Wall clock time and date at job start Fri Apr 10 2020 14:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47490 * 2 1 4 4 C 1.36941 * 119.99851 * 275.24560 * 3 2 1 5 5 H 1.08004 * 119.99899 * 146.57678 * 4 3 2 6 6 C 1.38812 * 119.99842 * 326.57677 * 4 3 2 7 7 N 1.31618 * 119.99792 * 336.12793 * 6 4 3 8 8 Si 1.86793 * 119.99968 * 156.13262 * 6 4 3 9 9 H 1.48506 * 109.47072 * 59.99903 * 8 6 4 10 10 H 1.48501 * 109.47223 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47187 * 300.00054 * 8 6 4 12 12 S 1.65598 * 120.00009 * 95.23928 * 3 2 1 13 13 O 1.42102 * 104.27495 * 153.92981 * 12 3 2 14 14 O 1.42102 * 104.27893 * 26.07713 * 12 3 2 15 15 C 1.81401 * 104.45286 * 270.00119 * 12 3 2 16 16 C 1.53002 * 109.47217 * 180.02562 * 15 12 3 17 17 H 1.08999 * 109.38418 * 55.20947 * 16 15 12 18 18 C 1.52581 * 109.38577 * 175.00013 * 16 15 12 19 19 C 1.52586 * 110.64531 * 190.14440 * 18 16 15 20 20 C 1.53041 * 109.98624 * 290.01863 * 19 18 16 21 21 S 1.81661 * 109.00010 * 63.64211 * 20 19 18 22 22 O 1.42101 * 108.66248 * 60.03488 * 21 20 19 23 23 O 1.42101 * 108.66530 * 191.27623 * 21 20 19 24 24 C 1.53040 * 109.38482 * 295.53036 * 16 15 12 25 25 H 1.08991 * 109.47210 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46936 * 300.00357 * 1 2 3 27 27 H 1.08997 * 109.46743 * 59.99621 * 1 2 3 28 28 H 1.09002 * 109.46936 * 239.99643 * 2 1 3 29 29 H 1.08999 * 109.46724 * 119.99842 * 2 1 3 30 30 H 0.96999 * 119.99521 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47274 * 300.00037 * 15 12 3 32 32 H 1.09001 * 109.46890 * 60.00215 * 15 12 3 33 33 H 1.09003 * 109.24444 * 310.44944 * 18 16 15 34 34 H 1.09006 * 109.24415 * 69.88365 * 18 16 15 35 35 H 1.09004 * 109.38407 * 50.16917 * 19 18 16 36 36 H 1.08998 * 109.38953 * 169.85666 * 19 18 16 37 37 H 1.09000 * 109.55060 * 183.50506 * 20 19 18 38 38 H 1.09001 * 109.54664 * 303.69017 * 20 19 18 39 39 H 1.09000 * 109.54384 * 296.04848 * 24 16 15 40 40 H 1.09002 * 109.55157 * 56.33527 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1445 2.0628 -1.1810 5 1 1.9695 3.1282 -1.2109 6 6 2.4971 1.3845 -2.3396 7 7 3.1521 0.2455 -2.2619 8 14 2.0421 2.0882 -4.0090 9 1 2.6695 3.4245 -4.1706 10 1 2.5296 1.1805 -5.0784 11 1 0.5660 2.2195 -4.1053 12 16 2.4180 2.1181 1.4281 13 8 3.3746 3.1020 1.0591 14 8 2.7670 1.0444 2.2910 15 6 0.8780 2.9028 1.9790 16 6 1.1202 3.6260 3.3053 17 1 1.9458 4.3281 3.1891 18 6 -0.1402 4.3879 3.7042 19 6 0.1423 5.3159 4.8821 20 6 0.3810 4.4935 6.1504 21 16 1.8712 3.4790 5.9258 22 8 2.9760 4.3404 5.6878 23 8 1.9418 2.5339 6.9846 24 6 1.4759 2.6015 4.3851 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.3982 -0.2286 -3.0715 31 1 0.5477 3.6213 1.2288 32 1 0.1105 2.1408 2.1151 33 1 -0.4863 4.9789 2.8562 34 1 -0.9160 3.6762 3.9864 35 1 1.0277 5.9143 4.6670 36 1 -0.7109 5.9769 5.0347 37 1 0.5203 5.1635 6.9988 38 1 -0.4776 3.8474 6.3332 39 1 0.6278 1.9372 4.5509 40 1 2.3400 2.0192 4.0649 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347055525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:07 Heat of formation + Delta-G solvation = -170.090562 kcal Electronic energy + Delta-G solvation = -25268.909586 eV Core-core repulsion = 21530.232716 eV Total energy + Delta-G solvation = -3738.676870 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -38.99930 -37.97900 -37.87883 -37.64746 -37.13495 -36.65065 -33.98060 -33.53607 -30.89888 -29.23568 -28.27126 -26.45476 -23.83947 -23.20460 -21.64335 -20.23953 -19.89099 -18.98717 -18.24041 -17.74353 -17.56998 -17.35345 -16.78646 -16.64566 -16.33777 -16.01011 -15.27380 -15.17039 -14.67903 -14.49453 -14.26644 -14.07838 -14.02483 -13.64473 -13.58826 -13.29163 -13.15507 -13.06562 -13.00797 -12.78854 -12.68273 -12.60761 -12.52306 -12.49128 -12.29167 -12.12167 -11.93458 -11.82025 -11.64513 -11.55395 -11.44985 -11.03651 -10.72266 -9.54898 -8.13818 -5.88642 -0.99607 -0.41010 1.50989 1.52111 1.60257 1.68498 2.15386 2.56346 2.66032 2.86572 2.97325 3.22079 3.34806 3.45068 3.58151 3.60184 3.77017 3.90984 4.09896 4.18533 4.41969 4.47754 4.49062 4.60151 4.68967 4.75842 4.77715 4.79541 4.86882 5.04550 5.09271 5.21458 5.33476 5.34890 5.52736 5.66756 6.00413 6.53125 7.14176 7.49422 8.87678 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.024577 B = 0.004002 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.024369 B = 6995.086429 C = 7189.800944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.098 3.902 3 N -0.860 5.860 4 C -0.308 4.308 5 H 0.095 0.905 6 C -0.011 4.011 7 N -0.899 5.899 8 Si 0.976 3.024 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.255 1.255 12 S 2.531 3.469 13 O -1.017 7.017 14 O -1.019 7.019 15 C -0.584 4.584 16 C -0.073 4.073 17 H 0.085 0.915 18 C -0.126 4.126 19 C -0.118 4.118 20 C -0.566 4.566 21 S 2.406 3.594 22 O -0.985 6.985 23 O -0.982 6.982 24 C -0.649 4.649 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.266 0.734 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.159 0.841 38 H 0.174 0.826 39 H 0.182 0.818 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.290 8.282 11.839 21.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.029 4.029 3 N -0.691 5.691 4 C -0.442 4.442 5 H 0.112 0.888 6 C -0.214 4.214 7 N -0.540 5.540 8 Si 0.800 3.200 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.180 1.180 12 S 2.638 3.362 13 O -1.008 7.008 14 O -1.009 7.009 15 C -0.718 4.718 16 C -0.094 4.094 17 H 0.103 0.897 18 C -0.164 4.164 19 C -0.157 4.157 20 C -0.700 4.700 21 S 2.594 3.406 22 O -0.983 6.983 23 O -0.980 6.980 24 C -0.777 4.777 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.180 0.820 32 H 0.184 0.816 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.095 0.905 36 H 0.147 0.853 37 H 0.177 0.823 38 H 0.192 0.808 39 H 0.200 0.800 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.483 8.038 12.765 20.912 hybrid contribution -0.203 -0.223 -1.510 1.539 sum -14.686 7.815 11.255 20.085 Atomic orbital electron populations 1.22112 0.95012 1.02007 1.02082 1.21384 0.94583 0.83764 1.03120 1.52706 1.77635 1.21139 1.17652 1.19302 1.45349 0.94245 0.85303 0.88783 1.26166 0.94911 0.97236 1.03106 1.70118 1.35455 1.18507 1.29876 0.85259 0.79550 0.77865 0.77297 1.19841 1.21392 1.17970 1.07496 0.78875 0.74858 0.74969 1.93424 1.60432 1.64406 1.82495 1.93369 1.83978 1.54420 1.69140 1.30409 1.20840 1.13976 1.06540 1.20813 1.02892 0.95331 0.90339 0.89679 1.21851 0.94875 0.99467 1.00171 1.21480 1.06125 0.98206 0.89873 1.30016 1.17841 1.13832 1.08347 1.08131 0.79541 0.76777 0.76182 1.93536 1.51952 1.66836 1.85925 1.93532 1.87943 1.63513 1.52976 1.30897 1.14537 1.12807 1.19463 0.91162 0.91776 0.92668 0.89652 0.93025 0.92506 0.82022 0.81625 0.87302 0.86845 0.90474 0.85314 0.82332 0.80803 0.79988 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 10.21 71.98 0.73 -4.26 16 2 C 0.10 4.37 5.98 86.38 0.52 4.88 16 3 N -0.86 -41.00 2.78 -343.44 -0.95 -41.96 16 4 C -0.31 -15.79 8.78 84.03 0.74 -15.05 16 5 H 0.09 4.59 7.94 -2.91 -0.02 4.56 16 6 C -0.01 -0.58 4.98 84.86 0.42 -0.15 16 7 N -0.90 -50.15 11.28 21.65 0.24 -49.90 16 8 Si 0.98 40.43 29.62 68.60 2.03 42.46 16 9 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 10 H -0.29 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 12 S 2.53 110.96 5.03 -56.49 -0.28 110.68 16 13 O -1.02 -54.05 17.22 -127.65 -2.20 -56.25 16 14 O -1.02 -48.50 14.18 -127.65 -1.81 -50.31 16 15 C -0.58 -15.07 5.60 71.98 0.40 -14.67 16 16 C -0.07 -1.60 2.02 -10.92 -0.02 -1.62 16 17 H 0.08 2.14 8.01 -2.39 -0.02 2.12 16 18 C -0.13 -1.30 4.93 30.32 0.15 -1.15 16 19 C -0.12 -0.99 5.73 30.47 0.17 -0.82 16 20 C -0.57 -4.93 6.35 72.00 0.46 -4.47 16 21 S 2.41 54.22 5.30 -56.49 -0.30 53.92 16 22 O -0.99 -31.37 17.93 -127.38 -2.28 -33.66 16 23 O -0.98 -28.86 18.11 -127.38 -2.31 -31.16 16 24 C -0.65 -15.22 5.40 72.00 0.39 -14.83 16 25 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.06 1.66 6.98 -2.39 -0.02 1.64 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.09 4.33 5.31 -2.39 -0.01 4.32 16 29 H 0.05 2.30 6.81 -2.39 -0.02 2.29 16 30 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 31 H 0.16 3.50 8.10 -2.39 -0.02 3.48 16 32 H 0.17 3.16 6.98 -2.39 -0.02 3.14 16 33 H 0.11 0.85 8.06 -2.39 -0.02 0.83 16 34 H 0.11 0.49 8.09 -2.38 -0.02 0.47 16 35 H 0.08 0.88 8.01 -2.38 -0.02 0.86 16 36 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.16 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.17 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.18 2.64 8.14 -2.39 -0.02 2.63 16 40 H 0.12 3.75 5.36 -2.39 -0.01 3.73 16 Total: -1.00 -87.71 339.55 -2.86 -90.57 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 1.04 Total: 17.75 kcal Atomic # 6 Polarization: -56.11 SS G_CDS: 3.96 Total: -52.14 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -0.71 Total: -91.86 kcal Atomic # 8 Polarization: -162.78 SS G_CDS: -8.60 Total: -171.38 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 16 Polarization: 165.18 SS G_CDS: -0.58 Total: 164.60 kcal Total: -87.71 -2.86 -90.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347055525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.516 kcal (2) G-P(sol) polarization free energy of solvation -87.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds