Wall clock time and date at job start Fri Apr 10 2020 14:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 117.00128 * 2 1 4 4 O 1.20828 * 119.99712 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00508 * 180.02562 * 3 2 1 6 6 N 1.46500 * 115.54836 * 325.68363 * 5 3 2 7 7 S 1.65607 * 119.99922 * 284.19636 * 6 5 3 8 8 O 1.42104 * 106.39986 * 315.31335 * 7 6 5 9 9 O 1.42099 * 106.40432 * 182.38836 * 7 6 5 10 10 C 1.76205 * 107.21415 * 68.84772 * 7 6 5 11 11 C 1.38632 * 119.74413 * 90.00402 * 10 7 6 12 12 C 1.37625 * 120.24732 * 179.97438 * 11 10 7 13 13 C 1.40719 * 119.74315 * 0.02562 * 12 11 10 14 14 C 1.41393 * 120.24719 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99273 * 347.31106 * 14 13 12 16 16 C 1.39936 * 120.00299 * 167.31104 * 14 13 12 17 17 N 1.30821 * 120.00182 * 330.31057 * 16 14 13 18 18 Si 1.86805 * 120.00159 * 150.30494 * 16 14 13 19 19 H 1.48499 * 109.46992 * 89.99790 * 18 16 14 20 20 H 1.48491 * 109.47383 * 210.00180 * 18 16 14 21 21 H 1.48503 * 109.46988 * 330.00266 * 18 16 14 22 22 C 1.40724 * 119.50909 * 0.25472 * 13 12 11 23 23 C 1.37609 * 119.74258 * 359.46604 * 22 13 12 24 24 C 1.53001 * 117.50333 * 111.35059 * 5 3 2 25 25 C 1.52998 * 117.50144 * 180.02562 * 5 3 2 26 26 H 1.09004 * 109.47068 * 299.99943 * 1 2 3 27 27 H 1.08994 * 109.47531 * 60.00634 * 1 2 3 28 28 H 1.09002 * 109.46837 * 180.02562 * 1 2 3 29 29 H 0.96995 * 120.00351 * 104.19864 * 6 5 3 30 30 H 1.08000 * 119.87996 * 359.97408 * 11 10 7 31 31 H 1.07999 * 120.13094 * 179.97438 * 12 11 10 32 32 H 0.96999 * 120.00438 * 180.02562 * 17 16 14 33 33 H 1.08001 * 120.12317 * 179.72687 * 22 13 12 34 34 H 1.08003 * 119.87591 * 180.27678 * 23 22 13 35 35 H 1.09000 * 117.50418 * 215.00501 * 24 5 3 36 36 H 1.09005 * 117.49646 * 0.02562 * 24 5 3 37 37 H 1.08999 * 117.49807 * 359.97438 * 25 5 3 38 38 H 1.09001 * 117.49912 * 144.97161 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.2547 0.2177 0.7441 7 16 4.2929 0.2609 2.3992 8 8 4.6022 1.6006 2.7585 9 8 5.0712 -0.8540 2.8119 10 6 2.6521 -0.0402 2.9667 11 6 2.2376 -1.3397 3.2139 12 6 0.9585 -1.5868 3.6579 13 6 0.0704 -0.5142 3.8602 14 6 -1.2462 -0.7558 4.3156 15 1 -1.6420 -1.7607 4.3145 16 6 -2.0364 0.3070 4.7676 17 7 -1.4741 1.3526 5.3172 18 14 -3.8941 0.2329 4.5861 19 1 -4.4849 -0.3948 5.7953 20 1 -4.4315 1.6083 4.4296 21 1 -4.2427 -0.5740 3.3891 22 6 0.5004 0.8003 3.6002 23 6 1.7857 1.0241 3.1624 24 6 4.2455 1.8056 -1.2647 25 6 4.2007 2.6672 0.0001 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 4.6882 -0.5076 0.2678 30 1 2.9208 -2.1614 3.0576 31 1 0.6374 -2.5999 3.8496 32 1 -2.0219 2.0891 5.6309 33 1 -0.1744 1.6305 3.7479 34 1 2.1194 2.0324 2.9665 35 1 5.2045 1.3682 -1.5423 36 1 3.6037 2.0981 -2.0959 37 1 3.5295 3.5261 0.0005 38 1 5.1301 2.7965 0.5547 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131750829.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:19 Heat of formation + Delta-G solvation = -112.639412 kcal Electronic energy + Delta-G solvation = -26721.849165 eV Core-core repulsion = 22850.219613 eV Total energy + Delta-G solvation = -3871.629553 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.39489 -37.71445 -37.51811 -36.44120 -35.92197 -35.14667 -34.14582 -31.95835 -30.30332 -29.41879 -27.72915 -25.84488 -24.08138 -22.70401 -21.50653 -21.11267 -20.26889 -18.90434 -17.88023 -17.64425 -17.07499 -16.68817 -16.55149 -15.87312 -15.53111 -15.33929 -14.62270 -14.28305 -14.12007 -13.46029 -13.23576 -13.12777 -12.88986 -12.51980 -12.20880 -12.05957 -11.72517 -11.68941 -11.62725 -11.49008 -11.38928 -11.35900 -11.24837 -11.15973 -10.87848 -10.79036 -10.53541 -10.37539 -10.30008 -9.78692 -9.68493 -9.33478 -9.18394 -8.05704 -7.66781 -7.28397 -4.80199 1.17972 2.23526 2.29157 2.80321 2.85766 2.86222 2.93494 2.98466 3.50702 3.59419 3.67243 4.12845 4.42614 4.60854 4.68936 4.84974 5.07339 5.30461 5.41699 5.42520 5.46329 5.64861 5.87587 5.92631 6.04211 6.08332 6.12494 6.16137 6.61634 6.70032 6.72340 6.92028 7.08064 7.16601 7.31848 7.47446 7.69233 7.77632 7.93445 8.01642 8.30029 8.49757 8.67736 9.61857 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016514 B = 0.005150 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.155195 B = 5435.294717 C = 6183.365058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.334 6.334 3 C 0.491 3.509 4 O -0.500 6.500 5 C 0.091 3.909 6 N -1.083 6.083 7 S 2.686 3.314 8 O -0.976 6.976 9 O -0.981 6.981 10 C -0.792 4.792 11 C 0.015 3.985 12 C -0.245 4.245 13 C 0.136 3.864 14 C -0.430 4.430 15 H 0.089 0.911 16 C 0.077 3.923 17 N -0.742 5.742 18 Si 0.910 3.090 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.254 1.254 22 C -0.197 4.197 23 C -0.010 4.010 24 C -0.144 4.144 25 C -0.130 4.130 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.415 0.585 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.292 0.708 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.366 0.085 -11.172 11.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.249 6.249 3 C 0.331 3.669 4 O -0.387 6.387 5 C -0.002 4.002 6 N -0.837 5.837 7 S 2.786 3.214 8 O -0.966 6.966 9 O -0.972 6.972 10 C -0.889 4.889 11 C -0.006 4.006 12 C -0.266 4.266 13 C 0.132 3.868 14 C -0.456 4.456 15 H 0.107 0.893 16 C -0.148 4.148 17 N -0.363 5.363 18 Si 0.732 3.268 19 H -0.189 1.189 20 H -0.195 1.195 21 H -0.178 1.178 22 C -0.217 4.217 23 C -0.030 4.030 24 C -0.183 4.183 25 C -0.168 4.168 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.249 0.751 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.140 0.860 34 H 0.116 0.884 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.138 0.862 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.826 0.908 -10.451 11.167 hybrid contribution -1.680 -0.533 -0.134 1.768 sum 2.146 0.375 -10.585 10.807 Atomic orbital electron populations 1.23316 0.75948 1.03861 1.02500 1.86486 1.23453 1.32005 1.82915 1.22571 0.89720 0.82080 0.72528 1.90659 1.65993 1.36529 1.45491 1.19578 0.85266 0.91914 1.03443 1.55326 1.68385 1.33899 1.26061 1.01490 0.75446 0.73047 0.71429 1.93488 1.84581 1.37259 1.81298 1.93503 1.70114 1.53798 1.79784 1.28921 1.23351 1.00648 1.35955 1.20059 0.95144 0.93145 0.92217 1.20865 0.94366 0.97607 1.13721 1.17768 0.91456 0.91696 0.85847 1.19959 0.97045 0.95384 1.33167 0.89286 1.26219 1.02669 0.94323 0.91619 1.69886 1.39790 1.06092 1.20490 0.86269 0.80721 0.79289 0.80537 1.18853 1.19475 1.17780 1.21325 0.95616 0.97466 1.07335 1.20188 0.93609 0.95074 0.94151 1.23396 1.02105 1.01756 0.90997 1.23615 1.03222 0.91559 0.98420 0.90704 0.92735 0.88213 0.75076 0.88063 0.88451 0.89678 0.86043 0.88413 0.86650 0.87267 0.86181 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.56 101.05 1.07 1.66 16 2 O -0.33 -5.81 10.39 -39.25 -0.41 -6.22 16 3 C 0.49 8.57 5.93 36.00 0.21 8.79 16 4 O -0.50 -9.63 16.01 -18.75 -0.30 -9.93 16 5 C 0.09 1.35 2.54 -132.97 -0.34 1.01 16 6 N -1.08 -16.37 5.83 -0.40 0.00 -16.37 16 7 S 2.69 52.63 5.76 -107.50 -0.62 52.01 16 8 O -0.98 -20.82 15.75 -57.17 -0.90 -21.72 16 9 O -0.98 -20.83 17.26 -57.17 -0.99 -21.82 16 10 C -0.79 -17.65 5.32 -39.29 -0.21 -17.85 16 11 C 0.01 0.32 9.49 -39.66 -0.38 -0.05 16 12 C -0.25 -5.69 9.80 -38.87 -0.38 -6.07 16 13 C 0.14 3.36 5.66 -106.82 -0.60 2.76 16 14 C -0.43 -10.23 9.01 -37.75 -0.34 -10.57 16 15 H 0.09 2.00 8.00 -52.48 -0.42 1.58 16 16 C 0.08 1.74 4.99 -17.35 -0.09 1.65 16 17 N -0.74 -17.45 11.00 55.55 0.61 -16.84 16 18 Si 0.91 16.47 29.65 -169.99 -5.04 11.43 16 19 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 20 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 21 H -0.25 -4.55 7.11 56.52 0.40 -4.15 16 22 C -0.20 -4.92 8.66 -38.87 -0.34 -5.26 16 23 C -0.01 -0.23 8.40 -39.67 -0.33 -0.57 16 24 C -0.14 -1.49 10.17 -26.68 -0.27 -1.76 16 25 C -0.13 -1.71 9.14 -26.68 -0.24 -1.95 16 26 H 0.07 1.39 7.95 -51.93 -0.41 0.98 16 27 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 28 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.42 4.98 8.96 -34.47 -0.31 4.67 16 30 H 0.10 2.06 7.60 -52.49 -0.40 1.66 16 31 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 32 H 0.29 6.12 8.30 -40.82 -0.34 5.79 16 33 H 0.12 3.12 5.81 -52.49 -0.30 2.82 16 34 H 0.10 2.29 7.60 -52.48 -0.40 1.89 16 35 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.12 1.58 7.67 -51.93 -0.40 1.19 16 38 H 0.12 1.58 7.69 -51.93 -0.40 1.18 16 LS Contribution 342.82 15.07 5.17 5.17 Total: -1.00 -30.62 342.82 -9.01 -39.63 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -4.29 Total: 12.87 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: -2.24 Total: -28.21 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 0.61 Total: -33.21 kcal Atomic # 8 Polarization: -57.09 SS G_CDS: -2.60 Total: -59.68 kcal Atomic # 14 Polarization: 16.47 SS G_CDS: -5.04 Total: 11.43 kcal Atomic # 16 Polarization: 52.63 SS G_CDS: -0.62 Total: 52.01 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.62 -9.01 -39.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131750829.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.008 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds