Wall clock time and date at job start Fri Apr 10 2020 14:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42103 * 110.54564 * 2 1 4 4 O 1.42098 * 110.54652 * 223.24930 * 2 1 3 5 5 C 1.76202 * 104.44939 * 111.62479 * 2 1 3 6 6 C 1.38353 * 119.85431 * 90.00342 * 5 2 1 7 7 C 1.37960 * 120.14606 * 180.02562 * 6 5 2 8 8 C 1.39573 * 119.85473 * 359.97226 * 7 6 5 9 9 C 1.47840 * 120.15013 * 179.97438 * 8 7 6 10 10 O 1.21552 * 120.00233 * 173.12385 * 9 8 7 11 11 N 1.34785 * 119.99605 * 353.12385 * 9 8 7 12 12 C 1.47581 * 134.49082 * 174.44445 * 11 9 8 13 13 C 1.53953 * 86.11551 * 155.35376 * 12 11 9 14 14 O 1.42897 * 113.74309 * 269.15468 * 13 12 11 15 15 C 1.50700 * 113.73677 * 137.94805 * 13 12 11 16 16 H 1.07996 * 120.00258 * 1.92997 * 15 13 12 17 17 C 1.37881 * 119.99691 * 181.92512 * 15 13 12 18 18 N 1.31509 * 120.00092 * 180.02562 * 17 15 13 19 19 Si 1.86797 * 119.99899 * 0.02562 * 17 15 13 20 20 H 1.48495 * 109.47433 * 269.99940 * 19 17 15 21 21 H 1.48506 * 109.47309 * 30.00269 * 19 17 15 22 22 H 1.48503 * 109.46998 * 149.99765 * 19 17 15 23 23 C 1.47812 * 134.45496 * 354.30701 * 11 9 8 24 24 C 1.39575 * 119.70861 * 0.25499 * 8 7 6 25 25 C 1.37964 * 119.85518 * 359.51336 * 24 8 7 26 26 H 1.09004 * 109.47046 * 308.37544 * 1 2 3 27 27 H 1.08999 * 109.47301 * 68.37384 * 1 2 3 28 28 H 1.08991 * 109.47135 * 188.37530 * 1 2 3 29 29 H 1.07996 * 119.93001 * 0.02562 * 6 5 2 30 30 H 1.07999 * 120.07664 * 179.97438 * 7 6 5 31 31 H 1.09001 * 113.76918 * 41.06030 * 12 11 9 32 32 H 1.08999 * 113.76816 * 269.65734 * 12 11 9 33 33 H 0.96696 * 113.99993 * 178.08009 * 14 13 12 34 34 H 0.96998 * 120.00612 * 180.02562 * 18 17 15 35 35 H 1.08995 * 113.76562 * 90.38308 * 23 11 9 36 36 H 1.09001 * 113.83965 * 318.91777 * 23 11 9 37 37 H 1.08007 * 120.07582 * 179.72527 * 24 8 7 38 38 H 1.08001 * 119.93026 * 180.22959 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.4255 -1.9901 1.7640 7 6 2.7693 -2.4890 3.0034 8 6 2.9442 -1.6171 4.0792 9 6 3.3119 -2.1447 5.4104 10 8 3.5856 -1.3786 6.3135 11 7 3.3438 -3.4754 5.6226 12 6 3.7529 -4.3332 6.7516 13 6 2.7939 -5.3845 6.1641 14 8 1.4644 -5.3035 6.6816 15 6 3.3467 -6.7864 6.1809 16 1 4.3191 -6.9784 6.6097 17 6 2.6108 -7.8239 5.6488 18 7 3.0929 -9.0474 5.6638 19 14 0.9292 -7.4917 4.9065 20 1 -0.1109 -7.6225 5.9583 21 1 0.8977 -6.1163 4.3475 22 1 0.6638 -8.4723 3.8233 23 6 2.9803 -4.6609 4.8180 24 6 2.7645 -0.2454 3.8942 25 6 2.4255 0.2410 2.6484 26 1 -0.3633 0.6380 0.8057 27 1 -0.3634 0.3787 -0.9553 28 1 -0.3633 -1.0166 0.1497 29 1 2.2904 -2.6636 0.9307 30 1 2.9028 -3.5518 3.1410 31 1 3.4449 -3.9536 7.7259 32 1 4.8015 -4.6291 6.7210 33 1 0.8517 -5.9431 6.2936 34 1 2.5754 -9.7773 5.2892 35 1 3.8014 -5.0533 4.2183 36 1 2.0567 -4.5425 4.2514 37 1 2.8940 0.4342 4.7236 38 1 2.2899 1.3025 2.5030 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332001337.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:22 Heat of formation + Delta-G solvation = -59.102384 kcal Electronic energy + Delta-G solvation = -25230.511788 eV Core-core repulsion = 21361.203775 eV Total energy + Delta-G solvation = -3869.308013 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.43806 -38.98441 -37.54431 -37.40836 -36.24226 -34.67461 -32.66235 -31.95046 -31.31981 -29.90952 -28.95872 -26.11469 -25.73320 -23.87790 -22.85674 -20.53805 -19.40318 -19.28285 -18.01296 -17.62477 -17.13260 -16.61820 -16.50722 -16.24694 -15.76056 -15.14903 -14.91461 -14.72734 -14.10266 -13.87252 -13.72865 -13.65436 -13.59252 -13.50798 -13.24816 -12.93479 -12.72042 -12.41884 -12.38275 -12.29430 -12.27032 -11.58269 -11.46040 -11.27611 -11.11556 -10.97308 -10.73267 -10.24605 -9.99225 -9.57013 -9.47676 -9.29742 -9.14124 -8.80696 -8.23787 -6.52148 -4.59456 -0.30794 0.27873 1.07315 2.49415 2.69111 2.88465 2.90336 3.04643 3.11211 3.48699 3.72297 3.77898 3.92549 4.36754 4.40240 4.41205 4.58535 4.61539 4.65991 4.94685 5.07528 5.14999 5.23276 5.36259 5.40459 5.63843 5.73093 5.78281 5.86780 5.90429 6.02535 6.08451 6.19544 6.29624 6.44706 6.54412 7.07563 7.91873 8.01925 8.32205 8.38984 8.52098 9.04355 10.59921 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016735 B = 0.003603 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.767473 B = 7770.229158 C = 8859.083556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.503 3.497 3 O -0.937 6.937 4 O -0.936 6.936 5 C -0.648 4.648 6 C -0.032 4.032 7 C -0.120 4.120 8 C -0.064 4.064 9 C 0.565 3.435 10 O -0.547 6.547 11 N -0.624 5.624 12 C 0.129 3.871 13 C 0.198 3.802 14 O -0.552 6.552 15 C -0.539 4.539 16 H 0.093 0.907 17 C 0.082 3.918 18 N -0.873 5.873 19 Si 0.857 3.143 20 H -0.266 1.266 21 H -0.257 1.257 22 H -0.281 1.281 23 C 0.051 3.949 24 C -0.087 4.087 25 C -0.035 4.035 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.353 0.647 34 H 0.272 0.728 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.644 14.309 -11.163 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.682 3.318 3 O -0.935 6.935 4 O -0.933 6.933 5 C -0.735 4.735 6 C -0.051 4.051 7 C -0.139 4.139 8 C -0.067 4.067 9 C 0.354 3.646 10 O -0.427 6.427 11 N -0.357 5.357 12 C 0.007 3.993 13 C 0.157 3.843 14 O -0.363 6.363 15 C -0.577 4.577 16 H 0.111 0.889 17 C -0.124 4.124 18 N -0.508 5.508 19 Si 0.685 3.315 20 H -0.192 1.192 21 H -0.182 1.182 22 H -0.208 1.208 23 C -0.072 4.072 24 C -0.106 4.106 25 C -0.053 4.053 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.165 0.835 30 H 0.170 0.830 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.205 0.795 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.163 0.837 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.699 15.410 -11.043 19.796 hybrid contribution -1.598 -0.806 -0.088 1.792 sum -7.297 14.604 -11.131 19.759 Atomic orbital electron populations 1.30219 1.25583 1.12304 1.11856 1.05120 0.77868 0.74608 0.74208 1.93588 1.77350 1.36502 1.86033 1.93598 1.77291 1.61580 1.60818 1.30679 1.17742 1.03049 1.22041 1.20939 0.93266 0.93178 0.97681 1.22191 0.97841 1.01661 0.92239 1.20457 0.97680 0.94549 0.93980 1.17857 0.78426 0.81143 0.87184 1.90743 1.51178 1.56362 1.44406 1.50078 1.62235 1.03135 1.20254 1.23373 0.99265 0.85788 0.90834 1.20536 0.81191 0.94463 0.88139 1.86477 1.21034 1.61009 1.67791 1.21211 1.06397 0.88694 1.41362 0.88926 1.25002 0.97712 0.95022 0.94679 1.69843 1.38030 0.99596 1.43323 0.87373 0.85089 0.78969 0.80091 1.19224 1.18244 1.20763 1.24940 1.00295 0.82438 0.99479 1.21413 0.97038 0.94389 0.97806 1.20893 0.93772 0.99537 0.91141 0.84891 0.84984 0.84816 0.83498 0.83025 0.90192 0.88265 0.79511 0.91750 0.88006 0.90505 0.83721 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.69 10.80 101.05 1.09 -1.60 16 2 S 2.50 20.63 5.80 -107.50 -0.62 20.01 16 3 O -0.94 -10.42 17.11 -57.54 -0.98 -11.40 16 4 O -0.94 -10.74 17.11 -57.54 -0.98 -11.72 16 5 C -0.65 -6.74 5.66 -39.49 -0.22 -6.96 16 6 C -0.03 -0.36 9.45 -39.64 -0.37 -0.74 16 7 C -0.12 -1.65 9.08 -39.19 -0.36 -2.01 16 8 C -0.06 -0.99 5.87 -104.97 -0.62 -1.60 16 9 C 0.56 10.63 7.99 -12.33 -0.10 10.53 16 10 O -0.55 -11.64 17.10 5.32 0.09 -11.54 16 11 N -0.62 -11.84 3.60 -179.21 -0.64 -12.48 16 12 C 0.13 2.52 8.23 -2.96 -0.02 2.50 16 13 C 0.20 4.22 1.06 -90.84 -0.10 4.12 16 14 O -0.55 -12.28 13.35 -35.23 -0.47 -12.75 16 15 C -0.54 -13.16 9.19 -34.44 -0.32 -13.48 16 16 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 17 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 18 N -0.87 -23.46 13.96 55.43 0.77 -22.69 16 19 Si 0.86 17.69 24.31 -169.99 -4.13 13.55 16 20 H -0.27 -5.41 7.05 56.52 0.40 -5.01 16 21 H -0.26 -4.82 5.16 56.52 0.29 -4.53 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 C 0.05 0.93 4.68 -2.84 -0.01 0.92 16 24 C -0.09 -1.15 9.59 -39.18 -0.38 -1.53 16 25 C -0.03 -0.37 9.45 -39.64 -0.37 -0.75 16 26 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.13 0.34 8.14 -51.92 -0.42 -0.09 16 28 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.15 1.36 7.56 -52.49 -0.40 0.96 16 30 H 0.15 2.06 4.10 -52.49 -0.22 1.85 16 31 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.10 1.79 8.09 -51.93 -0.42 1.37 16 33 H 0.35 7.43 3.57 45.56 0.16 7.60 16 34 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.10 1.74 8.00 -51.93 -0.42 1.32 16 36 H 0.08 1.32 5.59 -51.93 -0.29 1.03 16 37 H 0.15 1.83 7.67 -52.48 -0.40 1.43 16 38 H 0.15 1.20 7.56 -52.49 -0.40 0.80 16 LS Contribution 329.25 15.07 4.96 4.96 Total: -1.00 -34.21 329.25 -7.63 -41.84 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -3.74 Total: 10.89 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.88 Total: -8.66 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.13 Total: -35.17 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -2.35 Total: -47.42 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -4.13 Total: 13.55 kcal Atomic # 16 Polarization: 20.63 SS G_CDS: -0.62 Total: 20.01 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.21 -7.63 -41.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332001337.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.266 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds