Wall clock time and date at job start Fri Apr 10 2020 14:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 117.00128 * 2 1 4 4 O 1.20828 * 119.99712 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00508 * 180.02562 * 3 2 1 6 6 N 1.46500 * 115.54836 * 325.68363 * 5 3 2 7 7 S 1.65607 * 119.99922 * 284.19636 * 6 5 3 8 8 O 1.42104 * 106.39986 * 315.31335 * 7 6 5 9 9 O 1.42099 * 106.40432 * 182.38836 * 7 6 5 10 10 C 1.76205 * 107.21415 * 68.84772 * 7 6 5 11 11 C 1.38632 * 119.74413 * 90.00402 * 10 7 6 12 12 C 1.37625 * 120.24732 * 179.97438 * 11 10 7 13 13 C 1.40719 * 119.74315 * 0.02562 * 12 11 10 14 14 C 1.41393 * 120.24719 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99273 * 347.31106 * 14 13 12 16 16 C 1.39936 * 120.00299 * 167.31104 * 14 13 12 17 17 N 1.30821 * 120.00182 * 330.31057 * 16 14 13 18 18 Si 1.86805 * 120.00159 * 150.30494 * 16 14 13 19 19 H 1.48499 * 109.46992 * 89.99790 * 18 16 14 20 20 H 1.48491 * 109.47383 * 210.00180 * 18 16 14 21 21 H 1.48503 * 109.46988 * 330.00266 * 18 16 14 22 22 C 1.40724 * 119.50909 * 0.25472 * 13 12 11 23 23 C 1.37609 * 119.74258 * 359.46604 * 22 13 12 24 24 C 1.53001 * 117.50333 * 111.35059 * 5 3 2 25 25 C 1.52998 * 117.50144 * 180.02562 * 5 3 2 26 26 H 1.09004 * 109.47068 * 299.99943 * 1 2 3 27 27 H 1.08994 * 109.47531 * 60.00634 * 1 2 3 28 28 H 1.09002 * 109.46837 * 180.02562 * 1 2 3 29 29 H 0.96995 * 120.00351 * 104.19864 * 6 5 3 30 30 H 1.08000 * 119.87996 * 359.97408 * 11 10 7 31 31 H 1.07999 * 120.13094 * 179.97438 * 12 11 10 32 32 H 0.96999 * 120.00438 * 180.02562 * 17 16 14 33 33 H 1.08001 * 120.12317 * 179.72687 * 22 13 12 34 34 H 1.08003 * 119.87591 * 180.27678 * 23 22 13 35 35 H 1.09000 * 117.50418 * 215.00501 * 24 5 3 36 36 H 1.09005 * 117.49646 * 0.02562 * 24 5 3 37 37 H 1.08999 * 117.49807 * 359.97438 * 25 5 3 38 38 H 1.09001 * 117.49912 * 144.97161 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.2547 0.2177 0.7441 7 16 4.2929 0.2609 2.3992 8 8 4.6022 1.6006 2.7585 9 8 5.0712 -0.8540 2.8119 10 6 2.6521 -0.0402 2.9667 11 6 2.2376 -1.3397 3.2139 12 6 0.9585 -1.5868 3.6579 13 6 0.0704 -0.5142 3.8602 14 6 -1.2462 -0.7558 4.3156 15 1 -1.6420 -1.7607 4.3145 16 6 -2.0364 0.3070 4.7676 17 7 -1.4741 1.3526 5.3172 18 14 -3.8941 0.2329 4.5861 19 1 -4.4849 -0.3948 5.7953 20 1 -4.4315 1.6083 4.4296 21 1 -4.2427 -0.5740 3.3891 22 6 0.5004 0.8003 3.6002 23 6 1.7857 1.0241 3.1624 24 6 4.2455 1.8056 -1.2647 25 6 4.2007 2.6672 0.0001 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 4.6882 -0.5076 0.2678 30 1 2.9208 -2.1614 3.0576 31 1 0.6374 -2.5999 3.8496 32 1 -2.0219 2.0891 5.6309 33 1 -0.1744 1.6305 3.7479 34 1 2.1194 2.0324 2.9665 35 1 5.2045 1.3682 -1.5423 36 1 3.6037 2.0981 -2.0959 37 1 3.5295 3.5261 0.0005 38 1 5.1301 2.7965 0.5547 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131750829.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:18 Heat of formation + Delta-G solvation = -133.151957 kcal Electronic energy + Delta-G solvation = -26722.738656 eV Core-core repulsion = 22850.219613 eV Total energy + Delta-G solvation = -3872.519043 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.69434 -39.35543 -38.86414 -38.06933 -37.28699 -36.81288 -35.89889 -33.17881 -32.10757 -31.24946 -29.02369 -27.63304 -25.31679 -23.64403 -23.27789 -22.93553 -21.58131 -20.37420 -19.46200 -19.19332 -18.58581 -18.23200 -17.96118 -17.26207 -17.17620 -16.64945 -16.06787 -15.86728 -15.39403 -15.21325 -14.95188 -14.37929 -14.24091 -14.15266 -14.01456 -13.46232 -13.40492 -13.18076 -13.07915 -13.02030 -13.01383 -12.90626 -12.52232 -12.48613 -12.36300 -12.11768 -12.04351 -11.73795 -11.55315 -11.43940 -11.28884 -11.08561 -10.58180 -9.87382 -9.51757 -9.00035 -6.62798 -0.38095 0.53445 0.94995 1.12642 1.31260 1.40022 1.51176 1.65078 2.04973 2.09780 2.42245 2.60949 2.90235 3.36433 3.56416 3.61232 3.64787 3.78869 4.11177 4.24865 4.28458 4.35486 4.36848 4.65552 4.71861 4.84511 4.85969 4.93158 4.93910 5.12032 5.12692 5.27439 5.39460 5.50311 5.64863 5.81267 5.93963 6.07608 6.13609 6.48017 6.67242 6.68440 6.84616 7.94555 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016514 B = 0.005150 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.155195 B = 5435.294717 C = 6183.365058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.340 6.340 3 C 0.485 3.515 4 O -0.528 6.528 5 C 0.056 3.944 6 N -1.062 6.062 7 S 2.715 3.285 8 O -0.994 6.994 9 O -0.995 6.995 10 C -0.805 4.805 11 C 0.011 3.989 12 C -0.259 4.259 13 C 0.114 3.886 14 C -0.454 4.454 15 H 0.097 0.903 16 C 0.040 3.960 17 N -0.778 5.778 18 Si 0.984 3.016 19 H -0.254 1.254 20 H -0.265 1.265 21 H -0.249 1.249 22 C -0.217 4.217 23 C -0.012 4.012 24 C -0.096 4.096 25 C -0.142 4.142 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.433 0.567 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.301 0.699 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.152 0.848 36 H 0.128 0.872 37 H 0.112 0.888 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.825 -0.640 -13.037 13.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.255 6.255 3 C 0.327 3.673 4 O -0.417 6.417 5 C -0.036 4.036 6 N -0.821 5.821 7 S 2.812 3.188 8 O -0.984 6.984 9 O -0.985 6.985 10 C -0.898 4.898 11 C -0.009 4.009 12 C -0.279 4.279 13 C 0.110 3.890 14 C -0.480 4.480 15 H 0.115 0.885 16 C -0.182 4.182 17 N -0.399 5.399 18 Si 0.802 3.198 19 H -0.178 1.178 20 H -0.190 1.190 21 H -0.173 1.173 22 C -0.238 4.238 23 C -0.032 4.032 24 C -0.134 4.134 25 C -0.181 4.181 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.137 0.863 29 H 0.271 0.729 30 H 0.140 0.860 31 H 0.129 0.871 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.170 0.830 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.279 0.148 -12.298 13.022 hybrid contribution -1.731 -0.272 0.399 1.797 sum 2.548 -0.124 -11.899 12.170 Atomic orbital electron populations 1.23388 0.75620 1.04961 1.01803 1.86480 1.23969 1.32273 1.82800 1.23182 0.90904 0.81627 0.71602 1.90639 1.66873 1.37257 1.46901 1.19847 0.83797 0.92621 1.07373 1.54714 1.68065 1.34919 1.24374 1.00624 0.73754 0.72204 0.72245 1.93466 1.84301 1.38208 1.82406 1.93479 1.69848 1.54278 1.80931 1.29383 1.24597 1.00190 1.35674 1.20327 0.95202 0.93816 0.91531 1.21082 0.94785 0.97932 1.14107 1.18036 0.92406 0.91904 0.86663 1.20265 0.97372 0.96421 1.33900 0.88518 1.27125 1.07319 0.93379 0.90426 1.69912 1.41913 1.06947 1.21100 0.85167 0.74356 0.79461 0.80791 1.17818 1.18972 1.17251 1.21257 0.96108 0.97427 1.08966 1.20168 0.93608 0.95307 0.94140 1.23698 1.02905 0.97471 0.89331 1.23719 1.02869 0.90546 1.00938 0.94110 0.90673 0.86265 0.72908 0.85965 0.87126 0.88778 0.87765 0.89106 0.83040 0.85434 0.86927 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.15 10.56 113.37 1.20 2.34 16 2 O -0.34 -11.68 10.39 -51.39 -0.53 -12.22 16 3 C 0.48 16.67 5.93 71.23 0.42 17.09 16 4 O -0.53 -20.59 16.01 21.96 0.35 -20.24 16 5 C 0.06 1.56 2.54 2.86 0.01 1.57 16 6 N -1.06 -29.73 5.83 -155.19 -0.90 -30.64 16 7 S 2.72 103.59 5.76 -56.49 -0.33 103.27 16 8 O -0.99 -41.87 15.75 -128.00 -2.02 -43.89 16 9 O -0.99 -40.61 17.26 -128.00 -2.21 -42.82 16 10 C -0.80 -36.08 5.32 22.46 0.12 -35.96 16 11 C 0.01 0.49 9.49 22.22 0.21 0.70 16 12 C -0.26 -12.18 9.80 22.73 0.22 -11.95 16 13 C 0.11 5.79 5.66 -21.29 -0.12 5.67 16 14 C -0.45 -22.13 9.01 23.46 0.21 -21.92 16 15 H 0.10 4.40 8.00 -2.91 -0.02 4.37 16 16 C 0.04 1.84 4.99 85.25 0.43 2.26 16 17 N -0.78 -37.73 11.00 21.82 0.24 -37.49 16 18 Si 0.98 33.67 29.65 68.60 2.03 35.71 16 19 H -0.25 -8.27 7.11 99.48 0.71 -7.56 16 20 H -0.27 -8.80 7.11 99.48 0.71 -8.09 16 21 H -0.25 -8.26 7.11 99.48 0.71 -7.55 16 22 C -0.22 -11.36 8.66 22.73 0.20 -11.17 16 23 C -0.01 -0.59 8.40 22.21 0.19 -0.41 16 24 C -0.10 -1.60 10.17 30.63 0.31 -1.28 16 25 C -0.14 -3.47 9.14 30.63 0.28 -3.19 16 26 H 0.04 1.58 7.95 -2.38 -0.02 1.56 16 27 H 0.07 2.04 8.13 -2.39 -0.02 2.02 16 28 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 29 H 0.43 8.98 8.96 -96.75 -0.87 8.11 16 30 H 0.12 4.83 7.60 -2.91 -0.02 4.80 16 31 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 32 H 0.30 12.96 8.30 -92.71 -0.77 12.20 16 33 H 0.10 5.71 5.81 -2.91 -0.02 5.69 16 34 H 0.09 4.47 7.60 -2.91 -0.02 4.45 16 35 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.13 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.11 2.90 7.67 -2.39 -0.02 2.88 16 38 H 0.13 2.98 7.69 -2.39 -0.02 2.97 16 Total: -1.00 -68.10 342.82 0.55 -67.55 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: 0.24 Total: 37.00 kcal Atomic # 6 Polarization: -59.91 SS G_CDS: 3.67 Total: -56.24 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -0.66 Total: -68.12 kcal Atomic # 8 Polarization: -114.75 SS G_CDS: -4.41 Total: -119.16 kcal Atomic # 14 Polarization: 33.67 SS G_CDS: 2.03 Total: 35.71 kcal Atomic # 16 Polarization: 103.59 SS G_CDS: -0.33 Total: 103.27 kcal Total: -68.10 0.55 -67.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131750829.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.599 kcal (2) G-P(sol) polarization free energy of solvation -68.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds