Wall clock time and date at job start Fri Apr 10 2020 14:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81398 * 109.46955 * 2 1 4 4 O 1.42100 * 109.47161 * 289.06059 * 3 2 1 5 5 C 1.76195 * 102.99942 * 180.02562 * 3 2 1 6 6 C 1.37966 * 120.07954 * 95.00733 * 5 3 2 7 7 C 1.38337 * 120.15571 * 179.97438 * 6 5 3 8 8 C 1.38393 * 120.30240 * 359.97438 * 7 6 5 9 9 C 1.37925 * 120.14992 * 359.97438 * 8 7 6 10 10 C 1.39610 * 120.07887 * 275.23497 * 5 3 2 11 11 C 1.47733 * 120.14960 * 0.04160 * 10 5 3 12 12 O 1.21468 * 119.99565 * 0.26149 * 11 10 5 13 13 O 1.34709 * 120.00010 * 180.25294 * 11 10 5 14 14 C 1.45196 * 116.99760 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47107 * 180.02562 * 14 13 11 16 16 O 1.21291 * 120.00161 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00131 * 180.02562 * 15 14 13 18 18 C 1.37105 * 119.99687 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00202 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99428 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00318 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99676 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47281 * 59.99815 * 22 20 18 24 24 H 1.48502 * 109.46960 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47014 * 300.00128 * 22 20 18 26 26 H 1.09007 * 109.46647 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47175 * 299.99412 * 1 2 3 28 28 H 1.08998 * 109.47200 * 60.00221 * 1 2 3 29 29 H 1.09003 * 109.46815 * 240.00890 * 2 1 3 30 30 H 1.09001 * 109.47577 * 120.00441 * 2 1 3 31 31 H 1.08004 * 119.92192 * 359.97438 * 6 5 3 32 32 H 1.08006 * 119.85295 * 179.97438 * 7 6 5 33 33 H 1.07999 * 119.92655 * 180.02562 * 8 7 6 34 34 H 1.08002 * 120.07400 * 180.02562 * 9 8 7 35 35 H 1.08996 * 109.47691 * 300.00441 * 14 13 11 36 36 H 1.09001 * 109.46915 * 60.00713 * 14 13 11 37 37 H 0.96995 * 119.99681 * 359.97438 * 17 15 14 38 38 H 0.96994 * 120.00354 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8800 2.3027 -1.2663 5 6 3.8854 1.5117 -0.0008 6 6 4.5837 1.5375 -1.1904 7 6 5.9583 1.3823 -1.1928 8 6 6.6426 1.2008 -0.0036 9 6 5.9572 1.1740 1.1930 10 6 4.5687 1.3232 1.2020 11 6 3.8271 1.2885 2.4792 12 8 2.6195 1.4194 2.4839 13 8 4.4900 1.1114 3.6384 14 6 3.6968 1.0873 4.8543 15 6 4.6027 0.8821 6.0410 16 8 5.7992 0.7679 5.8782 17 7 4.0833 0.8254 7.2835 18 6 4.9076 0.6392 8.3631 19 1 5.9729 0.5376 8.2180 20 6 4.3720 0.5803 9.6440 21 7 3.0757 0.7035 9.8205 22 14 5.4949 0.3259 11.1149 23 1 6.4760 1.4384 11.1871 24 1 4.6836 0.3006 12.3585 25 1 6.2180 -0.9629 10.9687 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 4.0559 1.6792 -2.1219 32 1 6.5001 1.4029 -2.1269 33 1 7.7159 1.0807 -0.0125 34 1 6.4925 1.0327 2.1203 35 1 3.1670 2.0338 4.9615 36 1 2.9760 0.2714 4.8017 37 1 3.1265 0.9171 7.4138 38 1 2.7018 0.6620 10.7145 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731238952.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:59 Heat of formation + Delta-G solvation = -127.338314 kcal Electronic energy + Delta-G solvation = -24504.052316 eV Core-core repulsion = 20631.785371 eV Total energy + Delta-G solvation = -3872.266945 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.71563 -39.02505 -38.12115 -36.39569 -35.67384 -34.04977 -32.84016 -31.86317 -31.43464 -31.38872 -28.46283 -25.10206 -24.17200 -23.83257 -22.88869 -21.17997 -19.66323 -18.51515 -18.12912 -17.78841 -16.96191 -16.49188 -16.41895 -15.79752 -15.43494 -15.24315 -14.86620 -14.75515 -14.56970 -14.29318 -14.17720 -13.96808 -13.26545 -13.11179 -12.89529 -12.44401 -12.38668 -12.34973 -12.10663 -11.95751 -11.72354 -11.64974 -11.28769 -11.14584 -10.72408 -10.54528 -10.51898 -10.33053 -10.24671 -9.63458 -9.57435 -9.35363 -8.58291 -8.20827 -8.12403 -6.53716 -3.95903 0.19256 0.81363 1.67984 2.32838 2.45460 2.62236 3.12706 3.20888 3.25070 3.41637 3.69186 3.78075 4.06072 4.35869 4.59206 4.64685 4.80863 4.84552 4.88945 5.01620 5.11141 5.14188 5.26078 5.27369 5.43089 5.62562 5.63024 5.65811 5.77158 5.82803 5.88036 5.91423 5.98872 6.05513 6.39152 6.47924 7.44142 7.58900 7.89869 8.43870 9.03166 9.34863 9.84389 10.63257 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019399 B = 0.002803 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.003482 B = 9985.661703 C =11170.696180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.453 4.453 3 S 1.366 4.634 4 O -0.874 6.874 5 C -0.409 4.409 6 C -0.069 4.069 7 C -0.102 4.102 8 C -0.100 4.100 9 C -0.070 4.070 10 C -0.055 4.055 11 C 0.503 3.497 12 O -0.503 6.503 13 O -0.313 6.313 14 C 0.059 3.941 15 C 0.436 3.564 16 O -0.577 6.577 17 N -0.551 5.551 18 C -0.304 4.304 19 H 0.106 0.894 20 C 0.027 3.973 21 N -0.896 5.896 22 Si 0.934 3.066 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.272 1.272 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.153 0.847 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.395 0.605 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.668 0.334 -17.566 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.589 4.589 3 S 1.563 4.437 4 O -0.869 6.869 5 C -0.504 4.504 6 C -0.088 4.088 7 C -0.121 4.121 8 C -0.118 4.118 9 C -0.089 4.089 10 C -0.057 4.057 11 C 0.348 3.652 12 O -0.395 6.395 13 O -0.227 6.227 14 C -0.018 4.018 15 C 0.221 3.779 16 O -0.461 6.461 17 N -0.188 5.188 18 C -0.433 4.433 19 H 0.123 0.877 20 C -0.176 4.176 21 N -0.536 5.536 22 Si 0.760 3.240 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.198 1.198 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.134 0.866 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.170 0.830 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.229 0.771 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.845 1.120 -17.456 17.589 hybrid contribution 0.796 -1.352 -0.790 1.756 sum -1.049 -0.231 -18.246 18.278 Atomic orbital electron populations 1.21334 0.91895 1.03118 1.02595 1.27589 1.03906 1.20229 1.07221 1.71984 0.80151 0.86978 1.04635 1.92902 1.79470 1.67145 1.47407 1.27969 1.20568 1.06588 0.95282 1.21082 0.94606 0.95757 0.97358 1.21551 0.94385 0.97395 0.98755 1.21410 1.00747 0.97586 0.92067 1.21809 0.92979 0.94297 0.99809 1.18704 0.93894 1.04004 0.89109 1.21234 0.85914 0.73139 0.84898 1.90727 1.14727 1.46728 1.87272 1.86594 1.40581 1.81266 1.14261 1.22877 0.93552 1.03993 0.81416 1.19296 0.88762 0.86235 0.83611 1.90565 1.15231 1.55373 1.84977 1.41689 1.10471 1.62565 1.04043 1.19674 0.92733 1.47159 0.83756 0.87658 1.25302 0.96365 0.96853 0.99090 1.69594 1.10787 1.49096 1.24155 0.85869 0.79352 0.79254 0.79490 1.19738 1.20857 1.19758 0.91594 0.90920 0.92520 0.90036 0.86557 0.84563 0.85079 0.84538 0.82957 0.88836 0.88984 0.77089 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 9.92 37.16 0.37 -0.86 16 2 C -0.45 -4.80 6.43 37.16 0.24 -4.56 16 3 S 1.37 16.37 10.53 -107.50 -1.13 15.24 16 4 O -0.87 -14.01 16.78 -35.23 -0.59 -14.61 16 5 C -0.41 -5.03 5.66 -39.17 -0.22 -5.25 16 6 C -0.07 -0.80 9.44 -39.64 -0.37 -1.17 16 7 C -0.10 -0.95 10.04 -39.49 -0.40 -1.35 16 8 C -0.10 -0.94 10.03 -39.64 -0.40 -1.33 16 9 C -0.07 -0.80 9.62 -39.17 -0.38 -1.18 16 10 C -0.05 -0.69 5.87 -104.98 -0.62 -1.30 16 11 C 0.50 6.86 7.88 34.61 0.27 7.14 16 12 O -0.50 -6.49 13.00 -19.24 -0.25 -6.74 16 13 O -0.31 -5.08 9.01 -47.19 -0.43 -5.51 16 14 C 0.06 0.97 5.95 36.01 0.21 1.19 16 15 C 0.44 9.71 7.86 -10.98 -0.09 9.63 16 16 O -0.58 -15.03 16.08 -14.11 -0.23 -15.26 16 17 N -0.55 -13.07 5.29 -10.96 -0.06 -13.13 16 18 C -0.30 -8.03 9.68 -14.93 -0.14 -8.18 16 19 H 0.11 2.91 7.16 -52.49 -0.38 2.53 16 20 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 21 N -0.90 -23.12 13.05 55.50 0.72 -22.40 16 22 Si 0.93 20.02 29.55 -169.99 -5.02 15.00 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 30 H 0.12 1.17 7.78 -51.92 -0.40 0.77 16 31 H 0.14 1.59 7.34 -52.48 -0.39 1.21 16 32 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.15 1.76 7.61 -52.49 -0.40 1.36 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.40 8.82 7.90 -40.82 -0.32 8.50 16 38 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 349.55 15.07 5.27 5.27 Total: -1.00 -33.05 349.55 -7.73 -40.78 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -4.40 Total: 8.00 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -1.62 Total: -6.65 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.67 Total: -35.53 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -1.49 Total: -42.11 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 16.37 SS G_CDS: -1.13 Total: 15.24 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.05 -7.73 -40.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731238952.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.558 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds