Wall clock time and date at job start Fri Apr 10 2020 14:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42098 * 110.54242 * 2 1 4 4 O 1.42093 * 110.54261 * 223.24526 * 2 1 3 5 5 C 1.76203 * 104.44960 * 111.62276 * 2 1 3 6 6 C 1.38374 * 119.92749 * 270.02005 * 5 2 1 7 7 C 1.38345 * 120.29398 * 179.97438 * 6 5 2 8 8 C 1.37980 * 120.14082 * 359.78809 * 7 6 5 9 9 C 1.39562 * 119.85449 * 0.44466 * 8 7 6 10 10 C 1.47845 * 120.14331 * 179.81481 * 9 8 7 11 11 O 1.21553 * 119.99549 * 172.84655 * 10 9 8 12 12 N 1.34773 * 119.99841 * 352.83766 * 10 9 8 13 13 C 1.47581 * 134.48625 * 174.46249 * 12 10 9 14 14 C 1.53945 * 86.11710 * 155.36091 * 13 12 10 15 15 O 1.42898 * 113.74437 * 269.15630 * 14 13 12 16 16 C 1.50701 * 113.74161 * 137.94771 * 14 13 12 17 17 H 1.07997 * 120.00470 * 1.93007 * 16 14 13 18 18 C 1.37882 * 119.99532 * 181.92655 * 16 14 13 19 19 N 1.31512 * 120.00233 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99590 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46786 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.46800 * 299.99844 * 20 18 16 23 23 H 1.48496 * 109.47271 * 59.99897 * 20 18 16 24 24 C 1.47807 * 134.46079 * 354.33528 * 12 10 9 25 25 C 1.37939 * 119.92630 * 89.99904 * 5 2 1 26 26 H 1.09005 * 109.47279 * 308.37549 * 1 2 3 27 27 H 1.08997 * 109.47095 * 68.37414 * 1 2 3 28 28 H 1.09000 * 109.47264 * 188.37679 * 1 2 3 29 29 H 1.07994 * 119.85805 * 0.02562 * 6 5 2 30 30 H 1.07999 * 119.93188 * 180.02562 * 7 6 5 31 31 H 1.08002 * 120.07487 * 180.23558 * 8 7 6 32 32 H 1.08999 * 113.77164 * 41.06131 * 13 12 10 33 33 H 1.09007 * 113.87439 * 269.67043 * 13 12 10 34 34 H 0.96701 * 114.00371 * 178.07173 * 15 14 13 35 35 H 0.97007 * 119.99927 * 180.02562 * 19 18 16 36 36 H 1.08996 * 113.76911 * 90.37474 * 24 12 10 37 37 H 1.08999 * 113.83791 * 318.91199 * 24 12 10 38 38 H 1.08001 * 120.07335 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9116 5 6 2.2536 -0.6288 1.5862 6 6 2.4255 0.2397 2.6497 7 6 2.7702 -0.2458 3.8985 8 6 2.9406 -1.6013 4.0920 9 6 2.7735 -2.4822 3.0225 10 6 2.9586 -3.9354 3.2218 11 8 2.6871 -4.7110 2.3261 12 7 3.4284 -4.4001 4.3964 13 6 3.6344 -5.7447 4.9687 14 6 4.7034 -5.0871 5.8602 15 8 6.0153 -5.1054 5.2941 16 6 4.6743 -5.5592 7.2910 17 1 3.9670 -6.3164 7.5957 18 6 5.5507 -5.0243 8.2113 19 7 6.4117 -4.1019 7.8405 20 14 5.5151 -5.6099 9.9849 21 1 6.5483 -4.8842 10.7666 22 1 4.1756 -5.3426 10.5675 23 1 5.7927 -7.0680 10.0304 24 6 3.9463 -3.7670 5.6275 25 6 2.4253 -1.9857 1.7652 26 1 -0.3634 0.6380 0.8057 27 1 -0.3633 0.3787 -0.9553 28 1 -0.3634 -1.0167 0.1497 29 1 2.2892 1.3011 2.5045 30 1 2.9024 0.4373 4.7245 31 1 3.2059 -1.9795 5.0683 32 1 4.0379 -6.4671 4.2592 33 1 2.7753 -6.1254 5.5211 34 1 6.6845 -4.6673 5.8376 35 1 7.0286 -3.7259 8.4880 36 1 3.1782 -3.5637 6.3736 37 1 4.5984 -2.9132 5.4431 38 1 2.2902 -2.6625 0.9345 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331947657.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:19 Heat of formation + Delta-G solvation = -103.077491 kcal Electronic energy + Delta-G solvation = -25140.031361 eV Core-core repulsion = 21268.816444 eV Total energy + Delta-G solvation = -3871.214917 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65125 -40.04330 -38.82160 -38.16331 -37.00623 -35.92453 -34.17135 -32.95333 -32.29898 -30.33323 -30.16489 -27.33724 -27.29276 -24.79652 -24.05103 -22.01432 -20.82182 -19.86410 -19.34660 -18.72637 -17.96739 -17.24473 -17.21328 -17.14248 -16.73840 -16.61737 -16.44329 -15.98824 -15.65730 -15.15840 -14.95492 -14.50303 -14.32129 -14.07340 -13.93448 -13.91033 -13.70293 -13.44848 -13.34030 -13.16530 -13.11472 -12.88537 -12.77948 -12.71670 -12.26606 -12.24053 -12.08750 -11.72013 -11.44466 -11.07875 -10.66539 -10.55405 -10.30054 -10.20757 -9.64263 -8.27498 -6.44730 -0.89582 -0.46112 -0.12649 1.48375 1.51280 1.57660 1.59966 1.76471 1.88210 2.40196 2.48984 2.94544 3.00502 3.09380 3.32054 3.66594 3.72790 3.86267 3.99992 4.07064 4.11900 4.14039 4.26143 4.40331 4.45606 4.54515 4.68601 4.70844 4.78518 4.83247 4.95537 4.97551 5.07388 5.13694 5.19055 5.63891 5.71211 5.90397 6.60888 6.68045 6.97144 7.28557 7.41492 8.78380 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.026367 B = 0.002962 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.681660 B = 9450.642154 C = 9960.680235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.621 4.621 2 S 2.510 3.490 3 O -0.964 6.964 4 O -0.982 6.982 5 C -0.670 4.670 6 C 0.000 4.000 7 C -0.138 4.138 8 C -0.052 4.052 9 C -0.167 4.167 10 C 0.561 3.439 11 O -0.593 6.593 12 N -0.629 5.629 13 C 0.111 3.889 14 C 0.219 3.781 15 O -0.588 6.588 16 C -0.557 4.557 17 H 0.074 0.926 18 C 0.036 3.964 19 N -0.915 5.915 20 Si 0.968 3.032 21 H -0.284 1.284 22 H -0.265 1.265 23 H -0.278 1.278 24 C 0.086 3.914 25 C 0.014 3.986 26 H 0.162 0.838 27 H 0.159 0.841 28 H 0.146 0.854 29 H 0.180 0.820 30 H 0.174 0.826 31 H 0.148 0.852 32 H 0.058 0.942 33 H 0.111 0.889 34 H 0.388 0.612 35 H 0.276 0.724 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.226 13.345 -6.033 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.775 4.775 2 S 2.692 3.308 3 O -0.961 6.961 4 O -0.980 6.980 5 C -0.754 4.754 6 C -0.019 4.019 7 C -0.156 4.156 8 C -0.070 4.070 9 C -0.170 4.170 10 C 0.353 3.647 11 O -0.477 6.477 12 N -0.360 5.360 13 C -0.011 4.011 14 C 0.178 3.822 15 O -0.400 6.400 16 C -0.595 4.595 17 H 0.092 0.908 18 C -0.165 4.165 19 N -0.554 5.554 20 Si 0.793 3.207 21 H -0.209 1.209 22 H -0.190 1.190 23 H -0.203 1.203 24 C -0.035 4.035 25 C -0.006 4.006 26 H 0.181 0.819 27 H 0.177 0.823 28 H 0.164 0.836 29 H 0.198 0.802 30 H 0.192 0.808 31 H 0.166 0.834 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.242 0.758 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.965 13.047 -7.686 19.935 hybrid contribution 0.407 -0.789 1.921 2.116 sum -12.558 12.258 -5.766 18.472 Atomic orbital electron populations 1.30018 1.18687 1.14182 1.14623 1.04911 0.80308 0.73010 0.72577 1.93541 1.79762 1.36930 1.85875 1.93555 1.79996 1.62602 1.61824 1.30830 1.19535 1.01162 1.23879 1.21616 0.88702 1.00906 0.90628 1.21711 1.00139 0.94558 0.99199 1.22457 0.90870 0.94634 0.99071 1.20016 1.08355 0.92099 0.96552 1.18430 0.76408 0.88780 0.81123 1.90683 1.54876 1.59583 1.42574 1.50115 1.60734 1.11403 1.13776 1.23545 0.98045 0.85605 0.93861 1.20136 0.80761 0.90685 0.90583 1.86071 1.20071 1.81877 1.51973 1.21667 1.20485 1.24289 0.93038 0.90796 1.25719 0.93897 0.93765 1.03138 1.69456 1.21175 1.27666 1.37150 0.85453 0.78232 0.78208 0.78804 1.20905 1.19003 1.20321 1.24361 0.96831 1.00132 0.82210 1.20987 0.89270 0.94462 0.95895 0.81946 0.82310 0.83563 0.80226 0.80822 0.83422 0.92321 0.87152 0.75776 0.91405 0.87735 0.90685 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -3.62 10.80 113.37 1.22 -2.40 16 2 S 2.51 44.15 5.80 -56.49 -0.33 43.82 16 3 O -0.96 -21.09 17.12 -127.65 -2.18 -23.27 16 4 O -0.98 -26.86 17.12 -127.65 -2.19 -29.05 16 5 C -0.67 -14.89 5.65 22.23 0.13 -14.76 16 6 C 0.00 0.00 9.47 22.33 0.21 0.21 16 7 C -0.14 -2.78 10.03 22.23 0.22 -2.55 16 8 C -0.05 -1.46 9.08 22.53 0.20 -1.25 16 9 C -0.17 -5.70 5.87 -20.09 -0.12 -5.81 16 10 C 0.56 23.78 7.99 86.79 0.69 24.48 16 11 O -0.59 -28.65 17.10 -3.88 -0.07 -28.71 16 12 N -0.63 -26.36 3.60 -843.05 -3.03 -29.39 16 13 C 0.11 4.79 8.23 86.49 0.71 5.50 16 14 C 0.22 10.20 1.40 -10.88 -0.02 10.18 16 15 O -0.59 -30.34 13.48 -148.98 -2.01 -32.35 16 16 C -0.56 -26.57 8.61 25.60 0.22 -26.35 16 17 H 0.07 3.41 7.81 -2.91 -0.02 3.39 16 18 C 0.04 1.69 5.40 84.66 0.46 2.15 16 19 N -0.91 -44.14 11.20 21.45 0.24 -43.90 16 20 Si 0.97 37.72 29.54 68.60 2.03 39.75 16 21 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 22 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 23 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 24 C 0.09 3.46 5.60 86.44 0.48 3.94 16 25 C 0.01 0.41 9.01 22.53 0.20 0.61 16 26 H 0.16 0.12 8.14 -2.39 -0.02 0.10 16 27 H 0.16 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.18 2.02 7.56 -2.91 -0.02 2.00 16 30 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.15 4.18 4.11 -2.91 -0.01 4.17 16 32 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.11 4.19 8.09 -2.38 -0.02 4.17 16 34 H 0.39 20.09 6.60 -74.06 -0.49 19.60 16 35 H 0.28 12.70 8.31 -92.70 -0.77 11.93 16 36 H 0.10 3.78 7.99 -2.39 -0.02 3.76 16 37 H 0.07 2.99 6.92 -2.39 -0.02 2.97 16 38 H 0.14 4.44 7.17 -2.91 -0.02 4.42 16 Total: -1.00 -74.31 338.60 -2.29 -76.60 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.63 Total: 32.57 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 4.62 Total: -6.06 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -2.79 Total: -73.29 kcal Atomic # 8 Polarization: -106.94 SS G_CDS: -6.45 Total: -113.39 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Atomic # 16 Polarization: 44.15 SS G_CDS: -0.33 Total: 43.82 kcal Total: -74.31 -2.29 -76.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331947657.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.479 kcal (2) G-P(sol) polarization free energy of solvation -74.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds