Wall clock time and date at job start Fri Apr 10 2020 14:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81398 * 109.46955 * 2 1 4 4 O 1.42100 * 109.47161 * 289.06059 * 3 2 1 5 5 C 1.76195 * 102.99942 * 180.02562 * 3 2 1 6 6 C 1.37966 * 120.07954 * 95.00733 * 5 3 2 7 7 C 1.38337 * 120.15571 * 179.97438 * 6 5 3 8 8 C 1.38393 * 120.30240 * 359.97438 * 7 6 5 9 9 C 1.37925 * 120.14992 * 359.97438 * 8 7 6 10 10 C 1.39610 * 120.07887 * 275.23497 * 5 3 2 11 11 C 1.47733 * 120.14960 * 0.04160 * 10 5 3 12 12 O 1.21468 * 119.99565 * 0.26149 * 11 10 5 13 13 O 1.34709 * 120.00010 * 180.25294 * 11 10 5 14 14 C 1.45196 * 116.99760 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47107 * 180.02562 * 14 13 11 16 16 O 1.21291 * 120.00161 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00131 * 180.02562 * 15 14 13 18 18 C 1.37105 * 119.99687 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00202 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99428 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00318 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99676 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47281 * 59.99815 * 22 20 18 24 24 H 1.48502 * 109.46960 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47014 * 300.00128 * 22 20 18 26 26 H 1.09007 * 109.46647 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47175 * 299.99412 * 1 2 3 28 28 H 1.08998 * 109.47200 * 60.00221 * 1 2 3 29 29 H 1.09003 * 109.46815 * 240.00890 * 2 1 3 30 30 H 1.09001 * 109.47577 * 120.00441 * 2 1 3 31 31 H 1.08004 * 119.92192 * 359.97438 * 6 5 3 32 32 H 1.08006 * 119.85295 * 179.97438 * 7 6 5 33 33 H 1.07999 * 119.92655 * 180.02562 * 8 7 6 34 34 H 1.08002 * 120.07400 * 180.02562 * 9 8 7 35 35 H 1.08996 * 109.47691 * 300.00441 * 14 13 11 36 36 H 1.09001 * 109.46915 * 60.00713 * 14 13 11 37 37 H 0.96995 * 119.99681 * 359.97438 * 17 15 14 38 38 H 0.96994 * 120.00354 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8800 2.3027 -1.2663 5 6 3.8854 1.5117 -0.0008 6 6 4.5837 1.5375 -1.1904 7 6 5.9583 1.3823 -1.1928 8 6 6.6426 1.2008 -0.0036 9 6 5.9572 1.1740 1.1930 10 6 4.5687 1.3232 1.2020 11 6 3.8271 1.2885 2.4792 12 8 2.6195 1.4194 2.4839 13 8 4.4900 1.1114 3.6384 14 6 3.6968 1.0873 4.8543 15 6 4.6027 0.8821 6.0410 16 8 5.7992 0.7679 5.8782 17 7 4.0833 0.8254 7.2835 18 6 4.9076 0.6392 8.3631 19 1 5.9729 0.5376 8.2180 20 6 4.3720 0.5803 9.6440 21 7 3.0757 0.7035 9.8205 22 14 5.4949 0.3259 11.1149 23 1 6.4760 1.4384 11.1871 24 1 4.6836 0.3006 12.3585 25 1 6.2180 -0.9629 10.9687 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 4.0559 1.6792 -2.1219 32 1 6.5001 1.4029 -2.1269 33 1 7.7159 1.0807 -0.0125 34 1 6.4925 1.0327 2.1203 35 1 3.1670 2.0338 4.9615 36 1 2.9760 0.2714 4.8017 37 1 3.1265 0.9171 7.4138 38 1 2.7018 0.6620 10.7145 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731238952.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:59 Heat of formation + Delta-G solvation = -148.738917 kcal Electronic energy + Delta-G solvation = -24504.980316 eV Core-core repulsion = 20631.785371 eV Total energy + Delta-G solvation = -3873.194945 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.81283 -40.21063 -39.60768 -37.60685 -36.77046 -35.96433 -33.64683 -33.36058 -32.73313 -32.27316 -29.91939 -26.72063 -25.35678 -24.67768 -23.75050 -22.22388 -21.36058 -20.01509 -19.53064 -18.80142 -18.07374 -17.68650 -17.67633 -17.17755 -16.52656 -16.36507 -16.17395 -15.82426 -15.75079 -15.54352 -15.48901 -15.23595 -14.56999 -14.27383 -13.87358 -13.63983 -13.62749 -13.50414 -13.34190 -13.12278 -12.89735 -12.79028 -12.56275 -12.43170 -12.12740 -12.10347 -11.78805 -11.77318 -11.51000 -11.21673 -10.44214 -10.42122 -10.23098 -10.05244 -9.16969 -8.47167 -5.96860 -0.70793 -0.05645 0.75532 1.27942 1.34704 1.41797 1.47523 1.57758 1.69191 1.95333 2.33088 2.53225 2.82876 3.05436 3.19418 3.52261 3.71019 3.92785 3.99616 4.06794 4.11164 4.21575 4.29164 4.30925 4.34288 4.45455 4.51620 4.74005 4.89561 4.96583 4.97334 5.09175 5.18268 5.22000 5.26869 5.42380 5.66910 5.95005 6.46167 6.58268 7.09358 7.47847 8.01671 8.69404 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019399 B = 0.002803 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.003482 B = 9985.661703 C =11170.696180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.448 4.448 3 S 1.376 4.624 4 O -0.919 6.919 5 C -0.417 4.417 6 C -0.085 4.085 7 C -0.091 4.091 8 C -0.092 4.092 9 C -0.078 4.078 10 C -0.068 4.068 11 C 0.506 3.494 12 O -0.497 6.497 13 O -0.331 6.331 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.619 6.619 17 N -0.558 5.558 18 C -0.337 4.337 19 H 0.084 0.916 20 C -0.007 4.007 21 N -0.914 5.914 22 Si 0.993 3.007 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.271 1.271 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.148 0.852 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.401 0.599 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.378 -0.065 -17.936 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.585 4.585 3 S 1.575 4.425 4 O -0.915 6.915 5 C -0.513 4.513 6 C -0.104 4.104 7 C -0.109 4.109 8 C -0.110 4.110 9 C -0.097 4.097 10 C -0.070 4.070 11 C 0.351 3.649 12 O -0.388 6.388 13 O -0.246 6.246 14 C -0.008 4.008 15 C 0.223 3.777 16 O -0.506 6.506 17 N -0.196 5.196 18 C -0.466 4.466 19 H 0.102 0.898 20 C -0.208 4.208 21 N -0.554 5.554 22 Si 0.816 3.184 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.196 1.196 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.143 0.857 31 H 0.149 0.851 32 H 0.182 0.818 33 H 0.187 0.813 34 H 0.166 0.834 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.236 0.764 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.597 0.740 -17.843 17.930 hybrid contribution 0.754 -1.269 -0.764 1.662 sum -0.843 -0.529 -18.607 18.634 Atomic orbital electron populations 1.21438 0.90858 1.04183 1.03040 1.27531 1.04879 1.18670 1.07468 1.71390 0.80052 0.87728 1.03328 1.92837 1.80581 1.69149 1.48941 1.27835 1.20332 1.07543 0.95619 1.21219 0.95863 0.96489 0.96816 1.21917 0.93499 0.95270 1.00252 1.21772 1.02287 0.95889 0.91038 1.21930 0.92645 0.94485 1.00674 1.18633 0.94414 1.05608 0.88372 1.21377 0.86079 0.72979 0.84463 1.90719 1.14467 1.46524 1.87109 1.86576 1.41293 1.82034 1.14705 1.22699 0.92114 1.06400 0.79607 1.20209 0.88934 0.83985 0.84585 1.90533 1.17521 1.56715 1.85849 1.41717 1.10512 1.63070 1.04301 1.19656 0.92346 1.49263 0.85366 0.89849 1.26033 0.97748 0.96009 1.00962 1.69649 1.11750 1.49027 1.24989 0.84988 0.77748 0.79008 0.76632 1.19616 1.19600 1.19608 0.90198 0.89525 0.93163 0.90341 0.85739 0.85139 0.81761 0.81328 0.83433 0.86237 0.86291 0.76396 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.92 71.98 0.71 -1.67 16 2 C -0.45 -9.05 6.43 71.98 0.46 -8.59 16 3 S 1.38 32.61 10.53 -56.49 -0.59 32.02 16 4 O -0.92 -29.90 16.78 -148.98 -2.50 -32.40 16 5 C -0.42 -9.99 5.66 22.54 0.13 -9.86 16 6 C -0.08 -1.86 9.44 22.23 0.21 -1.66 16 7 C -0.09 -1.46 10.04 22.33 0.22 -1.24 16 8 C -0.09 -1.48 10.03 22.23 0.22 -1.26 16 9 C -0.08 -1.68 9.62 22.54 0.22 -1.47 16 10 C -0.07 -1.64 5.87 -20.10 -0.12 -1.76 16 11 C 0.51 13.27 7.88 70.33 0.55 13.83 16 12 O -0.50 -12.13 13.00 19.94 0.26 -11.87 16 13 O -0.33 -10.47 9.01 -49.80 -0.45 -10.91 16 14 C 0.07 2.18 5.95 71.24 0.42 2.60 16 15 C 0.44 19.46 7.86 87.66 0.69 20.15 16 16 O -0.62 -32.84 16.08 15.73 0.25 -32.59 16 17 N -0.56 -26.70 5.29 -306.97 -1.62 -28.32 16 18 C -0.34 -18.09 9.68 84.04 0.81 -17.27 16 19 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 20 C -0.01 -0.33 5.50 84.93 0.47 0.13 16 21 N -0.91 -46.69 13.05 21.66 0.28 -46.41 16 22 Si 0.99 40.66 29.55 68.60 2.03 42.69 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 26 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.12 2.32 7.78 -2.39 -0.02 2.30 16 31 H 0.13 3.00 7.34 -2.91 -0.02 2.98 16 32 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 33 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.15 3.31 7.61 -2.91 -0.02 3.29 16 35 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.40 17.88 7.90 -92.71 -0.73 17.15 16 38 H 0.28 13.43 8.31 -92.71 -0.77 12.66 16 Total: -1.00 -71.82 349.55 3.04 -68.78 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.37 Total: 27.08 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 5.01 Total: -8.06 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -1.34 Total: -74.73 kcal Atomic # 8 Polarization: -85.34 SS G_CDS: -2.44 Total: -87.78 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Atomic # 16 Polarization: 32.61 SS G_CDS: -0.59 Total: 32.02 kcal Total: -71.82 3.04 -68.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731238952.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.957 kcal (2) G-P(sol) polarization free energy of solvation -71.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds