Wall clock time and date at job start Fri Apr 10 2020 14:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47490 * 2 1 4 4 C 1.36941 * 119.99851 * 275.24560 * 3 2 1 5 5 H 1.08004 * 119.99899 * 146.57678 * 4 3 2 6 6 C 1.38812 * 119.99842 * 326.57677 * 4 3 2 7 7 N 1.31618 * 119.99792 * 336.12793 * 6 4 3 8 8 Si 1.86793 * 119.99968 * 156.13262 * 6 4 3 9 9 H 1.48506 * 109.47072 * 59.99903 * 8 6 4 10 10 H 1.48501 * 109.47223 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47187 * 300.00054 * 8 6 4 12 12 S 1.65598 * 120.00009 * 95.23928 * 3 2 1 13 13 O 1.42102 * 104.27495 * 153.92981 * 12 3 2 14 14 O 1.42102 * 104.27893 * 26.07713 * 12 3 2 15 15 C 1.81401 * 104.45286 * 270.00119 * 12 3 2 16 16 C 1.53002 * 109.47217 * 180.02562 * 15 12 3 17 17 H 1.08999 * 109.38418 * 55.20947 * 16 15 12 18 18 C 1.52581 * 109.38577 * 175.00013 * 16 15 12 19 19 C 1.52586 * 110.64531 * 190.14440 * 18 16 15 20 20 C 1.53041 * 109.98624 * 290.01863 * 19 18 16 21 21 S 1.81661 * 109.00010 * 63.64211 * 20 19 18 22 22 O 1.42101 * 108.66248 * 60.03488 * 21 20 19 23 23 O 1.42101 * 108.66530 * 191.27623 * 21 20 19 24 24 C 1.53040 * 109.38482 * 295.53036 * 16 15 12 25 25 H 1.08991 * 109.47210 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46936 * 300.00357 * 1 2 3 27 27 H 1.08997 * 109.46743 * 59.99621 * 1 2 3 28 28 H 1.09002 * 109.46936 * 239.99643 * 2 1 3 29 29 H 1.08999 * 109.46724 * 119.99842 * 2 1 3 30 30 H 0.96999 * 119.99521 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47274 * 300.00037 * 15 12 3 32 32 H 1.09001 * 109.46890 * 60.00215 * 15 12 3 33 33 H 1.09003 * 109.24444 * 310.44944 * 18 16 15 34 34 H 1.09006 * 109.24415 * 69.88365 * 18 16 15 35 35 H 1.09004 * 109.38407 * 50.16917 * 19 18 16 36 36 H 1.08998 * 109.38953 * 169.85666 * 19 18 16 37 37 H 1.09000 * 109.55060 * 183.50506 * 20 19 18 38 38 H 1.09001 * 109.54664 * 303.69017 * 20 19 18 39 39 H 1.09000 * 109.54384 * 296.04848 * 24 16 15 40 40 H 1.09002 * 109.55157 * 56.33527 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1445 2.0628 -1.1810 5 1 1.9695 3.1282 -1.2109 6 6 2.4971 1.3845 -2.3396 7 7 3.1521 0.2455 -2.2619 8 14 2.0421 2.0882 -4.0090 9 1 2.6695 3.4245 -4.1706 10 1 2.5296 1.1805 -5.0784 11 1 0.5660 2.2195 -4.1053 12 16 2.4180 2.1181 1.4281 13 8 3.3746 3.1020 1.0591 14 8 2.7670 1.0444 2.2910 15 6 0.8780 2.9028 1.9790 16 6 1.1202 3.6260 3.3053 17 1 1.9458 4.3281 3.1891 18 6 -0.1402 4.3879 3.7042 19 6 0.1423 5.3159 4.8821 20 6 0.3810 4.4935 6.1504 21 16 1.8712 3.4790 5.9258 22 8 2.9760 4.3404 5.6878 23 8 1.9418 2.5339 6.9846 24 6 1.4759 2.6015 4.3851 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.3982 -0.2286 -3.0715 31 1 0.5477 3.6213 1.2288 32 1 0.1105 2.1408 2.1151 33 1 -0.4863 4.9789 2.8562 34 1 -0.9160 3.6762 3.9864 35 1 1.0277 5.9143 4.6670 36 1 -0.7109 5.9769 5.0347 37 1 0.5203 5.1635 6.9988 38 1 -0.4776 3.8474 6.3332 39 1 0.6278 1.9372 4.5509 40 1 2.3400 2.0192 4.0649 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347055525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:09 Heat of formation + Delta-G solvation = -140.488084 kcal Electronic energy + Delta-G solvation = -25267.625927 eV Core-core repulsion = 21530.232716 eV Total energy + Delta-G solvation = -3737.393210 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -38.16060 -36.95155 -36.14523 -36.11570 -35.89355 -34.87037 -33.19541 -31.70105 -29.27329 -28.24575 -27.46186 -24.62423 -22.98477 -21.71384 -20.76418 -19.00452 -18.48360 -17.30241 -16.94782 -16.66463 -16.32433 -15.88104 -15.75839 -15.47871 -14.83466 -14.51282 -14.32402 -13.84598 -13.57067 -13.31379 -13.24596 -12.92640 -12.65652 -12.39047 -12.23186 -12.11485 -12.01036 -11.94496 -11.68915 -11.60972 -11.28300 -11.14106 -11.02828 -11.01595 -10.95205 -10.84852 -10.78977 -10.46269 -10.40136 -10.19684 -9.93234 -9.74347 -9.03784 -7.72910 -6.26199 -3.95114 -0.13331 1.18737 2.51597 3.20410 3.26038 3.26755 3.51067 3.70383 3.80014 4.17115 4.23133 4.35483 4.41966 4.46081 4.56284 4.71256 4.88085 4.97599 5.02246 5.07542 5.20390 5.28027 5.36497 5.50596 5.61728 5.70943 5.80314 5.86241 5.92151 6.05972 6.18172 6.30505 6.53153 6.86604 7.24939 7.40118 7.78387 8.40331 9.00375 9.37086 10.75712 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.024577 B = 0.004002 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.024369 B = 6995.086429 C = 7189.800944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.107 3.893 3 N -0.844 5.844 4 C -0.290 4.290 5 H 0.091 0.909 6 C 0.039 3.961 7 N -0.857 5.857 8 Si 0.914 3.086 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.275 1.275 12 S 2.550 3.450 13 O -0.961 6.961 14 O -0.991 6.991 15 C -0.626 4.626 16 C -0.063 4.063 17 H 0.102 0.898 18 C -0.128 4.128 19 C -0.113 4.113 20 C -0.606 4.606 21 S 2.418 3.582 22 O -0.933 6.933 23 O -0.941 6.941 24 C -0.636 4.636 25 H 0.048 0.952 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.116 0.884 29 H 0.061 0.939 30 H 0.267 0.733 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.145 0.855 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.359 6.295 10.743 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.021 4.021 3 N -0.676 5.676 4 C -0.425 4.425 5 H 0.108 0.892 6 C -0.169 4.169 7 N -0.496 5.496 8 Si 0.741 3.259 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.200 1.200 12 S 2.650 3.350 13 O -0.951 6.951 14 O -0.980 6.980 15 C -0.752 4.752 16 C -0.083 4.083 17 H 0.120 0.880 18 C -0.166 4.166 19 C -0.151 4.151 20 C -0.735 4.735 21 S 2.600 3.400 22 O -0.930 6.930 23 O -0.938 6.938 24 C -0.764 4.764 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.133 0.867 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.164 0.836 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.659 6.129 11.729 16.384 hybrid contribution -1.678 0.324 -1.351 2.179 sum -11.337 6.453 10.378 16.670 Atomic orbital electron populations 1.22234 0.98971 1.00156 1.00926 1.21372 0.91281 0.84403 1.04999 1.52591 1.77009 1.20577 1.17394 1.19015 1.45340 0.93918 0.84229 0.89172 1.25303 0.95032 0.96882 0.99648 1.69974 1.33623 1.16767 1.29241 0.86212 0.78949 0.79061 0.81718 1.19734 1.20974 1.20026 1.07565 0.76514 0.75347 0.75615 1.93490 1.56145 1.63810 1.81654 1.93398 1.82042 1.53103 1.69486 1.30823 1.26729 1.12993 1.04672 1.20570 1.00466 0.95401 0.91862 0.88021 1.21756 0.97101 0.98846 0.98931 1.21325 1.04891 0.98102 0.90773 1.30269 1.21692 1.14496 1.07040 1.08046 0.77761 0.76961 0.77227 1.93605 1.47614 1.66169 1.85585 1.93591 1.86483 1.61651 1.52108 1.30816 1.14565 1.12109 1.18936 0.93304 0.94780 0.92135 0.86700 0.92099 0.92239 0.84612 0.85302 0.89046 0.90264 0.89406 0.89274 0.84847 0.84817 0.83645 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 10.21 37.16 0.38 -2.46 16 2 C 0.11 2.32 5.98 -4.04 -0.02 2.30 16 3 N -0.84 -19.74 2.78 -59.91 -0.17 -19.90 16 4 C -0.29 -7.29 8.78 -15.06 -0.13 -7.42 16 5 H 0.09 2.17 7.94 -52.48 -0.42 1.75 16 6 C 0.04 0.98 4.98 -17.43 -0.09 0.89 16 7 N -0.86 -22.83 11.28 55.49 0.63 -22.20 16 8 Si 0.91 19.49 29.62 -169.99 -5.03 14.45 16 9 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 12 S 2.55 54.66 5.03 -107.50 -0.54 54.12 16 13 O -0.96 -24.25 17.22 -57.54 -0.99 -25.24 16 14 O -0.99 -22.52 14.18 -57.54 -0.82 -23.33 16 15 C -0.63 -9.07 5.60 37.16 0.21 -8.86 16 16 C -0.06 -0.78 2.02 -90.81 -0.18 -0.96 16 17 H 0.10 1.30 8.01 -51.93 -0.42 0.89 16 18 C -0.13 -1.06 4.93 -27.16 -0.13 -1.20 16 19 C -0.11 -0.81 5.73 -26.92 -0.15 -0.96 16 20 C -0.61 -4.30 6.35 37.18 0.24 -4.07 16 21 S 2.42 28.47 5.30 -107.50 -0.57 27.90 16 22 O -0.93 -14.32 17.93 -57.82 -1.04 -15.36 16 23 O -0.94 -13.90 18.11 -57.82 -1.05 -14.94 16 24 C -0.64 -7.94 5.40 37.18 0.20 -7.74 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.03 0.50 6.98 -51.93 -0.36 0.14 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.12 2.78 5.31 -51.93 -0.28 2.51 16 29 H 0.06 1.30 6.81 -51.93 -0.35 0.95 16 30 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.14 1.76 8.10 -51.92 -0.42 1.34 16 32 H 0.13 1.58 6.98 -51.92 -0.36 1.22 16 33 H 0.09 0.68 8.06 -51.93 -0.42 0.26 16 34 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.09 0.67 8.01 -51.93 -0.42 0.25 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.15 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.16 2.38 5.36 -51.93 -0.28 2.10 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -35.90 339.55 -9.96 -45.86 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.81 Total: 4.01 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 0.31 Total: -30.48 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.46 Total: -42.11 kcal Atomic # 8 Polarization: -74.98 SS G_CDS: -3.89 Total: -78.87 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.45 kcal Atomic # 16 Polarization: 83.13 SS G_CDS: -1.11 Total: 82.02 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.90 -9.96 -45.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347055525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.625 kcal (2) G-P(sol) polarization free energy of solvation -35.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds