.84619 4.89029 4.95763 5.07540 5.34056 5.40960 5.46412 5.51613 5.62745 6.24862 6.72800 7.28850 8.86915 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016399 B = 0.003950 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.023091 B = 7086.519011 C = 7944.475823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.159 3.841 3 H 0.124 0.876 4 C -0.621 4.621 5 S 2.428 3.572 6 O -0.967 6.967 7 O -0.981 6.981 8 C -0.619 4.619 9 C 0.112 3.888 10 N -1.003 6.003 11 S 2.610 3.390 12 O -0.970 6.970 13 O -0.985 6.985 14 C -0.625 4.625 15 C -0.101 4.101 16 C -0.006 4.006 17 C -0.544 4.544 18 H 0.029 0.971 19 C 0.002 3.998 20 N -0.953 5.953 21 Si 0.952 3.048 22 H -0.264 1.264 23 H -0.288 1.288 24 H -0.236 1.236 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.175 0.825 29 H 0.161 0.839 30 H 0.171 0.829 31 H 0.158 0.842 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.980 16.875 10.176 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.053 3.947 3 H 0.141 0.859 4 C -0.753 4.753 5 S 2.614 3.386 6 O -0.965 6.965 7 O -0.978 6.978 8 C -0.752 4.752 9 C -0.014 4.014 10 N -0.840 5.840 11 S 2.708 3.292 12 O -0.960 6.960 13 O -0.975 6.975 14 C -0.755 4.755 15 C -0.141 4.141 16 C -0.045 4.045 17 C -0.582 4.582 18 H 0.048 0.952 19 C -0.195 4.195 20 N -0.593 5.593 21 Si 0.775 3.225 22 H -0.189 1.189 23 H -0.214 1.214 24 H -0.159 1.159 25 H 0.076 0.924 26 H 0.124 0.876 27 H 0.114 0.886 28 H 0.192 0.808 29 H 0.179 0.821 30 H 0.189 0.811 31 H 0.176 0.824 32 H 0.143 0.857 33 H 0.134 0.866 34 H 0.178 0.822 35 H 0.179 0.821 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.284 17.436 9.967 25.856 hybrid contribution -0.830 -1.571 0.144 1.782 sum 15.454 15.865 10.111 24.347 Atomic orbital electron populations 1.22886 0.91693 1.04424 1.06398 1.20817 0.96548 0.97282 0.80047 0.85856 1.30774 1.23997 1.13023 1.07520 1.07459 0.78863 0.74853 0.77393 1.93554 1.79189 1.36490 1.87233 1.93572 1.80071 1.68569 1.55571 1.30597 1.12796 1.13642 1.18122 1.21390 0.77344 1.03196 0.99458 1.57811 1.17988 1.68763 1.39469 1.04980 0.73549 0.76496 0.74144 1.93628 1.54950 1.60875 1.86549 1.93511 1.70672 1.86402 1.46922 1.30817 1.10935 1.19783 1.14005 1.21146 0.97046 0.97725 0.98135 1.19520 0.95906 0.93064 0.95970 1.21566 1.25414 1.05706 1.05475 0.95225 1.26096 0.94474 0.97070 1.01865 1.70082 1.32301 1.16423 1.40534 0.85634 0.80856 0.77175 0.78849 1.18935 1.21409 1.15921 0.92420 0.87643 0.88598 0.80776 0.82097 0.81090 0.82379 0.85695 0.86561 0.82230 0.82104 0.91742 0.92005 0.94883 0.94905 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.71 7.60 71.98 0.55 -2.16 16 2 C 0.16 1.79 3.30 45.08 0.15 1.94 16 3 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.62 -4.64 5.81 72.04 0.42 -4.22 16 5 S 2.43 29.21 5.29 -56.49 -0.30 28.91 16 6 O -0.97 -17.60 18.02 -127.39 -2.30 -19.89 16 7 O -0.98 -19.78 18.10 -127.39 -2.31 -22.09 16 8 C -0.62 -4.74 6.55 72.04 0.47 -4.27 16 9 C 0.11 1.24 6.23 86.46 0.54 1.78 16 10 N -1.00 -14.46 3.03 -493.28 -1.49 -15.95 16 11 S 2.61 59.39 4.80 -56.49 -0.27 59.12 16 12 O -0.97 -26.79 13.64 -127.65 -1.74 -28.54 16 13 O -0.98 -28.33 16.19 -127.65 -2.07 -30.40 16 14 C -0.62 -13.68 5.83 71.98 0.42 -13.26 16 15 C -0.10 -3.51 5.16 30.59 0.16 -3.36 16 16 C -0.01 -0.26 4.04 29.85 0.12 -0.14 16 17 C -0.54 -30.41 9.66 25.60 0.25 -30.16 16 18 H 0.03 1.85 7.99 -2.91 -0.02 1.82 16 19 C 0.00 0.09 5.47 84.65 0.46 0.56 16 20 N -0.95 -59.08 13.96 21.45 0.30 -58.78 16 21 Si 0.95 41.81 27.47 68.60 1.88 43.70 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.24 -9.16 6.54 99.48 0.65 -8.51 16 25 H 0.06 0.85 4.34 -2.38 -0.01 0.84 16 26 H 0.10 0.90 8.11 -2.39 -0.02 0.88 16 27 H 0.10 1.77 6.28 -2.39 -0.01 1.75 16 28 H 0.17 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.16 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.17 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.16 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.13 1.54 6.47 -2.39 -0.02 1.52 16 33 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.16 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.16 2.57 6.28 -2.39 -0.02 2.55 16 36 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 39 H 0.03 1.28 7.57 -2.38 -0.02 1.26 16 40 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -86.48 336.73 -3.77 -90.25 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 0.99 Total: 6.97 kcal Atomic # 6 Polarization: -56.82 SS G_CDS: 3.53 Total: -53.28 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -1.19 Total: -74.74 kcal Atomic # 8 Polarization: -92.51 SS G_CDS: -8.41 Total: -100.92 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.88 Total: 43.70 kcal Atomic # 16 Polarization: 88.60 SS G_CDS: -0.57 Total: 88.03 kcal Total: -86.48 -3.77 -90.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352600716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.630 kcal (2) G-P(sol) polarization free energy of solvation -86.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds