Wall clock time and date at job start Fri Apr 10 2020 14:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47172 * 319.85731 * 3 2 1 5 5 C 1.36940 * 120.00070 * 274.99777 * 4 3 2 6 6 H 1.07993 * 120.00220 * 196.03389 * 5 4 3 7 7 C 1.38815 * 119.99910 * 16.03633 * 5 4 3 8 8 N 1.31622 * 119.99636 * 353.23280 * 7 5 4 9 9 Si 1.86798 * 120.00053 * 173.23653 * 7 5 4 10 10 H 1.48498 * 109.47028 * 90.00060 * 9 7 5 11 11 H 1.48495 * 109.47038 * 209.99858 * 9 7 5 12 12 H 1.48500 * 109.47081 * 329.99812 * 9 7 5 13 13 S 1.65597 * 120.00192 * 94.99889 * 4 3 2 14 14 O 1.42101 * 106.40373 * 29.61836 * 13 4 3 15 15 O 1.42098 * 106.40474 * 162.53744 * 13 4 3 16 16 C 1.76206 * 107.21933 * 276.08040 * 13 4 3 17 17 C 1.38151 * 120.00149 * 113.01530 * 16 13 4 18 18 C 1.38673 * 119.99597 * 179.77306 * 17 16 13 19 19 O 1.35990 * 119.99861 * 180.25123 * 18 17 16 20 20 C 1.42890 * 117.00230 * 180.27152 * 19 18 17 21 21 C 1.38711 * 120.00359 * 0.52216 * 18 17 16 22 22 C 1.38111 * 120.00103 * 359.73082 * 21 18 17 23 23 C 1.38675 * 119.99726 * 293.28881 * 16 13 4 24 24 O 1.35990 * 119.99947 * 359.97438 * 23 16 13 25 25 C 1.42903 * 116.99651 * 179.97438 * 24 23 16 26 26 H 4.40642 * 5.51332 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.47201 * 199.85265 * 3 2 1 28 28 H 1.09003 * 109.46812 * 79.85778 * 3 2 1 29 29 H 0.97000 * 119.99412 * 179.97438 * 8 7 5 30 30 H 1.08000 * 119.99896 * 359.97438 * 17 16 13 31 31 H 1.09003 * 109.47545 * 300.00019 * 20 19 18 32 32 H 1.09003 * 109.47287 * 60.00039 * 20 19 18 33 33 H 1.08997 * 109.47666 * 179.97438 * 20 19 18 34 34 H 1.08006 * 120.00128 * 179.70239 * 21 18 17 35 35 H 1.07995 * 120.00071 * 179.97438 * 22 21 18 36 36 H 1.08996 * 109.47144 * 60.00127 * 25 24 23 37 37 H 1.08997 * 109.46823 * 180.02562 * 25 24 23 38 38 H 1.09004 * 109.47307 * 299.99773 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0549 0.8904 5 6 3.2656 -0.8130 2.2319 6 1 3.8564 -1.4770 2.8453 7 6 2.6385 0.2857 2.8034 8 7 2.0302 1.1676 2.0388 9 14 2.6580 0.5125 4.6575 10 1 3.8524 1.3045 5.0467 11 1 1.4288 1.2299 5.0813 12 1 2.7084 -0.8164 5.3182 13 16 3.5293 -2.5407 0.2747 14 8 3.9640 -2.3195 -1.0599 15 8 4.3312 -3.1821 1.2570 16 6 2.0378 -3.4723 0.1642 17 6 1.5307 -3.8202 -1.0728 18 6 0.3593 -4.5574 -1.1596 19 8 -0.1371 -4.9043 -2.3772 20 6 -1.3506 -5.6587 -2.3921 21 6 -0.3090 -4.9362 -0.0046 22 6 0.1951 -4.5839 1.2320 23 6 1.3699 -3.8514 1.3189 24 8 1.8664 -3.5045 2.5365 25 6 1.1264 -3.9280 3.6834 26 1 -1.0499 -0.0001 0.0003 27 1 3.0089 0.9674 0.3490 28 1 3.0094 -0.1802 -1.0117 29 1 1.5917 1.9351 2.4382 30 1 2.0482 -3.5209 -1.9722 31 1 -1.2015 -6.5974 -1.8584 32 1 -2.1405 -5.0860 -1.9061 33 1 -1.6358 -5.8679 -3.4230 34 1 -1.2239 -5.5063 -0.0724 35 1 -0.3254 -4.8785 2.1312 36 1 1.0617 -5.0160 3.6926 37 1 1.6303 -3.5860 4.5874 38 1 0.1228 -3.5045 3.6449 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490853544.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:52 Heat of formation + Delta-G solvation = -52.788824 kcal Electronic energy + Delta-G solvation = -26895.264908 eV Core-core repulsion = 23026.230671 eV Total energy + Delta-G solvation = -3869.034236 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.38814 -39.94775 -38.03707 -37.80789 -37.20826 -36.39213 -33.61854 -32.85411 -32.39939 -30.70580 -28.32884 -28.24710 -27.76844 -25.51398 -24.01966 -23.06052 -20.47473 -19.91444 -19.45763 -18.69965 -18.46621 -18.17559 -17.72794 -16.88816 -16.78764 -16.41386 -16.31723 -16.05581 -15.69864 -15.33902 -15.16126 -14.95539 -14.45232 -14.23084 -13.76177 -13.68623 -13.39983 -13.17283 -13.01968 -12.78847 -12.74038 -12.58656 -12.55721 -12.46503 -12.25281 -12.21611 -11.93455 -11.55967 -11.40110 -11.27439 -10.88874 -10.53734 -10.34964 -9.98452 -8.81096 -8.16926 -5.77549 -0.24904 -0.00199 0.39679 1.52728 1.54506 1.64199 2.05862 2.30132 2.37679 2.46690 2.48704 2.51030 2.89165 3.04911 3.27914 3.65025 3.79429 3.86718 3.98206 4.20052 4.25669 4.36106 4.40491 4.40863 4.44956 4.62318 4.66864 4.72211 4.73693 4.89604 5.06006 5.10896 5.16188 5.38730 5.45442 5.49534 5.71297 6.30491 6.49325 6.52601 6.88773 7.22674 7.32591 8.69502 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.005959 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.792736 B = 4697.313278 C = 4963.650694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.132 4.132 3 C 0.238 3.762 4 N -0.811 5.811 5 C -0.255 4.255 6 H 0.109 0.891 7 C 0.002 3.998 8 N -0.851 5.851 9 Si 0.976 3.024 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.259 1.259 13 S 2.567 3.433 14 O -1.017 7.017 15 O -1.000 7.000 16 C -0.683 4.683 17 C -0.051 4.051 18 C 0.061 3.939 19 O -0.337 6.337 20 C 0.016 3.984 21 C -0.118 4.118 22 C -0.191 4.191 23 C 0.175 3.825 24 O -0.317 6.317 25 C 0.016 3.984 26 H 0.226 0.774 27 H 0.132 0.868 28 H 0.072 0.928 29 H 0.274 0.726 30 H 0.133 0.867 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.174 0.826 35 H 0.168 0.832 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.880 -8.564 0.310 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.135 4.135 3 C 0.113 3.887 4 N -0.635 5.635 5 C -0.399 4.399 6 H 0.127 0.873 7 C -0.205 4.205 8 N -0.492 5.492 9 Si 0.799 3.201 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.183 1.183 13 S 2.667 3.333 14 O -1.007 7.007 15 O -0.990 6.990 16 C -0.765 4.765 17 C -0.071 4.071 18 C 0.016 3.984 19 O -0.252 6.252 20 C -0.079 4.079 21 C -0.136 4.136 22 C -0.210 4.210 23 C 0.127 3.873 24 O -0.229 6.229 25 C -0.078 4.078 26 H 0.243 0.757 27 H 0.149 0.851 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.150 0.850 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.191 0.809 35 H 0.185 0.815 36 H 0.095 0.905 37 H 0.127 0.873 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.849 -8.758 -0.215 13.181 hybrid contribution -1.213 -0.108 0.935 1.535 sum -11.062 -8.866 0.720 14.195 Atomic orbital electron populations 1.24908 0.96137 1.02689 1.05315 1.23733 0.95152 0.98282 0.96307 1.18535 0.84308 0.94388 0.91505 1.54129 1.74799 1.19216 1.15316 1.19904 1.25697 1.10144 0.84159 0.87345 1.26156 0.94696 0.96022 1.03633 1.70115 1.32209 1.11099 1.35809 0.85180 0.77894 0.79029 0.77961 1.19780 1.20391 1.18333 1.09288 0.78198 0.73653 0.72160 1.93316 1.82695 1.85820 1.38870 1.93326 1.69199 1.76093 1.60353 1.30935 1.28434 1.21142 0.95995 1.19968 0.94734 0.96506 0.95853 1.18932 0.94767 0.99202 0.85526 1.86071 1.42431 1.70969 1.25695 1.23389 0.83622 0.95089 1.05756 1.21538 1.00963 1.00541 0.90590 1.21465 0.96434 1.02977 1.00120 1.18506 0.92080 0.92098 0.84647 1.86343 1.50797 1.73136 1.12626 1.23387 0.97364 1.00997 0.86093 0.75749 0.85109 0.90989 0.91471 0.84955 0.91356 0.91586 0.86172 0.80897 0.81482 0.90527 0.87341 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.35 19.25 74.32 1.43 -9.92 16 2 C -0.13 -6.14 11.28 31.13 0.35 -5.79 16 3 C 0.24 11.41 5.48 84.58 0.46 11.87 16 4 N -0.81 -40.97 2.89 -352.52 -1.02 -41.99 16 5 C -0.26 -12.96 8.67 84.03 0.73 -12.23 16 6 H 0.11 5.66 7.02 -2.91 -0.02 5.64 16 7 C 0.00 0.10 5.38 84.86 0.46 0.56 16 8 N -0.85 -40.88 8.12 21.65 0.18 -40.70 16 9 Si 0.98 37.86 29.56 68.60 2.03 39.89 16 10 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 11 H -0.28 -10.55 7.11 99.48 0.71 -9.85 16 12 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 13 S 2.57 130.69 5.26 -56.49 -0.30 130.39 16 14 O -1.02 -53.82 15.66 -128.00 -2.00 -55.82 16 15 O -1.00 -55.10 15.84 -122.34 -1.94 -57.04 16 16 C -0.68 -30.83 5.92 22.35 0.13 -30.70 16 17 C -0.05 -2.11 9.48 22.35 0.21 -1.90 16 18 C 0.06 2.07 6.68 22.49 0.15 2.22 16 19 O -0.34 -9.91 10.50 -93.43 -0.98 -10.89 16 20 C 0.02 0.26 9.81 113.37 1.11 1.38 16 21 C -0.12 -3.27 9.03 22.35 0.20 -3.07 16 22 C -0.19 -5.85 9.03 22.35 0.20 -5.64 16 23 C 0.17 7.06 6.63 22.49 0.15 7.21 16 24 O -0.32 -13.00 8.34 -82.06 -0.68 -13.69 16 25 C 0.02 0.44 9.81 113.37 1.11 1.55 16 26 H 0.23 7.46 7.80 -4.42 -0.03 7.43 16 27 H 0.13 6.40 6.15 -2.39 -0.01 6.38 16 28 H 0.07 3.32 7.00 -2.39 -0.02 3.30 16 29 H 0.27 12.51 8.31 -92.71 -0.77 11.74 16 30 H 0.13 5.64 7.33 -2.91 -0.02 5.61 16 31 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 32 H 0.07 0.94 7.66 -2.39 -0.02 0.93 16 33 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.17 3.11 6.29 -2.91 -0.02 3.10 16 35 H 0.17 3.72 6.29 -2.91 -0.02 3.70 16 36 H 0.08 1.68 7.66 -2.39 -0.02 1.66 16 37 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.07 1.64 7.66 -2.38 -0.02 1.62 16 Total: -1.00 -69.69 337.09 3.08 -66.61 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 1.09 Total: 27.70 kcal Atomic # 6 Polarization: -51.16 SS G_CDS: 6.70 Total: -44.45 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -0.84 Total: -82.69 kcal Atomic # 8 Polarization: -131.83 SS G_CDS: -5.61 Total: -137.44 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Atomic # 16 Polarization: 130.69 SS G_CDS: -0.30 Total: 130.39 kcal Total: -69.69 3.08 -66.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490853544.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.819 kcal (2) G-P(sol) polarization free energy of solvation -69.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds