Wall clock time and date at job start Fri Apr 10 2020 14:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 116.99721 * 2 1 4 4 O 1.20829 * 120.00702 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99790 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47002 * 55.00277 * 5 3 2 7 7 O 1.42900 * 109.47004 * 175.00468 * 5 3 2 8 8 C 1.52998 * 109.47114 * 295.00330 * 5 3 2 9 9 N 1.46498 * 109.47029 * 180.02562 * 8 5 3 10 10 C 1.34777 * 120.00005 * 180.02562 * 9 8 5 11 11 O 1.21610 * 120.00253 * 359.97438 * 10 9 8 12 12 C 1.47426 * 120.00023 * 179.97438 * 10 9 8 13 13 C 1.39672 * 120.21634 * 0.02562 * 12 10 9 14 14 C 1.37809 * 119.94038 * 180.02562 * 13 12 10 15 15 C 1.38657 * 120.38308 * 359.97226 * 14 13 12 16 16 C 1.37913 * 120.43296 * 0.02562 * 15 14 13 17 17 C 1.39105 * 120.05439 * 359.97438 * 16 15 14 18 18 S 1.76205 * 120.19168 * 179.97438 * 17 16 15 19 19 C 1.76202 * 99.99800 * 6.86957 * 18 17 16 20 20 H 1.07995 * 120.00295 * 5.65288 * 19 18 17 21 21 C 1.38803 * 119.99855 * 185.66146 * 19 18 17 22 22 N 1.31557 * 120.00018 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99867 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47200 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46826 * 119.99688 * 23 21 19 26 26 H 1.48501 * 109.47077 * 239.99394 * 23 21 19 27 27 H 1.09001 * 109.47165 * 59.99641 * 1 2 3 28 28 H 1.08999 * 109.47367 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46867 * 299.99929 * 1 2 3 30 30 H 0.96698 * 114.00297 * 59.99566 * 7 5 3 31 31 H 1.09001 * 109.47164 * 59.99531 * 8 5 3 32 32 H 1.09003 * 109.47143 * 299.99861 * 8 5 3 33 33 H 0.96996 * 120.00303 * 359.97438 * 9 8 5 34 34 H 1.08007 * 120.02825 * 359.97438 * 13 12 10 35 35 H 1.08007 * 119.80710 * 179.97438 * 14 13 12 36 36 H 1.07997 * 119.78390 * 179.74245 * 15 14 13 37 37 H 1.08002 * 119.97414 * 180.02562 * 16 15 14 38 38 H 0.97003 * 119.99998 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9597 0.7055 -0.8427 7 8 3.9717 2.6402 -0.1178 8 6 4.1081 0.6925 1.3064 9 7 5.5710 0.7697 1.3061 10 6 6.2703 0.3117 2.3633 11 8 5.6868 -0.1652 3.3178 12 6 7.7425 0.3890 2.3628 13 6 8.4172 0.9363 1.2692 14 6 9.7936 1.0052 1.2744 15 6 10.5152 0.5343 2.3607 16 6 9.8649 -0.0092 3.4488 17 6 8.4762 -0.0876 3.4626 18 16 7.6416 -0.7819 4.8505 19 6 9.0022 -0.9972 5.9493 20 1 9.9795 -0.6264 5.6778 21 6 8.8180 -1.6437 7.1637 22 7 7.6274 -2.0951 7.4946 23 14 10.2605 -1.8726 8.3282 24 1 11.4814 -1.2789 7.7265 25 1 9.9670 -1.1982 9.6183 26 1 10.4797 -3.3220 8.5658 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.6565 3.2070 0.5994 31 1 3.7988 -0.3489 1.3958 32 1 3.7147 1.2619 2.1485 33 1 6.0365 1.1498 0.5447 34 1 7.8608 1.3045 0.4198 35 1 10.3132 1.4286 0.4275 36 1 11.5937 0.5893 2.3529 37 1 10.4343 -0.3734 4.2911 38 1 7.4986 -2.5465 8.3434 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227047660.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:37 Heat of formation + Delta-G solvation = -164.480369 kcal Electronic energy + Delta-G solvation = -24293.965136 eV Core-core repulsion = 20420.087590 eV Total energy + Delta-G solvation = -3873.877545 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.85489 -40.94575 -39.09105 -38.46285 -37.35961 -35.40857 -34.75092 -32.49010 -31.75484 -30.91135 -28.43949 -27.82486 -25.82046 -24.07793 -23.30572 -22.37389 -21.56513 -20.02321 -19.29044 -18.95509 -18.48468 -17.67801 -17.40308 -17.06602 -16.82358 -16.71718 -16.36146 -15.68744 -15.57000 -15.44611 -15.26037 -14.76474 -14.67210 -14.36030 -14.20719 -13.86382 -13.32385 -13.30347 -13.22127 -12.99721 -12.91875 -12.84150 -12.52555 -12.12297 -12.02361 -11.88177 -11.54007 -11.42526 -11.36751 -11.17994 -10.39250 -10.19824 -9.90944 -9.74621 -8.44804 -8.43954 -6.22685 0.05904 0.57273 0.86335 1.28032 1.35905 1.46456 1.48874 1.66985 2.02713 2.15972 2.26945 2.88954 3.06533 3.13639 3.26091 3.38383 3.64731 3.87470 3.98435 4.05982 4.25377 4.30126 4.30488 4.56890 4.59203 4.65068 4.69669 4.70550 4.88903 5.14019 5.20344 5.38191 5.38738 5.48989 5.59793 5.70968 6.12143 6.18864 6.28494 6.53430 6.62030 6.97416 7.34639 8.61383 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.003056 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.511157 B = 9160.431552 C =10661.111884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.441 3.559 4 O -0.525 6.525 5 C 0.128 3.872 6 H 0.175 0.825 7 O -0.532 6.532 8 C 0.099 3.901 9 N -0.706 5.706 10 C 0.549 3.451 11 O -0.554 6.554 12 C -0.181 4.181 13 C -0.051 4.051 14 C -0.158 4.158 15 C -0.070 4.070 16 C -0.176 4.176 17 C -0.072 4.072 18 S 0.065 5.935 19 C -0.601 4.601 20 H 0.094 0.906 21 C 0.024 3.976 22 N -0.905 5.905 23 Si 0.992 3.008 24 H -0.257 1.257 25 H -0.272 1.272 26 H -0.270 1.270 27 H 0.068 0.932 28 H 0.130 0.870 29 H 0.060 0.940 30 H 0.397 0.603 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.418 0.582 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.148 0.852 37 H 0.118 0.882 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.290 6.563 -19.583 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.283 3.717 4 O -0.414 6.414 5 C 0.066 3.934 6 H 0.192 0.808 7 O -0.339 6.339 8 C -0.026 4.026 9 N -0.362 5.362 10 C 0.338 3.662 11 O -0.434 6.434 12 C -0.195 4.195 13 C -0.071 4.071 14 C -0.181 4.181 15 C -0.091 4.091 16 C -0.201 4.201 17 C -0.190 4.190 18 S 0.323 5.677 19 C -0.748 4.748 20 H 0.112 0.888 21 C -0.181 4.181 22 N -0.540 5.540 23 Si 0.814 3.186 24 H -0.181 1.181 25 H -0.197 1.197 26 H -0.195 1.195 27 H 0.087 0.913 28 H 0.148 0.852 29 H 0.079 0.921 30 H 0.248 0.752 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.257 0.743 34 H 0.181 0.819 35 H 0.183 0.817 36 H 0.166 0.834 37 H 0.135 0.865 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.090 5.806 -18.835 20.947 hybrid contribution 1.320 0.295 1.297 1.874 sum -5.771 6.101 -17.538 19.445 Atomic orbital electron populations 1.23599 0.74503 1.05884 1.02696 1.86536 1.25287 1.32485 1.83091 1.24830 0.93333 0.81738 0.71780 1.90696 1.67387 1.37244 1.46032 1.21707 0.84929 0.85985 1.00736 0.80802 1.86628 1.75736 1.17610 1.53926 1.21791 0.81104 1.02983 0.96688 1.45348 1.05986 1.64226 1.20593 1.18450 0.87606 0.77753 0.82383 1.90805 1.71267 1.45977 1.35371 1.19440 0.91898 1.10678 0.97457 1.21469 0.95362 0.94709 0.95566 1.21334 0.93610 1.03471 0.99656 1.21539 1.01027 0.94293 0.92198 1.21442 0.92901 1.04773 1.01031 1.22985 0.97779 0.99228 0.98984 1.84885 1.10793 1.67715 1.04273 1.24278 0.99592 1.44221 1.06660 0.88835 1.26128 0.99723 0.93173 0.99105 1.70133 1.23981 1.36274 1.23601 0.85002 0.77732 0.78477 0.77403 1.18098 1.19686 1.19486 0.91307 0.85175 0.92088 0.75193 0.89516 0.91723 0.74301 0.81931 0.81701 0.83440 0.86483 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.36 -6.30 10.56 -51.37 -0.54 -6.84 16 3 C 0.44 8.31 7.27 71.24 0.52 8.83 16 4 O -0.52 -12.67 16.07 28.37 0.46 -12.21 16 5 C 0.13 1.89 3.58 29.85 0.11 1.99 16 6 H 0.18 1.60 8.14 -2.39 -0.02 1.58 16 7 O -0.53 -8.15 12.74 -129.95 -1.66 -9.80 16 8 C 0.10 2.07 5.32 86.38 0.46 2.53 16 9 N -0.71 -16.74 5.40 -466.37 -2.52 -19.25 16 10 C 0.55 20.13 7.75 86.66 0.67 20.80 16 11 O -0.55 -26.25 13.77 -4.06 -0.06 -26.31 16 12 C -0.18 -6.69 5.89 -19.95 -0.12 -6.81 16 13 C -0.05 -1.30 9.53 22.51 0.21 -1.09 16 14 C -0.16 -3.70 10.02 22.27 0.22 -3.48 16 15 C -0.07 -2.04 10.03 22.29 0.22 -1.82 16 16 C -0.18 -7.21 9.22 22.40 0.21 -7.00 16 17 C -0.07 -3.29 6.14 23.04 0.14 -3.15 16 18 S 0.06 3.69 18.56 -56.49 -1.05 2.64 16 19 C -0.60 -34.90 9.00 67.96 0.61 -34.29 16 20 H 0.09 5.14 4.98 -2.91 -0.01 5.13 16 21 C 0.02 1.39 5.49 84.87 0.47 1.85 16 22 N -0.90 -55.16 13.22 21.65 0.29 -54.87 16 23 Si 0.99 43.81 29.55 68.60 2.03 45.84 16 24 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 28 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.84 8.13 -2.38 -0.02 0.82 16 30 H 0.40 5.12 8.79 -74.06 -0.65 4.47 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.42 6.92 6.38 -92.71 -0.59 6.33 16 34 H 0.16 2.50 6.40 -2.91 -0.02 2.48 16 35 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 37 H 0.12 5.23 5.03 -2.91 -0.01 5.21 16 38 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -82.83 345.84 1.77 -81.06 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.10 Total: 19.86 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 4.92 Total: -20.11 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -2.23 Total: -74.13 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -1.80 Total: -55.17 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.05 Total: 2.64 kcal Total: -82.83 1.77 -81.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227047660.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.416 kcal (2) G-P(sol) polarization free energy of solvation -82.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds