Wall clock time and date at job start Fri Apr 10 2020 14:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34233 * 116.99603 * 2 1 4 4 O 1.20821 * 120.00385 * 0.02562 * 3 2 1 5 5 C 1.50710 * 119.99444 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.46716 * 180.02562 * 5 3 2 7 7 C 1.36869 * 120.00174 * 280.44047 * 6 5 3 8 8 H 1.08002 * 119.99481 * 316.00597 * 7 6 5 9 9 C 1.39045 * 120.00367 * 136.00734 * 7 6 5 10 10 N 1.31362 * 120.00063 * 338.90124 * 9 7 6 11 11 Si 1.86799 * 119.99918 * 158.90272 * 9 7 6 12 12 H 1.48496 * 109.47418 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47185 * 120.00004 * 11 9 7 14 14 H 1.48505 * 109.47028 * 239.99751 * 11 9 7 15 15 C 1.34780 * 119.99807 * 100.43660 * 6 5 3 16 16 O 1.21593 * 119.99495 * 186.72330 * 15 6 5 17 17 C 1.47725 * 120.00158 * 6.72196 * 15 6 5 18 18 C 1.39646 * 120.15078 * 322.27842 * 17 15 6 19 19 C 1.37934 * 119.84574 * 179.69729 * 18 17 15 20 20 C 1.38374 * 120.14977 * 0.59900 * 19 18 17 21 21 S 1.76204 * 119.84665 * 179.69822 * 20 19 18 22 22 C 1.81395 * 102.99847 * 269.97868 * 21 20 19 23 23 O 1.42104 * 102.99902 * 156.12400 * 21 20 19 24 24 C 1.38378 * 120.30823 * 359.67724 * 20 19 18 25 25 C 1.37932 * 120.14734 * 0.02562 * 24 20 19 26 26 H 1.08996 * 109.47044 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47168 * 299.99568 * 1 2 3 28 28 H 1.08996 * 109.47105 * 59.99653 * 1 2 3 29 29 H 1.08992 * 109.46965 * 60.00298 * 5 3 2 30 30 H 1.09002 * 109.46861 * 299.99902 * 5 3 2 31 31 H 0.96997 * 120.00105 * 185.04598 * 10 9 7 32 32 H 1.08006 * 120.07459 * 359.97438 * 18 17 15 33 33 H 1.07999 * 119.92722 * 180.29606 * 19 18 17 34 34 H 1.08991 * 109.47408 * 59.99964 * 22 21 20 35 35 H 1.09008 * 109.47236 * 180.02562 * 22 21 20 36 36 H 1.08998 * 109.47339 * 299.99586 * 22 21 20 37 37 H 1.07993 * 119.92453 * 180.02562 * 24 20 19 38 38 H 1.08004 * 120.07709 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 3.9693 3.3978 -1.1650 8 1 4.3532 2.9586 -2.0740 9 6 3.4624 4.6925 -1.1786 10 7 2.6382 5.0851 -0.2340 11 14 3.9533 5.8735 -2.5401 12 1 4.8847 5.1920 -3.4746 13 1 2.7410 6.3080 -3.2795 14 1 4.6240 7.0592 -1.9488 15 6 4.3760 3.2653 1.1483 16 8 4.6033 4.4595 1.1748 17 6 4.5320 2.4563 2.3744 18 6 3.6360 1.4214 2.6506 19 6 3.7912 0.6659 3.7942 20 6 4.8245 0.9395 4.6730 21 16 5.0106 -0.0256 6.1354 22 6 4.0110 0.8775 7.3502 23 8 6.3884 0.1288 6.4471 24 6 5.7126 1.9672 4.4084 25 6 5.5726 2.7267 3.2655 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 3.9557 0.7810 -0.8908 30 1 3.9564 0.7806 0.8892 31 1 2.2275 5.9624 -0.2827 32 1 2.8260 1.2101 1.9681 33 1 3.1019 -0.1379 4.0066 34 1 2.9773 0.9239 7.0076 35 1 4.0532 0.3628 8.3102 36 1 4.4021 1.8886 7.4630 37 1 6.5169 2.1751 5.0983 38 1 6.2662 3.5288 3.0604 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120730608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:57 Heat of formation + Delta-G solvation = -83.306956 kcal Electronic energy + Delta-G solvation = -25828.866912 eV Core-core repulsion = 21958.509310 eV Total energy + Delta-G solvation = -3870.357602 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.20610 -39.11973 -37.49276 -35.78933 -35.73917 -34.24133 -32.34222 -30.77213 -30.62934 -28.87368 -28.52232 -26.37991 -25.19590 -22.89784 -22.48577 -20.80882 -19.63367 -18.07539 -17.29832 -17.03839 -16.62797 -16.40134 -15.83948 -15.44665 -15.14430 -14.85413 -14.70887 -14.27203 -14.11700 -13.75102 -13.48607 -13.42068 -13.14061 -12.74847 -12.73278 -12.56110 -12.26008 -12.08206 -11.73679 -11.66415 -11.49515 -11.19599 -10.91611 -10.78883 -10.68842 -10.27686 -10.24941 -10.21166 -9.71946 -8.93760 -8.89927 -8.71952 -8.48435 -8.21735 -7.34141 -6.14592 -3.93996 0.89874 1.58029 1.87456 2.64937 2.92723 3.11166 3.27805 3.36974 3.39015 3.65217 3.90882 4.19081 4.45088 4.70711 5.03551 5.06378 5.11142 5.16846 5.19390 5.36029 5.42876 5.45924 5.56347 5.58177 5.69154 5.70717 5.84281 5.84982 5.96608 5.98016 6.20524 6.38850 6.47006 6.74219 6.94273 7.09851 7.52629 8.10735 8.51303 8.84660 8.95959 9.46031 10.02670 10.90323 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014491 B = 0.004337 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.802079 B = 6454.114340 C = 7846.337156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.377 6.377 3 C 0.418 3.582 4 O -0.446 6.446 5 C 0.092 3.908 6 N -0.419 5.419 7 C -0.361 4.361 8 H 0.086 0.914 9 C 0.080 3.920 10 N -0.791 5.791 11 Si 0.911 3.089 12 H -0.269 1.269 13 H -0.285 1.285 14 H -0.280 1.280 15 C 0.502 3.498 16 O -0.512 6.512 17 C -0.054 4.054 18 C -0.134 4.134 19 C -0.048 4.048 20 C -0.467 4.467 21 S 1.331 4.669 22 C -0.499 4.499 23 O -0.862 6.862 24 C -0.056 4.056 25 C -0.097 4.097 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.264 0.736 32 H 0.130 0.870 33 H 0.136 0.864 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.126 0.874 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.086 -15.555 8.532 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.295 6.295 3 C 0.255 3.745 4 O -0.327 6.327 5 C -0.034 4.034 6 N -0.140 5.140 7 C -0.487 4.487 8 H 0.104 0.896 9 C -0.135 4.135 10 N -0.421 5.421 11 Si 0.738 3.262 12 H -0.193 1.193 13 H -0.211 1.211 14 H -0.205 1.205 15 C 0.291 3.709 16 O -0.389 6.389 17 C -0.058 4.058 18 C -0.153 4.153 19 C -0.067 4.067 20 C -0.564 4.564 21 S 1.528 4.472 22 C -0.655 4.655 23 O -0.858 6.858 24 C -0.075 4.075 25 C -0.117 4.117 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.131 0.869 31 H 0.074 0.926 32 H 0.148 0.852 33 H 0.154 0.846 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.143 0.857 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.750 -15.202 8.795 17.777 hybrid contribution 0.206 2.961 -0.553 3.020 sum -2.544 -12.241 8.243 14.975 Atomic orbital electron populations 1.23077 0.78000 1.02501 1.02189 1.86545 1.22286 1.35152 1.85521 1.25064 0.93325 0.81480 0.74585 1.90838 1.65892 1.35362 1.40570 1.21841 0.86513 0.89835 1.05206 1.42955 1.55400 1.07338 1.08267 1.19034 1.44755 0.97134 0.87807 0.89644 1.25303 0.93295 0.98471 0.96476 1.69926 1.21505 1.19050 1.31622 0.86178 0.78388 0.81007 0.80660 1.19338 1.21118 1.20528 1.17866 0.82778 0.87613 0.82682 1.90663 1.51254 1.13805 1.83147 1.20841 0.94506 0.94461 0.95979 1.21765 0.99646 0.95895 0.98030 1.20698 0.95230 0.98139 0.92650 1.27471 1.03251 1.10219 1.15500 1.69262 0.89697 1.04957 0.83252 1.27776 1.12570 1.11397 1.13806 1.93086 1.28313 1.82344 1.82052 1.20972 0.96964 0.92993 0.96586 1.21261 0.97787 0.99234 0.93409 0.88951 0.92518 0.92446 0.88184 0.86863 0.92591 0.85203 0.84622 0.87091 0.87934 0.90029 0.85652 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.53 16 2 O -0.38 -5.91 10.57 -39.27 -0.41 -6.33 16 3 C 0.42 8.22 5.96 36.01 0.21 8.44 16 4 O -0.45 -10.89 15.89 -18.75 -0.30 -11.19 16 5 C 0.09 1.76 5.47 -5.19 -0.03 1.73 16 6 N -0.42 -10.33 2.11 -117.21 -0.25 -10.58 16 7 C -0.36 -9.77 8.84 -15.00 -0.13 -9.90 16 8 H 0.09 2.19 7.92 -52.49 -0.42 1.77 16 9 C 0.08 2.24 4.29 -17.45 -0.07 2.17 16 10 N -0.79 -23.76 11.70 55.50 0.65 -23.11 16 11 Si 0.91 21.83 29.61 -169.99 -5.03 16.79 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 C 0.50 12.87 6.82 -12.38 -0.08 12.79 16 16 O -0.51 -15.25 14.36 5.28 0.08 -15.18 16 17 C -0.05 -1.11 5.39 -104.97 -0.57 -1.67 16 18 C -0.13 -2.26 7.36 -39.17 -0.29 -2.55 16 19 C -0.05 -0.60 9.73 -39.64 -0.39 -0.99 16 20 C -0.47 -6.19 5.62 -39.48 -0.22 -6.42 16 21 S 1.33 12.42 14.18 -107.50 -1.52 10.89 16 22 C -0.50 -4.23 10.70 101.05 1.08 -3.15 16 23 O -0.86 -13.58 16.88 -35.23 -0.59 -14.17 16 24 C -0.06 -0.92 9.42 -39.64 -0.37 -1.29 16 25 C -0.10 -1.83 9.62 -39.17 -0.38 -2.21 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.10 1.68 8.12 -51.93 -0.42 1.26 16 30 H 0.11 1.86 4.33 -51.93 -0.23 1.63 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.13 2.24 4.00 -52.48 -0.21 2.03 16 33 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 37 H 0.13 2.03 7.44 -52.49 -0.39 1.64 16 38 H 0.13 2.50 8.04 -52.48 -0.42 2.08 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -40.81 341.46 -6.59 -47.40 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -4.18 Total: 1.84 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -0.17 Total: -1.52 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.40 Total: -33.68 kcal Atomic # 8 Polarization: -45.64 SS G_CDS: -1.23 Total: -46.87 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.79 kcal Atomic # 16 Polarization: 12.42 SS G_CDS: -1.52 Total: 10.89 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -40.81 -6.59 -47.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120730608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.907 kcal (2) G-P(sol) polarization free energy of solvation -40.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds