Wall clock time and date at job start Fri Apr 10 2020 14:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34233 * 116.99603 * 2 1 4 4 O 1.20821 * 120.00385 * 0.02562 * 3 2 1 5 5 C 1.50710 * 119.99444 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.46716 * 180.02562 * 5 3 2 7 7 C 1.36869 * 120.00174 * 280.44047 * 6 5 3 8 8 H 1.08002 * 119.99481 * 316.00597 * 7 6 5 9 9 C 1.39045 * 120.00367 * 136.00734 * 7 6 5 10 10 N 1.31362 * 120.00063 * 338.90124 * 9 7 6 11 11 Si 1.86799 * 119.99918 * 158.90272 * 9 7 6 12 12 H 1.48496 * 109.47418 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47185 * 120.00004 * 11 9 7 14 14 H 1.48505 * 109.47028 * 239.99751 * 11 9 7 15 15 C 1.34780 * 119.99807 * 100.43660 * 6 5 3 16 16 O 1.21593 * 119.99495 * 186.72330 * 15 6 5 17 17 C 1.47725 * 120.00158 * 6.72196 * 15 6 5 18 18 C 1.39646 * 120.15078 * 322.27842 * 17 15 6 19 19 C 1.37934 * 119.84574 * 179.69729 * 18 17 15 20 20 C 1.38374 * 120.14977 * 0.59900 * 19 18 17 21 21 S 1.76204 * 119.84665 * 179.69822 * 20 19 18 22 22 C 1.81395 * 102.99847 * 269.97868 * 21 20 19 23 23 O 1.42104 * 102.99902 * 156.12400 * 21 20 19 24 24 C 1.38378 * 120.30823 * 359.67724 * 20 19 18 25 25 C 1.37932 * 120.14734 * 0.02562 * 24 20 19 26 26 H 1.08996 * 109.47044 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47168 * 299.99568 * 1 2 3 28 28 H 1.08996 * 109.47105 * 59.99653 * 1 2 3 29 29 H 1.08992 * 109.46965 * 60.00298 * 5 3 2 30 30 H 1.09002 * 109.46861 * 299.99902 * 5 3 2 31 31 H 0.96997 * 120.00105 * 185.04598 * 10 9 7 32 32 H 1.08006 * 120.07459 * 359.97438 * 18 17 15 33 33 H 1.07999 * 119.92722 * 180.29606 * 19 18 17 34 34 H 1.08991 * 109.47408 * 59.99964 * 22 21 20 35 35 H 1.09008 * 109.47236 * 180.02562 * 22 21 20 36 36 H 1.08998 * 109.47339 * 299.99586 * 22 21 20 37 37 H 1.07993 * 119.92453 * 180.02562 * 24 20 19 38 38 H 1.08004 * 120.07709 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 3.9693 3.3978 -1.1650 8 1 4.3532 2.9586 -2.0740 9 6 3.4624 4.6925 -1.1786 10 7 2.6382 5.0851 -0.2340 11 14 3.9533 5.8735 -2.5401 12 1 4.8847 5.1920 -3.4746 13 1 2.7410 6.3080 -3.2795 14 1 4.6240 7.0592 -1.9488 15 6 4.3760 3.2653 1.1483 16 8 4.6033 4.4595 1.1748 17 6 4.5320 2.4563 2.3744 18 6 3.6360 1.4214 2.6506 19 6 3.7912 0.6659 3.7942 20 6 4.8245 0.9395 4.6730 21 16 5.0106 -0.0256 6.1354 22 6 4.0110 0.8775 7.3502 23 8 6.3884 0.1288 6.4471 24 6 5.7126 1.9672 4.4084 25 6 5.5726 2.7267 3.2655 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 3.9557 0.7810 -0.8908 30 1 3.9564 0.7806 0.8892 31 1 2.2275 5.9624 -0.2827 32 1 2.8260 1.2101 1.9681 33 1 3.1019 -0.1379 4.0066 34 1 2.9773 0.9239 7.0076 35 1 4.0532 0.3628 8.3102 36 1 4.4021 1.8886 7.4630 37 1 6.5169 2.1751 5.0983 38 1 6.2662 3.5288 3.0604 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120730608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:56 Heat of formation + Delta-G solvation = -114.313549 kcal Electronic energy + Delta-G solvation = -25830.211458 eV Core-core repulsion = 21958.509310 eV Total energy + Delta-G solvation = -3871.702149 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.77033 -40.61180 -39.08905 -37.32650 -36.84309 -36.12213 -34.22980 -32.13800 -32.09068 -30.00738 -29.57488 -27.75431 -26.97186 -24.44907 -23.80592 -22.32864 -21.30315 -19.22717 -18.97676 -18.55134 -18.18631 -17.65666 -17.20253 -16.90326 -16.66581 -16.46446 -15.84570 -15.73673 -15.61942 -15.10840 -14.87977 -14.63186 -14.43831 -14.12800 -14.00811 -13.79349 -13.73647 -13.31703 -13.26216 -12.92125 -12.87718 -12.77065 -12.74244 -12.60513 -12.16264 -12.05760 -11.59671 -11.39019 -11.34676 -10.89815 -10.42724 -10.13790 -9.98895 -9.35855 -9.30498 -8.21505 -6.03948 -0.36551 0.29131 0.95969 1.33357 1.39535 1.40806 1.48853 1.64330 1.81825 2.26664 2.32197 2.75312 2.91640 3.01559 3.24518 3.74960 3.84042 3.94409 4.14339 4.22346 4.30347 4.37691 4.42714 4.44441 4.48339 4.50407 4.58418 4.62265 4.81296 4.94986 5.10615 5.14835 5.23873 5.35663 5.44435 5.52642 5.82412 6.09131 6.86474 6.97846 7.08613 7.48103 8.10674 8.84300 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014491 B = 0.004337 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.802079 B = 6454.114340 C = 7846.337156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.430 3.570 4 O -0.501 6.501 5 C 0.088 3.912 6 N -0.433 5.433 7 C -0.378 4.378 8 H 0.094 0.906 9 C 0.028 3.972 10 N -0.837 5.837 11 Si 0.968 3.032 12 H -0.249 1.249 13 H -0.276 1.276 14 H -0.296 1.296 15 C 0.492 3.508 16 O -0.574 6.574 17 C -0.087 4.087 18 C -0.137 4.137 19 C -0.021 4.021 20 C -0.460 4.460 21 S 1.423 4.577 22 C -0.502 4.502 23 O -0.921 6.921 24 C -0.066 4.066 25 C -0.113 4.113 26 H 0.143 0.857 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.125 0.875 30 H 0.145 0.855 31 H 0.255 0.745 32 H 0.129 0.871 33 H 0.207 0.793 34 H 0.140 0.860 35 H 0.127 0.873 36 H 0.057 0.943 37 H 0.123 0.877 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.364 -19.896 10.188 22.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.270 3.730 4 O -0.386 6.386 5 C -0.037 4.037 6 N -0.153 5.153 7 C -0.505 4.505 8 H 0.111 0.889 9 C -0.182 4.182 10 N -0.469 5.469 11 Si 0.793 3.207 12 H -0.173 1.173 13 H -0.202 1.202 14 H -0.223 1.223 15 C 0.282 3.718 16 O -0.455 6.455 17 C -0.090 4.090 18 C -0.156 4.156 19 C -0.039 4.039 20 C -0.554 4.554 21 S 1.619 4.381 22 C -0.660 4.660 23 O -0.917 6.917 24 C -0.085 4.085 25 C -0.134 4.134 26 H 0.161 0.839 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.143 0.857 30 H 0.162 0.838 31 H 0.064 0.936 32 H 0.147 0.853 33 H 0.224 0.776 34 H 0.158 0.842 35 H 0.145 0.855 36 H 0.076 0.924 37 H 0.141 0.859 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.020 -19.621 10.386 22.561 hybrid contribution 0.571 4.047 -0.805 4.166 sum -3.450 -15.574 9.580 18.607 Atomic orbital electron populations 1.23458 0.75704 1.05548 1.01624 1.86507 1.24247 1.32351 1.84545 1.24874 0.93314 0.81692 0.73102 1.90844 1.66977 1.37407 1.43357 1.22027 0.86808 0.86920 1.07948 1.43046 1.55610 1.09161 1.07465 1.19356 1.44370 0.97827 0.88913 0.88854 1.26146 0.93202 1.00223 0.98580 1.70075 1.23780 1.18836 1.34162 0.85297 0.78461 0.78460 0.78500 1.17258 1.20174 1.22268 1.18705 0.81253 0.87503 0.84362 1.90596 1.53685 1.16627 1.84620 1.20493 0.97190 0.96416 0.94943 1.21852 0.98600 0.95356 0.99808 1.21393 0.95022 0.97877 0.89603 1.28269 1.01520 1.08301 1.17336 1.68601 0.86732 1.02101 0.80660 1.27810 1.13610 1.09933 1.14621 1.92974 1.32769 1.83244 1.82749 1.21034 0.98047 0.93900 0.95503 1.21144 0.97805 0.99753 0.94664 0.83933 0.92597 0.93717 0.85709 0.83810 0.93612 0.85343 0.77635 0.84192 0.85472 0.92363 0.85935 0.87413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.56 113.37 1.20 1.87 16 2 O -0.36 -10.21 10.57 -51.45 -0.54 -10.76 16 3 C 0.43 16.51 5.96 71.24 0.42 16.94 16 4 O -0.50 -24.90 15.89 21.98 0.35 -24.55 16 5 C 0.09 3.28 5.47 85.64 0.47 3.75 16 6 N -0.43 -22.04 2.11 -643.00 -1.36 -23.40 16 7 C -0.38 -21.18 8.84 84.10 0.74 -20.44 16 8 H 0.09 4.89 7.92 -2.91 -0.02 4.86 16 9 C 0.03 1.67 4.29 84.96 0.36 2.04 16 10 N -0.84 -53.33 11.70 21.68 0.25 -53.08 16 11 Si 0.97 46.87 29.61 68.60 2.03 48.90 16 12 H -0.25 -11.08 7.11 99.48 0.71 -10.37 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 15 C 0.49 26.57 6.82 86.75 0.59 27.16 16 16 O -0.57 -36.85 14.36 -4.01 -0.06 -36.90 16 17 C -0.09 -3.66 5.39 -20.09 -0.11 -3.77 16 18 C -0.14 -4.34 7.36 22.54 0.17 -4.17 16 19 C -0.02 -0.42 9.73 22.23 0.22 -0.20 16 20 C -0.46 -10.54 5.62 22.34 0.13 -10.41 16 21 S 1.42 19.95 14.18 -56.49 -0.80 19.15 16 22 C -0.50 -6.01 10.70 113.37 1.21 -4.80 16 23 O -0.92 -26.42 16.88 -148.98 -2.52 -28.94 16 24 C -0.07 -2.12 9.42 22.23 0.21 -1.91 16 25 C -0.11 -4.49 9.62 22.54 0.22 -4.27 16 26 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.06 1.28 8.13 -2.39 -0.02 1.27 16 28 H 0.04 1.13 8.13 -2.39 -0.02 1.11 16 29 H 0.13 4.00 8.12 -2.39 -0.02 3.98 16 30 H 0.14 4.45 4.33 -2.39 -0.01 4.44 16 31 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 32 H 0.13 4.14 4.00 -2.91 -0.01 4.13 16 33 H 0.21 1.31 8.06 -2.91 -0.02 1.29 16 34 H 0.14 0.97 8.14 -2.40 -0.02 0.95 16 35 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.12 3.98 7.44 -2.91 -0.02 3.95 16 38 H 0.11 4.58 8.04 -2.91 -0.02 4.56 16 Total: -1.00 -99.42 341.46 4.29 -95.14 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 1.10 Total: 12.65 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 5.83 Total: 1.78 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -1.10 Total: -76.48 kcal Atomic # 8 Polarization: -98.38 SS G_CDS: -2.77 Total: -101.14 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Atomic # 16 Polarization: 19.95 SS G_CDS: -0.80 Total: 19.15 kcal Total: -99.42 4.29 -95.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120730608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.178 kcal (2) G-P(sol) polarization free energy of solvation -99.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds